View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15539_high_2 (Length: 271)

Name: NF15539_high_2
Description: NF15539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15539_high_2
NF15539_high_2
[»] chr5 (13 HSPs)
chr5 (15-271)||(10609308-10609564)
chr5 (30-163)||(10562730-10562866)
chr5 (30-163)||(10719268-10719407)
chr5 (30-163)||(10743072-10743208)
chr5 (27-143)||(10749382-10749501)
chr5 (30-161)||(10765485-10765622)
chr5 (15-97)||(9838683-9838765)
chr5 (52-130)||(10590819-10590897)
chr5 (23-95)||(11050235-11050307)
chr5 (15-91)||(19608220-19608296)
chr5 (52-125)||(10602497-10602570)
chr5 (19-71)||(7190800-7190852)
chr5 (46-94)||(10548578-10548626)
[»] chr6 (6 HSPs)
chr6 (43-163)||(12955503-12955626)
chr6 (38-163)||(12946344-12946472)
chr6 (43-163)||(12955781-12955904)
chr6 (38-163)||(12897268-12897396)
chr6 (42-163)||(12904889-12905013)
chr6 (42-163)||(12929979-12930103)
[»] chr2 (1 HSPs)
chr2 (43-163)||(17925789-17925912)
[»] chr3 (1 HSPs)
chr3 (16-77)||(31469509-31469570)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 10609564 - 10609308
Alignment:
Q  15 atctaagactccatttggatcattggatattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaatgccactgccacagttttgttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10609564 atctaagactccatttggatcattggatattgattctttgaatttaagcaatgacaaataatcagtttggtttcctaatgccactgccacagttttgttt 10609465  T
Q  115 gtaccaaaccacattatatttaaggtaaacagaaaaagaagatgaaggtgtatgtacataagtatccttgacaagcaagaaaatgacttcattttgttta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10609464 gtaccaaaccacattatatttaaggtaaacagaaaaagaagatgaaggtgtatgtacataagtatccttgacaagcaagaaaatgacttcattttgttta 10609365  T
Q  215 ggacaaagaggtttatgataaatagttttgttttggttttgataattatgtgggaaa 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10609364 ggacaaagaggtttatgataaatagttttgttttggttttgataattatgtgggaaa 10609308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 10562866 - 10562730
Alignment:
Q  30 tggatcattggatattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaat---gccactgccacagttttgtttgtaccaaaccac 126  Q
    ||||||| |||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||   |||||||||||  ||||||||||   |||||||    
T  10562866 tggatcactggatattgattctttgaatttgagcaatgctaaatgatctgtttggtttcctaatgcagccactgccaccattttgtttgtggtaaaccac 10562767  T
Q  127 attatatttaaggtaaacagaaaaagaagatgaaggt 163  Q
    |||| |||||||||||| |||||||||||||||||||    
T  10562766 attaaatttaaggtaaaaagaaaaagaagatgaaggt 10562730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 10719268 - 10719407
Alignment:
Q  30 tggatcattggatattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaat---gccactgccacagttttgtttgtaccaaaccac 126  Q
    ||||||| ||| |||| ||||||||||||| |||||||| |||| ||| |||||||| ||||||   |||||||||||| |||||||||| |||||||||    
T  10719268 tggatcactggttattcattctttgaatttgagcaatgctaaatgatctgtttggttacctaatgcagccactgccacaattttgtttgtgccaaaccac 10719367  T
Q  127 attat---atttaaggtaaacagaaaaagaagatgaaggt 163  Q
    |||||   |||||||||||| |||||||||||||||||||    
T  10719368 attattaaatttaaggtaaaaagaaaaagaagatgaaggt 10719407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 10743072 - 10743208
Alignment:
Q  30 tggatcattggatattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaat---gccactgccacagttttgtttgtaccaaaccac 126  Q
    ||||||| | |||||||||||||||||||| ||||||||||||| ||| | |||||||||||||   |||||||||||  |||||||||| ||||||  |    
T  10743072 tggatcacttgatattgattctttgaatttgagcaatgccaaatgatctgattggtttcctaattgagccactgccaccattttgtttgtgccaaactgc 10743171  T
Q  127 attatatttaaggtaaacagaaaaagaagatgaaggt 163  Q
    |||| ||| |||||||| |||||||||||||||||||    
T  10743172 attaaattcaaggtaaaaagaaaaagaagatgaaggt 10743208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 10749382 - 10749501
Alignment:
Q  27 atttggatcattggatattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaat---gccactgccacagttttgtttgtaccaaac 123  Q
