View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_6 (Length: 461)
Name: NF15538_low_6
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 32 - 445
Target Start/End: Original strand, 6258179 - 6258592
Alignment:
| Q |
32 |
ttaagtttgaagagtctatgtggtagtgggtgaattggagcataaaatgtttatggtgtgtagttctagtagcagcacacaagtgctaatattgaactca |
131 |
Q |
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| T |
6258179 |
ttaagtttgaagagtctatgtggtggtgggtgaagtggagcataaaatgtttatggtgtgtagttctagtagcagcacacaagtgctaatattgaactca |
6258278 |
T |
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| Q |
132 |
gcttcacctttgacttctttgtcacatagaagaatccatgttccaaactcagttactaaggttgttggagttggaagaagaggtggaaaatggaacatga |
231 |
Q |
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| T |
6258279 |
gcttcacctttgacttctttgtcacatagaagaatctatgttccaaattcagttactaaggttgttggagttggaagaagaggtggaaaatggaacatga |
6258378 |
T |
|
| Q |
232 |
cagttaataacagtggtgaaaataattcaattacaacaactaccacacactttgatgataacaaggttgtagattcagcttcaaaagttgtgagaaattt |
331 |
Q |
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| T |
6258379 |
cagttaataacaatggtgaaaataattcaattactacaactaccacacactttgatgataacaaggttgtagattcagcttcaaaagttgtgagaaattt |
6258478 |
T |
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| Q |
332 |
ctatgagggaatcaatgcacatgatgttgattctgtacaatatcttatctctgaaaattgtgtgtatgaggatcttgtctttccacgtccatttgtgggt |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6258479 |
ctatgagggaatcaatgcacatgatgttgattctgtacaatatcttatctctgaaaattgtgtgtatgaggatcttgtctttccacgtccatttgtgggt |
6258578 |
T |
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| Q |
432 |
cgtaaggtattttg |
445 |
Q |
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| T |
6258579 |
cgtaaggtattttg |
6258592 |
T |
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