View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1553R-Insertion-5 (Length: 680)

Name: NF1553R-Insertion-5
Description: NF1553R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1553R-Insertion-5
NF1553R-Insertion-5
[»] chr8 (39 HSPs)
chr8 (18-680)||(44633173-44633830)
chr8 (18-250)||(39568333-39568564)
chr8 (17-272)||(45378355-45378605)
chr8 (89-258)||(39269492-39269662)
chr8 (16-146)||(39567063-39567193)
chr8 (16-146)||(39270722-39270852)
chr8 (19-146)||(44632709-44632836)
chr8 (296-363)||(39270419-39270486)
chr8 (296-363)||(39567461-39567528)
chr8 (296-363)||(45377513-45377580)
chr8 (16-85)||(9311021-9311090)
chr8 (16-71)||(14816570-14816625)
chr8 (16-71)||(14829115-14829170)
chr8 (19-85)||(9312165-9312231)
chr8 (21-104)||(22191876-22191958)
chr8 (16-67)||(45377427-45377478)
chr8 (16-82)||(10134608-10134674)
chr8 (16-94)||(22013932-22014010)
chr8 (16-94)||(43633123-43633201)
chr8 (16-69)||(13463153-13463206)
chr8 (316-353)||(45378302-45378339)
chr8 (50-102)||(21015213-21015265)
chr8 (16-94)||(2221594-2221672)
chr8 (16-102)||(9115601-9115687)
chr8 (16-94)||(9739765-9739843)
chr8 (16-94)||(11713200-11713278)
chr8 (16-94)||(22013462-22013540)
chr8 (16-94)||(27786465-27786543)
chr8 (16-94)||(31445669-31445747)
chr8 (16-94)||(41154617-41154695)
chr8 (16-94)||(41154994-41155072)
chr8 (16-94)||(42193779-42193857)
chr8 (16-94)||(45123220-45123298)
chr8 (16-53)||(14819391-14819428)
chr8 (16-101)||(22594318-22594403)
chr8 (316-353)||(39568269-39568306)
chr8 (17-94)||(40229091-40229168)
chr8 (34-102)||(2633803-2633871)
chr8 (321-353)||(39269687-39269719)
[»] chr6 (30 HSPs)
chr6 (16-680)||(5659600-5660249)
chr6 (292-680)||(21612144-21612531)
chr6 (16-258)||(21282817-21283058)
chr6 (18-146)||(5659106-5659235)
chr6 (16-146)||(21611915-21612045)
chr6 (22-124)||(21612831-21612933)
chr6 (292-384)||(21612570-21612663)
chr6 (296-363)||(21283557-21283624)
chr6 (16-85)||(29744781-29744850)
chr6 (16-85)||(29751129-29751198)
chr6 (16-102)||(20489413-20489498)
chr6 (16-73)||(14403688-14403745)
chr6 (16-84)||(12260446-12260514)
chr6 (223-258)||(21612691-21612726)
chr6 (18-75)||(17971846-17971903)
chr6 (17-102)||(20488261-20488346)
chr6 (155-192)||(21612771-21612808)
chr6 (16-77)||(29465755-29465816)
chr6 (16-77)||(29467282-29467343)
chr6 (19-94)||(18683553-18683628)
chr6 (16-55)||(21283922-21283961)
chr6 (16-82)||(959309-959375)
chr6 (16-94)||(3618781-3618859)
chr6 (16-94)||(17383735-17383813)
chr6 (16-94)||(21271486-21271564)
chr6 (16-94)||(21272099-21272177)
chr6 (16-94)||(22498747-22498825)
chr6 (16-102)||(28866392-28866478)
chr6 (16-94)||(31739895-31739973)
chr6 (16-84)||(20745585-20745653)
[»] chr4 (46 HSPs)
chr4 (16-258)||(702467-702708)
chr4 (16-258)||(770766-771007)
chr4 (16-256)||(756487-756726)
chr4 (16-250)||(35060278-35060511)
chr4 (18-250)||(16039503-16039734)
chr4 (16-146)||(35055333-35055463)
chr4 (16-128)||(701633-701745)
chr4 (16-128)||(769932-770044)
chr4 (16-146)||(757427-757557)
chr4 (16-107)||(16038275-16038366)
chr4 (296-363)||(702033-702100)
chr4 (296-363)||(757085-757152)
chr4 (296-363)||(770332-770399)
chr4 (16-86)||(36220588-36220658)
chr4 (296-363)||(35055737-35055804)
