View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_8 (Length: 440)
Name: NF15538_low_8
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Original strand, 34924873 - 34925281
Alignment:
| Q |
20 |
tacattacatccaagtgttataatagacggtacatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaatt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34924873 |
tacattacatccaagtgttataatagacggtacatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaatt |
34924972 |
T |
|
| Q |
120 |
gtggtcaaaataacaatccagaacccttgctagaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacagattgcacaatacgaatact |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34924973 |
gtggtcaaaataacaatccagaacccttgctagaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacagattgcacaatacgaatact |
34925072 |
T |
|
| Q |
220 |
ttattgatgaatataattctggagaatgattaaaaatcagaagtttaaacatagacaaattgcagaagttatataggaaatagtacagaataacaagaca |
319 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925073 |
ttattgatgaatataattctggagaatgattcaaaaccagaagtttaaacatagacaaattgcagaagttatataggaaatagtacagaataacaagaca |
34925172 |
T |
|
| Q |
320 |
cacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatgataaaactaaacatagtttaattttagttacagc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925173 |
cacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatgataaaactaaacatagtttaattttagttacagc |
34925272 |
T |
|
| Q |
420 |
atttagaat |
428 |
Q |
| |
|
||||||||| |
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|
| T |
34925273 |
atttagaat |
34925281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 428
Target Start/End: Original strand, 34929242 - 34929643
Alignment:
| Q |
22 |
cattacatccaagtgttataatagacggtacatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaattgt |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
34929242 |
cattacatccaagtgttacaatagacggtacatgggggagggacttactagagtagatccctcaccttagaagccagctaacaattcatctataaattgt |
34929341 |
T |
|
| Q |
122 |
ggtcaaaataacaatccagaacccttgctagaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacagattgcacaatacgaatacttt |
221 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34929342 |
ggtcaagataataatccagaacccttgcaagatgtgattagaatactgatagaatcaggcatcgaacagaaacaaacagattgcacaatacgaatactt- |
34929440 |
T |
|
| Q |
222 |
attgatgaatataattctggagaatgattaaaaatcagaagtttaaacatagacaaattgcagaagttatataggaaatagtacagaataacaagacaca |
321 |
Q |
| |
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||||||| ||||||||||||||| ||| |||| ||||| || ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
34929441 |
-ttgatgacaataattctggagaataattcaaaaccagaatactacacatagacaaattgcagtagtcatataggaaatagtacagaataacaagacaca |
34929539 |
T |
|
| Q |
322 |
catagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatgataaaactaaacatagtttaattttagttacagcat |
421 |
Q |
| |
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|||||||||||||| ||||||||| || || ||||||||||||||||| ||| |||||| | |||||||||| |||||||||||||||| |||| || |
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|
| T |
34929540 |
catagaccaagattcgagagcttgattctctccctcccaagtgtctaatgctcgcaactttaggataaaacta---atagtttaattttagtcacagaat |
34929636 |
T |
|
| Q |
422 |
ttagaat |
428 |
Q |
| |
|
| ||||| |
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|
| T |
34929637 |
tgagaat |
34929643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 183 - 428
Target Start/End: Original strand, 34934941 - 34935183
Alignment:
| Q |
183 |
ccgaacagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggagaatgattaaaaatcagaagtttaaacatagacaaattgc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||| || ||||||||||||||| |
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| T |
34934941 |
ccgaacagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggataataattcaaaaccagaatactacacatagacaaattgc |
34935040 |
T |
|
| Q |
283 |
agaagttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttc |
382 |
Q |
| |
|
|| ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||||||||| ||| |||||| |
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|
| T |
34935041 |
agtagtcatataggagatagtacagaataacaagacacacatagaccaagattcgagagcttgattctctccctcccaagtgtctaatgctcgcaacttt |
34935140 |
T |
|
| Q |
383 |
atgataaaactaaacatagtttaattttagttacagcatttagaat |
428 |
Q |
| |
|
| |||||||||| |||||||||||||||| |||||||| ||||| |
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|
| T |
34935141 |
aggataaaacta---atagtttaattttagtcacagcattgagaat |
34935183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 403
Target Start/End: Complemental strand, 32683670 - 32683559
Alignment:
| Q |
286 |
agttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatg |
385 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||| |||||| ||||||||| |||||||| || | |||||||||||||| ||||||||||| | | |
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|
| T |
32683670 |
agttatataggaatcagtacataataaccagacacgcataga-caagatttgcgagcttgg----ca-cttcccaagtgtctaaaactcacaacttaagg |
32683577 |
T |
|
| Q |
386 |
ataaaactaaacatagtt |
403 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
32683576 |
ataaaacagaacatagtt |
32683559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 403
Target Start/End: Complemental strand, 32685380 - 32685269
Alignment:
| Q |
286 |
agttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatg |
385 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||| |||||| ||||||||| |||||||| || | |||||||||||||| ||||||||||| | | |
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|
| T |
32685380 |
agttatataggaatcagtacataataaccagacacgcataga-caagatttgcgagcttgg----ca-cttcccaagtgtctaaaactcacaacttaagg |
32685287 |
T |
|
| Q |
386 |
ataaaactaaacatagtt |
403 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
32685286 |
ataaaacagaacatagtt |
32685269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 28699374 - 28699345
Alignment:
| Q |
289 |
tatataggaaatagtacagaataacaagac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28699374 |
tatataggaaatagtacagaataacaagac |
28699345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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