View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_21 (Length: 266)
Name: NF15538_low_21
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 4951782 - 4952016
Alignment:
| Q |
14 |
agagtaatttatatctttataatggaaactggaaaatagtctcatctcattctcaatcatgaattttagaggaatcatctttatgttgagatgtgttgca |
113 |
Q |
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| T |
4951782 |
agagtaatttatatctttataatggaaactagaaaatagtctcatctcattctcaatcatgaattttagaggaatcatctttgtgttgagatgtgttgca |
4951881 |
T |
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| Q |
114 |
tggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagacgt |
213 |
Q |
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| T |
4951882 |
tggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagtcgt |
4951981 |
T |
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| Q |
214 |
gtattctcttgaacaactttgtcatgggactcaga |
248 |
Q |
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| T |
4951982 |
gcattctcttgaacaactgtgtcatgtgactcaga |
4952016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 64 - 248
Target Start/End: Complemental strand, 10483843 - 10483656
Alignment:
| Q |
64 |
tctcaatcatgaattttagaggaatcatc---tttatgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
160 |
Q |
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| T |
10483843 |
tctcaatcatgaattttagaggaatcatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
10483744 |
T |
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| Q |
161 |
tttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagacgtgtattctcttgaacaactttgtcatgggactcaga |
248 |
Q |
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| T |
10483743 |
tttgcatgtcagctaccatttggcgaagatcaaaagtttcttccttaagtcttgcattctcttgaacaactttgtcatgtgactcaga |
10483656 |
T |
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