chr4 (16-85)||(11038577-11038646)
chr4 (296-363)||(16038664-16038731)
chr4 (16-82)||(51645963-51646029)
chr4 (17-104)||(4890827-4890915)
chr4 (17-82)||(36219408-36219473)
chr4 (16-84)||(40681491-40681559)
chr4 (16-94)||(31487978-31488056)
chr4 (17-94)||(1098376-1098453)
chr4 (316-353)||(16039437-16039474)
chr4 (316-353)||(35060215-35060252)
chr4 (16-104)||(4892081-4892169)
chr4 (37-85)||(51399237-51399285)
chr4 (223-258)||(33075036-33075071)
chr4 (16-83)||(41845501-41845568)
chr4 (16-94)||(1098053-1098131)
chr4 (16-102)||(14525909-14525995)
chr4 (16-94)||(17475397-17475475)
chr4 (16-94)||(17475863-17475941)
chr4 (16-94)||(20614596-20614674)
chr4 (16-102)||(22679633-22679719)
chr4 (16-94)||(25618436-25618514)
chr4 (16-94)||(41610127-41610205)
chr4 (16-94)||(42369489-42369567)
chr4 (16-102)||(53594984-53595070)
chr4 (16-94)||(56271196-56271274)
chr4 (20-85)||(50551403-50551468)
chr4 (321-353)||(702411-702443)
chr4 (321-353)||(756759-756791)
chr4 (321-353)||(770710-770742)
chr4 (19-83)||(9086290-9086354)
chr4 (16-64)||(11039740-11039788)
[»] scaffold0031 (6 HSPs)
scaffold0031 (16-258)||(123424-123665)
scaffold0031 (16-258)||(134300-134541)
scaffold0031 (16-146)||(129347-129477)
scaffold0031 (296-363)||(128992-129059)
scaffold0031 (321-353)||(123694-123726)
scaffold0031 (321-353)||(134565-134597)
[»] chr1 (49 HSPs)
chr1 (16-258)||(51599250-51599491)
chr1 (16-210)||(16962010-16962203)
chr1 (16-146)||(16963354-16963484)
chr1 (16-146)||(51597961-51598091)
chr1 (296-363)||(51598362-51598429)
chr1 (296-363)||(16962999-16963066)
chr1 (16-85)||(46015846-46015915)
chr1 (17-81)||(50682580-50682644)
chr1 (19-82)||(33333404-33333467)
chr1 (16-77)||(6241253-6241314)
chr1 (16-101)||(24326582-24326667)
chr1 (16-101)||(24332287-24332372)
chr1 (16-85)||(46014701-46014770)
chr1 (16-84)||(15073917-15073985)
chr1 (16-91)||(47113097-47113172)
chr1 (16-94)||(6714683-6714761)
chr1 (16-82)||(33332177-33332243)
chr1 (16-77)||(6242694-6242755)
chr1 (37-101)||(29021603-29021667)
chr1 (16-84)||(36143125-36143193)
chr1 (29-101)||(52750175-52750247)
chr1 (16-83)||(7964113-7964180)
chr1 (18-101)||(31697117-31697200)
chr1 (16-94)||(3798324-3798402)
chr1 (16-94)||(3798690-3798768)
chr1 (16-102)||(5804693-5804779)
chr1 (16-102)||(6328302-6328388)
chr1 (16-82)||(10719356-10719422)
chr1 (16-82)||(10719625-10719691)
chr1 (16-94)||(14244166-14244244)
chr1 (16-94)||(14244540-14244618)
chr1 (16-94)||(24370115-24370193)
chr1 (16-102)||(35368856-35368941)
chr1 (16-94)||(37483054-37483132)
chr1 (16-94)||(37708192-37708270)
chr1 (16-94)||(38979671-38979749)
chr1 (16-94)||(38980034-38980112)
chr1 (16-94)||(44114498-44114576)
chr1 (16-94)||(46448721-46448799)
chr1 (16-94)||(50138495-50138573)
chr1 (16-94)||(50227894-50227972)
chr1 (17-82)||(32193987-32194052)
chr1 (17-94)||(46448218-46448295)
chr1 (18-82)||(13834713-13834777)
chr1 (29-101)||(29022522-29022594)
chr1 (16-84)||(32193517-32193585)
chr1 (27-95)||(35369322-35369390)
chr1 (16-84)||(45678712-45678780)
chr1 (321-353)||(51599192-51599224)
[»] chr3 (40 HSPs)
chr3 (17-247)||(21815909-21816139)
chr3 (17-146)||(21817328-21817457)
chr3 (16-104)||(14859103-14859191)
