View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_27 (Length: 226)
Name: NF15538_low_27
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 27545023 - 27544804
Alignment:
| Q |
7 |
acaacaagagggagcaatccaagtcacctcctagaaacaccaattaccattgttacaagagttcctcaagttcaagagcatagagnnnnnnntcttctca |
106 |
Q |
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| T |
27545023 |
acaacaagaggaagcaatccaagtcacctcctagaaacaccaattaccattgttacaagagttcctcaagttcaagagcatagagaaaaaaatcttctca |
27544924 |
T |
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| Q |
107 |
agaacccccgagaagaaagagacaatagaaggatgctacacaattcctttttatagggaaatcgacgaagattccatatagtggcgctttcgcctttcca |
206 |
Q |
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| T |
27544923 |
agaacccccgagaagaaagagacaatagaaggatgctacacaattcctttttatagggaaatcgacgaagattccatatagtggcgctttcacctttcca |
27544824 |
T |
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| Q |
207 |
ccaaggaggaatacgacgac |
226 |
Q |
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| T |
27544823 |
ccaaggaggaatacgacgac |
27544804 |
T |
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