View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15539_low_1 (Length: 613)
Name: NF15539_low_1
Description: NF15539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15539_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 11584781 - 11584342
Alignment:
| Q |
1 |
gattgtttaccgtatcctggagtcttgttttggcaattgagggagccgtgttggtgcgtcacttatcaactaaagtcgctttgtataaggggatacacag |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11584781 |
gattgtttaccgtaccctggagtcttgttttggcaattgagggagccatgttggtgcgtcacttatcaactaaagtcgctttgtataaggggatacacag |
11584682 |
T |
|
| Q |
101 |
gttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcggatgattgttcatgggttga |
200 |
Q |
| |
|
|| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | |
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| T |
11584681 |
gtggtgagtttgaagttgaatttgttaagtacttaatattaaatggcggagttttggagaagatttctatttggtttttggaagattgttcatgggttaa |
11584582 |
T |
|
| Q |
201 |
tgttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacctggggtagagtatatgagaaaatatggtggt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11584581 |
tgttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacctggggtagagtatatgagaaaatatggtggt |
11584482 |
T |
|
| Q |
301 |
agctttgaaaagtgggtcataaccctaaaataaaatgcttgttggttaaacaatgttttttgttgtgataaatcttggggttagaaccatcaaaatttca |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11584481 |
agctttgaaaagtgggtcacaaccctaaaataaaatgcttgttggttaaacaatgttttttgttgtgataaatcttggggttagaaccatcaaaatttca |
11584382 |
T |
|
| Q |
401 |
attagactattgtttattacactacaaactggtagtggtg |
440 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||| |
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| T |
11584381 |
attagactcttgtttattacactacaaactggtagtggtg |
11584342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 500 - 594
Target Start/End: Complemental strand, 11584281 - 11584200
Alignment:
| Q |
500 |
gcatactttattataagcttctatgcattgcagacaataaatccatgtgcgttttgccctttgttattttaaaaagtgatatctatactcactag |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
11584281 |
gcatactttattataagcttctatgcattgcagacaataaatccat-------------tttgttattttaaaaagtgatatctatactcactag |
11584200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 3 - 272
Target Start/End: Original strand, 30373684 - 30373953
Alignment:
| Q |
3 |
ttgtttaccgtatcctggagtcttgttttggcaattgagggagccgtgttggtgcgtcacttatcaactaaagtcgctttgtataaggggatacacaggt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| ||| |||| |||| ||| ||||||||||| ||||||||||||||||| |||||| |
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| T |
30373684 |
ttgtttaccgtatcctggagtcttgttttgggaaaaaagggagccatgtcggtgtgtcatttaccaactaaagtctctttgtataaggggatatacaggt |
30373783 |
T |
|
| Q |
103 |
tgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcggatgattgttcatgggttgatg |
202 |
Q |
| |
|
| ||||||||| ||||||||| || |||||||||||||| || |||||| | ||||| ||| | ||||||||| ||||||||| |||||| | | |
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|
| T |
30373784 |
ggagagtttgaatatgaatttgttaagtacttaatattaaacggtggagttatagagaatattacactttggtttttggatgattgctcatggaacaaag |
30373883 |
T |
|
| Q |
203 |
ttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacctgg |
272 |
Q |
| |
|
|||| ||||| ||||| ||||||| || |||||||| ||| || |||||| |||||||| |||||||| |
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|
| T |
30373884 |
ttgtagcaactaattgtctgctttcgtacccaaagctttcttctaaattgtcctttgatcttaaacctgg |
30373953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 70 - 334
Target Start/End: Complemental strand, 29785867 - 29785603
Alignment:
| Q |
70 |
ctaaagtcgctttgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttcta |
169 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||| | ||||||||| |||| || || || |||||| ||||||||||||||||| |||| || ||| | | |
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|
| T |
29785867 |
ctaaagtctgtttgtataaagggatacaaaggtggagagtttgaatttgagttcgttaagtacttagtattaaatggcggagttatggataatattacca |
29785768 |
T |
|
| Q |
170 |
tttggttttcggatgattgttcatgggttgatgttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacc |
269 |
Q |
| |
|
||||||||| |||||| || || |||| ||| ||||| ||||| || |||| || |||||||| ||||||||| ||||||| ||||| | ||||| |
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|
| T |
29785767 |
tttggtttttggatgaatgctcgtgggatgaagttgtagcaactgcatgtttgcggtcatatccaaaactctctcctaaattgtcaattgatttgaaacc |
29785668 |
T |
|