chr3 (16-85)||(27688486-27688555)
chr3 (16-84)||(39992484-39992552)
chr3 (16-73)||(20184448-20184505)
chr3 (16-73)||(27695576-27695633)
chr3 (18-83)||(39991507-39991572)
chr3 (16-84)||(32304232-32304300)
chr3 (16-87)||(20185800-20185871)
chr3 (16-95)||(40503711-40503790)
chr3 (16-82)||(43464812-43464878)
chr3 (16-94)||(45940660-45940738)
chr3 (16-101)||(36982651-36982735)
chr3 (16-101)||(37008090-37008174)
chr3 (302-346)||(36982928-36982972)
chr3 (302-346)||(37008367-37008411)
chr3 (19-83)||(49221510-49221574)
chr3 (20-95)||(27990252-27990326)
chr3 (51-102)||(28919124-28919175)
chr3 (223-258)||(36982856-36982891)
chr3 (223-258)||(37008295-37008330)
chr3 (16-94)||(12739964-12740042)
chr3 (16-82)||(13301948-13302014)
chr3 (16-82)||(13312604-13312670)
chr3 (16-94)||(13355175-13355253)
chr3 (292-330)||(21816177-21816215)
chr3 (16-94)||(24242977-24243055)
chr3 (16-82)||(24244765-24244831)
chr3 (24-102)||(50530625-50530703)
chr3 (16-86)||(52857273-52857343)
chr3 (37-95)||(54831876-54831934)
chr3 (16-93)||(12740335-12740412)
chr3 (16-69)||(17509464-17509517)
chr3 (172-213)||(36982826-36982867)
chr3 (172-213)||(37008265-37008306)
chr3 (17-94)||(39198418-39198495)
chr3 (16-69)||(42540163-42540216)
chr3 (50-102)||(4953405-4953457)
chr3 (16-84)||(45940215-45940283)
[»] chr7 (34 HSPs)
chr7 (16-244)||(21709158-21709386)
chr7 (16-213)||(26025728-26025924)
chr7 (17-146)||(26024888-26025017)
chr7 (16-128)||(21710547-21710659)
chr7 (296-363)||(26025287-26025354)
chr7 (296-363)||(21710193-21710259)
chr7 (18-104)||(10990568-10990654)
chr7 (16-96)||(10986695-10986775)
chr7 (16-82)||(45088244-45088310)
chr7 (16-77)||(40738193-40738254)
chr7 (18-82)||(45087067-45087131)
chr7 (18-77)||(19543492-19543551)
chr7 (223-258)||(26025704-26025739)
chr7 (16-94)||(3217734-3217812)
chr7 (16-94)||(45457084-45457162)
chr7 (38-95)||(14682973-14683030)
chr7 (16-84)||(30766674-30766742)
chr7 (19-102)||(38030332-38030413)
chr7 (16-87)||(26041802-26041873)
chr7 (16-83)||(43704945-43705012)
chr7 (16-94)||(7776937-7777015)
chr7 (16-94)||(27284242-27284320)
chr7 (16-94)||(27284589-27284667)
chr7 (16-94)||(31852062-31852140)
chr7 (16-94)||(36951056-36951134)
chr7 (16-94)||(39143491-39143569)
chr7 (16-94)||(40852140-40852218)
chr7 (16-94)||(45456734-45456812)
chr7 (18-83)||(42287313-42287378)
chr7 (321-353)||(21709415-21709447)
chr7 (16-84)||(23440909-23440977)
chr7 (321-353)||(26025648-26025680)
chr7 (16-84)||(37374447-37374515)
chr7 (16-84)||(47987327-47987395)
[»] chr2 (24 HSPs)
chr2 (16-102)||(36889719-36889805)
chr2 (16-102)||(36888338-36888424)
chr2 (16-72)||(35738363-35738419)
chr2 (16-84)||(7184881-7184949)
chr2 (16-86)||(34166843-34166914)
chr2 (16-94)||(43820308-43820386)
chr2 (17-82)||(13809426-13809491)
chr2 (16-85)||(13810569-13810636)
chr2 (16-102)||(15044739-15044825)
chr2 (16-94)||(26424804-26424882)
chr2 (16-69)||(3603504-3603557)
chr2 (19-84)||(40468049-40468114)
chr2 (16-104)||(5381536-5381624)
chr2 (16-84)||(19297527-19297595)
chr2 (17-77)||(3607036-3607098)
chr2 (16-94)||(4602797-4602875)
chr2 (37-95)||(8885679-8885737)
chr2 (16-82)||(20686669-20686735)
chr2 (16-94)||(33200028-33200106)
chr2 (16-94)||(34618502-34618580)
