View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_23 (Length: 248)
Name: NF15538_low_23
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 5333449 - 5333292
Alignment:
| Q |
86 |
ctatttcaggaccccgccaaaacagcagaaacctagttatatatatttattgcatttcagttgctaccgccgctgaccattggtgcgcaggtacatcatt |
185 |
Q |
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| T |
5333449 |
ctatttcaggaacccgccaaaacagcagaaacctagttatatatatttattgcatttcagttgctaccgccgctgaccattggtgcaccggtacatcatt |
5333350 |
T |
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| Q |
186 |
tttattatttgttcttttgattcctacaaatcttgattattttttgtcctttgctact |
243 |
Q |
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| T |
5333349 |
tttattatttgttcttttgattcctacaaatcttgattattttttgtcctttgttact |
5333292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 5330360 - 5330202
Alignment:
| Q |
86 |
ctatttcaggaccccgccaaaacagcagaaacctagttatatatatttattgcatttcagttgctaccgccgctgaccattggtgcgcaggtacatcatt |
185 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5330360 |
ctatttcaggaacccgccaaaacagcagaaacctagttatatatatttattgcatttcagttgctaccgccgctgaccattggtgcacaggtacatcatt |
5330261 |
T |
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| Q |
186 |
tttattatttgttcttttgattcctacaaatcttgattatt-ttttgtcctttgctact |
243 |
Q |
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| T |
5330260 |
tttattatttgttcttttgattcctacaaatcttgattatttttttgtcctttgttact |
5330202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 5351077 - 5351011
Alignment:
| Q |
177 |
tacatcatttttattatttgttcttttgattcctacaaatcttgattattttttgtcctttgctact |
243 |
Q |
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| T |
5351077 |
tacatcatttttattatttgttcttttgattcctacaaatcttgattattttttgtcctttgttact |
5351011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 14637619 - 14637550
Alignment:
| Q |
156 |
cgctgaccattggtgcgcaggtacatcatttttattatttgttcttttgattcctacaaatcttgattattt |
227 |
Q |
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| T |
14637619 |
cgctgaccattggtgc--aggtacatcatttttattatttgttcttttgattcctacaaatcttgattattt |
14637550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 14637710 - 14637650
Alignment:
| Q |
86 |
ctatttcaggaccccgccaaaacagcagaaacctagttatatatatttattgcatttcagt |
146 |
Q |
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| T |
14637710 |
ctatttcaggaaaccgccaaaacagcagaaacctagttgtatatatctattgaatttcagt |
14637650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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