View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15539_low_5 (Length: 208)
Name: NF15539_low_5
Description: NF15539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15539_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 6803857 - 6804017
Alignment:
| Q |
32 |
tcattcataactttagaaacatctaaaacaaataaaccattactataaaaacctttgcctacaaaacccccacattttgaaagtagaactttgtctaaat |
131 |
Q |
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| T |
6803857 |
tcattcataactttagaaacatctaaaataaataaaccattactatagaaacctttgcctacaaagcccccacattttgaaagtagaactttgcctgaat |
6803956 |
T |
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| Q |
132 |
caaaattagtttttatgcccgctttgctcaatatagatacagacactaaattataattcat |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6803957 |
caaaattagtttttatgcccgctttgctcaatatagatacagacactaaattataattcat |
6804017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 34 - 192
Target Start/End: Complemental strand, 14060080 - 14059922
Alignment:
| Q |
34 |
attcataactttagaaacatctaaaacaaataaaccattactataaaaacctttgcctacaaaacccccacattttgaaagtagaactttgtctaaatca |
133 |
Q |
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|||||||| | |||| | ||| || ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| | | ||| |
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| T |
14060080 |
attcataaatgtagagatatccaacacaaatacaccattactataaaatcctttgcctacaaagcccccacattttgaaagtaaaactttgtttgattca |
14059981 |
T |
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| Q |
134 |
aaattagtttttatgcccgctttgctcaatatagatacagacactaaattataattcat |
192 |
Q |
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||| | | ||| |||||||||||||||||||| |||||||| ||||||||| |||| |
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| T |
14059980 |
aaagtgactgttacacccgctttgctcaatatagacacagacaccaaattataactcat |
14059922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 26972544 - 26972702
Alignment:
| Q |
34 |
attcataactttagaaacatctaaaacaaataaaccattactataaaaacctttgcctacaaaacccccacattttgaaagtagaactttgtctaaatca |
133 |
Q |
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|||||||| | |||| | ||| || ||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| | | ||| |
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| T |
26972544 |
attcataaatgtagagatatccaacacaaataaatcgttactataaaatcctttgcctacaaagcccccacattttgaaagtaaaactttgtttgattca |
26972643 |
T |
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| Q |
134 |
aaattagtttttatgcccgctttgctcaatatagatacagacactaaattataattcat |
192 |
Q |
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||| | | ||| |||||||||||||||||||| ||| |||| ||||||||| |||| |
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| T |
26972644 |
aaagtgactgttacacccgctttgctcaatatagacacatacaccaaattataactcat |
26972702 |
T |
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