chr2 (16-102)||(39109475-39109561)
chr2 (16-69)||(8028966-8029019)
chr2 (37-86)||(38978912-38978961)
chr2 (16-84)||(32194819-32194887)
[»] scaffold0029 (2 HSPs)
scaffold0029 (16-82)||(71821-71887)
scaffold0029 (16-83)||(70669-70736)
[»] scaffold0394 (1 HSPs)
scaffold0394 (16-85)||(14270-14340)
[»] scaffold0220 (1 HSPs)
scaffold0220 (16-102)||(25963-26049)
[»] chr5 (27 HSPs)
chr5 (16-83)||(19718881-19718948)
chr5 (16-101)||(25333161-25333246)
chr5 (37-101)||(37192445-37192509)
chr5 (37-101)||(38384889-38384953)
chr5 (16-94)||(16669506-16669584)
chr5 (16-102)||(30112682-30112768)
chr5 (16-101)||(30645700-30645785)
chr5 (37-85)||(35463861-35463909)
chr5 (19-82)||(1983550-1983613)
chr5 (16-94)||(435554-435632)
chr5 (16-82)||(4959561-4959627)
chr5 (16-94)||(16670008-16670086)
chr5 (16-94)||(17339795-17339873)
chr5 (16-94)||(24100680-24100758)
chr5 (16-94)||(27851023-27851101)
chr5 (16-94)||(29962161-29962239)
chr5 (16-94)||(30012559-30012637)
chr5 (16-102)||(30644914-30645000)
chr5 (16-94)||(38312325-38312403)
chr5 (37-95)||(42766838-42766896)
chr5 (21-78)||(9378728-9378785)
chr5 (50-83)||(14662662-14662695)
chr5 (214-247)||(24648582-24648615)
chr5 (16-77)||(37966814-37966875)
chr5 (16-84)||(6793767-6793835)
chr5 (37-101)||(37191614-37191678)
chr5 (18-82)||(42381204-42381268)
[»] scaffold0194 (2 HSPs)
scaffold0194 (16-82)||(19237-19303)
scaffold0194 (18-82)||(18070-18134)
[»] scaffold0054 (2 HSPs)
scaffold0054 (16-102)||(57530-57616)
scaffold0054 (16-102)||(57022-57107)
[»] scaffold0006 (1 HSPs)
scaffold0006 (16-94)||(83366-83444)
[»] scaffold0259 (1 HSPs)
scaffold0259 (35-101)||(12061-12127)
[»] scaffold0150 (1 HSPs)
scaffold0150 (35-101)||(38901-38967)
[»] scaffold0002 (1 HSPs)
scaffold0002 (16-94)||(283154-283232)
[»] scaffold0430 (1 HSPs)
scaffold0430 (21-77)||(6233-6289)


Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 680
Target Start/End: Complemental strand, 44633830 - 44633173
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctcttttac 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44633830 cttaattgctattttggttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctcttttac 44633731  T
Q  118 ataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcc 217  Q
    ||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44633730 ataaattggtctcttccgttaattttattaaaaaaa-cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcc 44633632  T
Q  218 tcaccttcatcttcttcaacaaatcttcataaaaccttcatccaccttcatacaaatccagaagaagnnnnnnncttaaacaacaaaactcatcaaataa 317  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||    
T  44633631 tcgccttcatcttcttcaacaaatcttcataaaaccttcatccaccttcatacaaacccagaagaagaaaaaaacttaaacaacaaaactcatcaaataa 44633532  T
Q  318 aactttacctttatcttatgaaatccaaatctaaacccattatcattttatttgtgaatttctttaagatttggaatgactaannnnnnnnattttatta 417  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         ||||||||    
T  44633531 aattttacctttatcatatgaaatccaaatctaaacccattatcattttatttctgaatttctttaagatttggaatgactaattttt----ttttatta 44633436  T