    |||||| ||| | |||||||||||||| |||||  |||||||||||| ||| |||||||||||||||   ||||||||||| ||||||||||| ||||||    
T  10749382 atttgggtcactcgatattgattctttaaatttgtgcaatgccaaatgatctgtttggtttcctaatgcagccactgccacggttttgtttgtgccaaac 10749481  T
Q  124 cacattatatttaaggtaaa 143  Q
     |||||| ||||||||||||    
T  10749482 gacattaaatttaaggtaaa 10749501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 10765485 - 10765622
Alignment:
Q  30 tggatcattggatattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaat---gccactgccacagttttgtttgtaccaaaccac 126  Q
    ||||||| | |||||||||||||||||||| ||||||||||| | ||| | |||||||||||||   |||||||||||  |||||||||| |||||||||    
T  10765485 tggatcacttgatattgattctttgaatttgagcaatgccaattgatctgattggtttcctaattgagccactgccaccattttgtttgtgccaaaccac 10765584  T
Q  127 attat---atttaaggtaaacagaaaaagaagatgaag 161  Q
    ||||    | |||||||||| |||||||||||||||||    
T  10765585 attaataaaattaaggtaaaaagaaaaagaagatgaag 10765622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 9838683 - 9838765
Alignment:
Q  15 atctaagactccatttggatcattggatattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaatgcca 97  Q
    |||||||||||||||||| ||| |||||||||||||||||||||  |||||||| | || |||||||||||||||||||||||    
T  9838683 atctaagactccatttgggtcactggatattgattctttgaattggagcaatgcaagatgatcagtttggtttcctaatgcca 9838765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 10590819 - 10590897
Alignment:
Q  52 ttgaatttaagcaatgccaaataatcagtttggtttcctaatgccactgccacagttttgtttgtaccaaaccacatta 130  Q
    |||||||  ||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||  |||||||||||||    
T  10590819 ttgaattggagcaatgccaaatgatcggtttggtttcctagtgccactgccacagttctgtttgggccaaaccacatta 10590897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 11050235 - 11050307
Alignment:
Q  23 ctccatttggatcattggatattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaatgc 95  Q
    |||||||||| |||  | |||||| |||||||||||||| |||||| |||| ||| |||||||||||||||||    
T  11050235 ctccatttgggtcacggtatattgtttctttgaatttaatcaatgcaaaatgatctgtttggtttcctaatgc 11050307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 19608220 - 19608296
Alignment:
Q  15 atctaagactccatttggatcattggatattgattctttgaatttaagcaatgccaaataatcagtttggtttccta 91  Q
    |||||||||||||||||| ||| | |||||||| ||||||||||  |||||||  ||||||||||| || |||||||    
T  19608220 atctaagactccatttgggtcaattgatattgaatctttgaattggagcaatgttaaataatcagtctgatttccta 19608296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 10602570 - 10602497
Alignment:
Q  52 ttgaatttaagcaatgccaaataatcagtttggtttcctaatgccactgccacagttttgtttgtaccaaacca 125  Q
    |||||||  ||||| ||||||| ||||||||||||||||| ||||| || || |||| |||||| |||||||||    
T  10602570 ttgaattggagcaaagccaaatgatcagtttggtttcctagtgccattgtcagagttctgtttggaccaaacca 10602497  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 7190852 - 7190800
Alignment:
Q  19 aagactccatttggatcattggatattgattctttgaatttaagcaatgccaa 71  Q
    |||| ||||| ||||||||| ||||||||||||||||| || ||||| |||||    
T  7190852 aagattccatatggatcattagatattgattctttgaacttgagcaacgccaa 7190800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 10548626 - 10548578
Alignment:
Q  46 gattctttgaatttaagcaatgccaaataatcagtttggtttcctaatg 94  Q
    ||||| ||||||||||||||||  | || ||||||||||||||||||||    
T  10548626 gattccttgaatttaagcaatgatagatgatcagtttggtttcctaatg 10548578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 12955626 - 12955503
Alignment:
Q  43 attgattctttgaatttaagcaatgccaaataatcagtttggtttcctaatgc---cactgccacagttttgtttgtaccaaaccacattatatttaagg 139  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||   |||||||  | ||||||||| |||||||||||||| ||||||||    
T  12955626 attgattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagtcactgccgtaattttgtttggaccaaaccacattaaatttaagg 12955527  T
Q  140 taaacagaaaaagaagatgaaggt 163  Q
