View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15539_high_3 (Length: 249)
Name: NF15539_high_3
Description: NF15539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15539_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10609298 - 10609059
Alignment:
| Q |
1 |
agcatgcatttaaatactgatggtaagagttggtgttgaatttttattaacttcacacatacaaaaagatattatattccaaagtcaagtgaattgcttg |
100 |
Q |
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| T |
10609298 |
agcatgcatttaaatactgatggtaagagttagtgttgaatttttattaacttcacacatacaaaaagatattatattccaaagtcaagtgaattgcttg |
10609199 |
T |
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| Q |
101 |
aacatacacagaagcagccaagcagggcacatgggagccaaagtgaagtgacagtgctatatatgtgattatgtggacattttaactccacgcttgctgc |
200 |
Q |
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| T |
10609198 |
aacatacacagaagcagccaagcagggcacatgggagccaaagtgaagtgacagtgctatatatgtgattatgtggacattttaactccacgcttgctgc |
10609099 |
T |
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| Q |
201 |
atttatgagttataggttaagatatctttcatgagaatta |
240 |
Q |
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| T |
10609098 |
atttatgagttataggttaagatatctttcatgagaatta |
10609059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 10562580 - 10562526
Alignment:
| Q |
39 |
aatttttattaacttcacacatacaaa---aagatattatattccaaagtcaagt |
90 |
Q |
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| T |
10562580 |
aatttttattaactccacacatacaaaaataagatattatgttcaaaagtcaagt |
10562526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 44158358 - 44158453
Alignment:
| Q |
70 |
tattatattccaaagtcaagtgaattgcttgaacatacacagaagcagccaagcagggcacatgggagccaaagtgaagtgacagtgctatatatg |
165 |
Q |
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| T |
44158358 |
tattatattccaaagtcaagtgaattgctccaacatacacagaagcagccaagcaaggcacatgggagccaaagtgaagtgacagtgctatatatg |
44158453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 31779441 - 31779360
Alignment:
| Q |
70 |
tattatattccaaagtcaagtgaattgc-ttgaa-catacacagaagcagccaagcagggcacatgggagccaaagtgaagt |
149 |
Q |
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| T |
31779441 |
tattatattccaaagtcaagtgaattgaattgaaacatacacagaagcagccaagcaaggcacatgggagccaaagtgaagt |
31779360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 36153583 - 36153625
Alignment:
| Q |
109 |
cagaagcagccaagcagggcacatgggagccaaagtgaagtga |
151 |
Q |
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| T |
36153583 |
cagaagcagccaagcaaggcacatgggagccaaagggaagtga |
36153625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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