Q  418 cattgacaacagcttcacccataacaccataagtagtcttcttcttcttccataggtcttcccgtaacaccataacaccatcaaatgaaaatttgttttc 517  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  44633435 caatgacaacagcttcacccataacaccataagtagtcttcttcttcttccataggtcttctcgtaacaccataacaccatcaaatgaaaattcgttttc 44633336  T
Q  518 agttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaactgcaaatcgcaaatcatcttcgagtttttcgtgtt 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  44633335 agttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaactgcaaattgcaaatcatcttcaagtttttcgtgtt 44633236  T
Q  618 cttgttcttattcatgtgttcctcttttgattgggtgctgaaacgtgttccaattctccttca 680  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44633235 cttgttcttattcatgtgttcctcttttgattgggtgctgaaacgtgttccaattctccttca 44633173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 39568564 - 39568333
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctcttttac 117  Q
    ||||||||||||||| || |||||||||||||||| |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||  ||||    
T  39568564 cttaattgctatttttgtcccttaactaattttttagtatcgttttggttccataattaataaaaagtttgtttgagtcctttaaatatgtctccgttac 39568465  T
Q  118 ataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcc 217  Q
    |||||||||||   |||||||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39568464 ataaattggtccattccgttaattttattaaaaaaa-cgttaactcaagcacacgtgtcattttcgcattggttgaaatttatattcatcttcttcctcc 39568366  T
Q  218 tcaccttcatcttcttcaacaaatcttcataaa 250  Q
    |||||||||||||||||||||||||||||||||    
T  39568365 tcaccttcatcttcttcaacaaatcttcataaa 39568333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 45378605 - 45378355
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttta 116  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||| |||| |||    
T  45378605 gcttaattgctattttcgtcccttaaataattttttggtatcgctttggtcccataattaataaaaattatgtttcagtcctttaaatatgcctctatta 45378506  T
Q  117 cataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctc 216  Q
     ||||||||||||  |||||||||||||||        |||||||||||||     ||||||||||||| |||||||||||||||||||||||| |||||    
T  45378505 tataaattggtctattccgttaattttatt--aaaaaacgttaactcaagcgtgtatgtcattttcgcaatggttggaatttatattcatcttcctcctc 45378408  T
Q  217 ctcaccttcatcttcttcaacaaatcttcataaaaccttcatccaccttcatacaa 272  Q
    ||||||||||   |||||||||||||||||||||||||||||   |||||||||||    
T  45378407 ctcaccttca---tcttcaacaaatcttcataaaaccttcataacccttcatacaa 45378355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 39269492 - 39269662
Alignment:
Q  89 tttgagtcctttaaatatgtctcttttacata--aattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcat 186  Q
    |||||||||||||||||||||||  |||||||  |||||||||| |||||||||||||||        |||||||| |||||||||||||||||||||||    
T  39269492 tttgagtcctttaaatatgtctccgttacatataaattggtctcttccgttaattttattaaaaaaa-cgttaacttaagcacacgtgtcattttcgcat 39269590  T
Q  187 tggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39269591 tggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 39269662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 39567063 - 39567193
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||    
T  39567063 ggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataattgataaaaagttcatttgagtcctttaaatatgtctctgtt 39567162  T
Q  116 acataaattggtctcatccgttaattttatt 146  Q