    ||| || |||||| ||||||||||    
T  12955526 taagcaaaaaaaggagatgaaggt 12955503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 12946472 - 12946344
Alignment:
Q  38 tggatattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaat---gccactgccacagttttgtttgtaccaaaccacattatatt 134  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |   |||||||||    ||||||||| |||||||||||||| |||    
T  12946472 tggaaattgattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgcccttattttgtttggaccaaaccacattaaatt 12946373  T
Q  135 taaggtaaacagaaaaagaagatgaaggt 163  Q
    |||||||| || |||||| ||||||||||    
T  12946372 taaggtaagcataaaaaggagatgaaggt 12946344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 12955904 - 12955781
Alignment:
Q  43 attgattctttgaatttaagcaatgccaaataatcagtttggtttcctaatgc---cactgccacagttttgtttgtaccaaaccacattatatttaagg 139  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||   || ||||  | ||||||||| |||||||||||||| ||||||||    
T  12955904 attgattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagtcattgccttaattttgtttggaccaaaccacattaaatttaagg 12955805  T
Q  140 taaacagaaaaagaagatgaaggt 163  Q
    ||| || |||||| ||||||||||    
T  12955804 taagcaaaaaaaggagatgaaggt 12955781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 12897396 - 12897268
Alignment:
Q  38 tggatattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaat---gccactgccacagttttgtttgtaccaaaccacattatatt 134  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |   |||| ||||  | ||||||||| |||||||||||||| |||    
T  12897396 tggaaattgattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccaatgccctaattttgtttggaccaaaccacattaaatt 12897297  T
Q  135 taaggtaaacagaaaaagaagatgaaggt 163  Q
    |||||||| || ||||||  |||||||||    
T  12897296 taaggtaagcataaaaaggggatgaaggt 12897268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 12905013 - 12904889
Alignment:
Q  42 tattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaat---gccactgccacagttttgtttgtaccaaaccacattatatttaag 138  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| |   |||||||||  | ||||| ||| || ||||||||||| ||| |||    
T  12905013 tattgattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgccgtaattttgattggacaaaaccacattaaattgaag 12904914  T
Q  139 gtaaacagaaaaagaagatgaaggt 163  Q
    |||| ||||||||| ||||||||||    
T  12904913 gtaagcagaaaaaggagatgaaggt 12904889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 12930103 - 12929979
Alignment:
Q  42 tattgattctttgaatttaagcaatgccaaataatcagtttggtttcctaatgc---cactgccacagttttgtttgtaccaaaccacattatatttaag 138  Q
    |||||||||||||||||| |||||||||| || ||||||||| ||||||| |||   |||||||  | ||||||||| || ||||||||||| |||||||    
T  12930103 tattgattctttgaatttgagcaatgccagatgatcagtttgctttcctattgcagccactgccctaattttgtttggacaaaaccacattaaatttaag 12930004  T
Q  139 gtaaacagaaaaagaagatgaaggt 163  Q
    |||| || |||||| ||||||||||    
T  12930003 gtaatcataaaaaggagatgaaggt 12929979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 17925789 - 17925912
Alignment:
Q  43 attgattctttgaatttaagcaatgccaaataatcagtttggtttcctaat---gccactgccacagttttgtttgtaccaaaccacattatatttaagg 139  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||| |   |||||||||  | ||||||||| |||||||||||||| ||| ||||    
T  17925789 attgattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgccctaattttgtttggaccaaaccacattaaattgaagg 17925888  T
Q  140 taaacagaaaaagaagatgaaggt 163  Q
    ||| || |||||| ||||||||||    
T  17925889 taagcaaaaaaaggagatgaaggt 17925912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 31469509 - 31469570
Alignment:
Q  16 tctaagactccatttggatcattggatattgattctttgaatttaagcaatgccaaataatc 77  Q
    ||||||| || |||||  || |||||||||||||| |||||||| |||||||||||| ||||    
T  31469509 tctaagattctatttgagtctttggatattgattccttgaatttgagcaatgccaaaaaatc 31469570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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