| Q |
270 |
tggggtagagtatatgagaaaatatggtggtagctttgaaaagtgggtcataaccctaaaataaa |
334 |
Q |
| |
|
|||| |||||||| ||| ||||| ||||||||||| | ||||| | ||||||||| |||| |
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|
| T |
29785667 |
tgggaccgagtatatacaaaagtatggaggtagctttgatgaatgggtgagaaccctaaactaaa |
29785603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 82 - 334
Target Start/End: Original strand, 29965088 - 29965340
Alignment:
| Q |
82 |
tgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcgg |
181 |
Q |
| |
|
||||||| |||||||| |||| | ||||||||| |||| || || || |||||||||||||||||||||||| |||| || ||| | |||||||||| || |
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|
| T |
29965088 |
tgtataaagggatacaaaggtggagagtttgaatttgagttcgtgaagtacttaatattaaatggcggagttatggataatattaccatttggtttttgg |
29965187 |
T |
|
| Q |
182 |
atgattgttcatgggttgatgttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacctggggtagagta |
281 |
Q |
| |
|
|||| |||||||||| ||| ||||| ||||| || |||| || |||||||| ||||||||| ||||||| || || | ||||||||| | ||| | |
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|
| T |
29965188 |
atgactgttcatgggatgaagttgtagcaactggatgtttgcggtcatatccaaaactctctcctaaattgtcaattaatttgaaacctgggatcgagaa |
29965287 |
T |
|
| Q |
282 |
tatgagaaaatatggtggtagctttgaaaagtgggtcataaccctaaaataaa |
334 |
Q |
| |
|
||| || |||||||| || ||||| | ||||| | |||||||||||||| |
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|
| T |
29965288 |
tatacagaagtatggtggcagatttgatgaatgggttagaaccctaaaataaa |
29965340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 80 - 334
Target Start/End: Original strand, 29839136 - 29839390
Alignment:
| Q |
80 |
tttgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttc |
179 |
Q |
| |
|
||||||| | ||||| || |||| | ||||||||| |||||||||| || ||||||||||||||||| |||||| || | || ||| | |||||||||| |
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|
| T |
29839136 |
tttgtatgaagggatgcaaaggtggagagtttgaacttgaatttgttaagtacttaatattaaatggaggagttatgaataatattacaatttggttttt |
29839235 |
T |
|
| Q |
180 |
ggatgattgttcatgggttgatgttgttgcaacaaattgcttgctttcctatccaaagctctctcctgga-ttgtcatttgatctcaaacctggggtaga |
278 |
Q |
| |
|
||||| || ||||||| ||| || || ||||| || || | || ||||| |||||||| |||| | || || ||||| | |||||| | |||| |
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|
| T |
29839236 |
agatgactgctcatgggatgaagtagtagcaactgcatgtttacggtcatatccgaagctctc-cctgaaattatctattgatatgaaacctagtataga |
29839334 |
T |
|
| Q |
279 |
gtatatgagaaaatatggtggtagctttgaaaagtgggtcataaccctaaaataaa |
334 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
29839335 |
gtatataagaaaatatggtggtagctttgatgagtgggtccgaaccctaaaataaa |
29839390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 308
Target Start/End: Complemental strand, 29857222 - 29857007
Alignment:
| Q |
93 |
atacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcggatgattgttca |
192 |
Q |
| |
|
||||| |||| | ||||||||| ||||||||| || ||||||||||||||||| |||||| || | || ||| | |||||||||| |||||| || ||| |
|
|
| T |
29857222 |
atacaaaggtggagagtttgaaattgaatttgctaagtacttaatattaaatggaggagttatgaataatattacaatttggtttttggatgactgctca |
29857123 |
T |
|
| Q |
193 |
tgggttgatgttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacctggggtagagtatatgagaaaat |
292 |
Q |
| |
|
|||| ||| || || ||||| || || | || |||| ||||||||| || ||| || ||||| | |||||| || |||||||||| ||||||| |
|
|
| T |
29857122 |
tgggatgaagtcgtagcaactgcatgtttacagtcatatctaaagctctccccgaaattatccattgatttgaaacctaggatagagtatataagaaaat |
29857023 |
T |
|
| Q |
293 |
atggtggtagctttga |
308 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29857022 |
atggtggtagctttga |
29857007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 29857404 - 29857473
Alignment:
| Q |
265 |
aaacctggggtagagtatatgagaaaatatggtggtagctttgaaaagtgggtcataaccctaaaataaa |
334 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
29857404 |
aaacctgggatagaatatataagaaaatatggtggtagctttgatgagtgggtccgaacactaaaataaa |
29857473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 29857215 - 29857278
Alignment:
| Q |
79 |
ctttgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaa |
142 |
Q |
| |
|
|||||||||| |||||||| |||| | ||||||||| ||||||||| || ||||||||||||| |
|
|
| T |
29857215 |
ctttgtataaagggatacaaaggtggagagtttgaaattgaatttggtaagtacttaatattaa |
29857278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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