View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553R-Insertion-4 (Length: 765)
Name: NF1553R-Insertion-4
Description: NF1553R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553R-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 647; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 9 - 765
Target Start/End: Complemental strand, 32596936 - 32596179
Alignment:
| Q |
9 |
cgatttttcttcaggttttctcttgcagacatcatgggttacttcaatttcgatgccgagttcaaattgttacgctttcaataattcaagtcgaattgtt |
108 |
Q |
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| T |
32596936 |
cgatttttcttcaggttttctcttgcagacatcatgggttacttcaatttcgatgccgagttcaaattgttacgctttcaataattcaagtcgaattgtt |
32596837 |
T |
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| Q |
109 |
gatttcgtatccttcatttccacatgcttcaagttttcaacttttattaggcattgcattttaacgttactaattgcaaatgggtcattattggattcta |
208 |
Q |
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| T |
32596836 |
gatttcgtatccttcatttccacatgcttcaagttttcaacttttattaggcattgcattttaacgttactaattgcaaatgggtcattattggattcta |
32596737 |
T |
|
| Q |
209 |
attttagtatattatggatgtttttt-aatggtaactagtagtgttgttaaacgacgctcgaaatttgatcaaattgctattgctccgtggtacattatt |
307 |
Q |
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| T |
32596736 |
attttagtatattatggatgtttttttaatggtaactagtagtgttgttaaacgaagcgcgaaatttgatcaaattgctattgctccgtggtacattatt |
32596637 |
T |
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| Q |
308 |
tagtacaaatattgtgaaatcatgactatattggcgctatagcactgttgcatagcagaaacaaattaccattttccgcgatttgcaattggcaacactg |
407 |
Q |
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| T |
32596636 |
tagtacaaatattgtgaaatcatgactatattggcgctatagcactgttgcatagcagaaacaaattaccattttccgcgatttgcaattggcaacactg |
32596537 |
T |
|
| Q |
408 |
gtaactagttgatgatatcattgatatggttagtatattgcttttgttagttattcttttttatttcccttctcgagcttgtttttacctgaccaattaa |
507 |
Q |
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| T |
32596536 |
gtaactagttgatgatatcattgatatggttagtatattgcttttgttagttattcttttttatttcttttctcgagcttgtttttacttgaccaattaa |
32596437 |
T |
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| Q |
508 |
atagagtggctggagtggttacccttttgagtatgatgagaaggtaatgccctcattcacattattcattatcgttatgnnnnnnnnnnnnnnnnnnnnn |
607 |
Q |
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| T |
32596436 |
atagagtggctggagtggttacccttttgagtatgatgagaaggtaatgccctcattcacattattcattatcgttatgttttttaacttatttatttat |
32596337 |
T |
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| Q |
608 |
nnnngatcaagttgggaatcccgggtttgagccccgctcctgcatatggcattgcaatgtccctaccaactgagctatgctcactagggctaatttattt |
707 |
Q |
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| T |
32596336 |
ttttgatcaagtcgggaatcccgggtttgagccccgctcctgcatatggcattgcaatgtccctaccaactgagctatgctcactagcgctaatttattt |
32596237 |
T |
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| Q |
708 |
atatcttcgtttgtagttgtaatatatgaatgattttgtttatgtgttcaattttggt |
765 |
Q |
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| T |
32596236 |
atatcttcgtttgtagttgtaatatatgaatgattttgtttatgtgttcaattttggt |
32596179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 1310130 - 1310188
Alignment:
| Q |
270 |
aatttgatcaaattgctattgctccgtggtacattatttagtacaa-atattgtgaaat |
327 |
Q |
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| T |
1310130 |
aatttgaacaaattgctattgttccttgatacactatttagtacaatatattgtgaaat |
1310188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 41846809 - 41846746
Alignment:
| Q |
305 |
atttagtacaaa-tattgtgaaatcatgactatattggcgctatagcactgttgcatagcagaa |
367 |
Q |
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| T |
41846809 |
atttagtacaaaatattgtgaaatggtgactatagcggcgctatagcactgctgcatagcagaa |
41846746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 661 - 695
Target Start/End: Original strand, 16017086 - 16017120
Alignment:
| Q |
661 |
gcaatgtccctaccaactgagctatgctcactagg |
695 |
Q |
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| T |
16017086 |
gcaatgtccctaccaactgagctatgctcactagg |
16017120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 1912570 - 1912473
Alignment:
| Q |
267 |
cgaaatttgatcaaattgctattgctccgtggtacattatttagtacaaat-attgtgaaatcatgactatattggcgctatagcactgttgcatagc |
363 |
Q |
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| T |
1912570 |
cgaaatttgaacaaatcgctattgttctgcgatatactatttagtacaaattattgtcaaatagcgactatagtgacgctatagcaccgttgcatagc |
1912473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 691
Target Start/End: Complemental strand, 11133120 - 11133075
Alignment:
| Q |
646 |
cctgcatatggcattgcaatgtccctaccaactgagctatgctcac |
691 |
Q |
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| T |
11133120 |
cctgcatataacaatgcattgtccctaccaactgagctatgctcac |
11133075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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