    ||||||||||||| | ||||| |||||||||    
T  39567163 acataaattggtcccttccgtcaattttatt 39567193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 39270852 - 39270722
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||   ||    
T  39270852 ggcttaattgctattttcgtcccttaacttattttttggtatcgttttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctacatt 39270753  T
Q  116 acataaattggtctcatccgttaattttatt 146  Q
    ||||||||||||| | ||||| |||||||||    
T  39270752 acataaattggtcccttccgtcaattttatt 39270722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 44632709 - 44632836
Alignment:
Q  19 ttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctcttttaca 118  Q
    |||||||||||||||||  ||||| |||||||||||||||| |||||||||| |||||||||||| ||  |||||||||||||||||||||||  |||||    
T  44632709 ttaattgctattttcgtctcttaattaattttttggtatcgttttggtcccaaaattaataaaaaattcgtttgagtcctttaaatatgtctccgttaca 44632808  T
Q  119 taaattggtctcatccgttaattttatt 146  Q
    |||||| ||  | |||||||||||||||    
T  44632809 taaattagttccttccgttaattttatt 44632836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 39270419 - 39270486
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| |||||||    
T  39270419 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatctaaatctaaaccctttatcat 39270486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 39567528 - 39567461
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  39567528 aacaacaaaactcatcagataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 39567461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 45377580 - 45377513
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||||||    
T  45377580 aacaacaaaactcatcaaataaaactttacatttatcatttgaaatccaaatctaaaccctttatcat 45377513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 9311021 - 9311090
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||| |||||||    
T  9311021 ggcttaattgctattttagtcccttatctaattttttggtatcgctttggtcccataactaaaaaaaagt 9311090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 14816570 - 14816625
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccat 71  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  14816570 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccat 14816625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 14829170 - 14829115
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccat 71  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  14829170 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccat 14829115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 9312231 - 9312165
Alignment:
Q  19 ttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    |||||||||||||| || | |||||||||||||||||||||||||| |||||||| ||| |||||||    
T  9312231 ttaattgctattttagtcctttaactaattttttggtatcgctttgatcccataactaaaaaaaagt 9312165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 22191958 - 22191876
Alignment:
Q  21 aattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaat 104  Q
    ||||| ||||||||| |||||| || |||||| |||||||||||||||| ||| ||||||||||| | |||||||| |||||||    
T  22191958 aattgttattttcgtcccttaagta-ttttttagtatcgctttggtcccgtaagtaataaaaagtctgtttgagtcttttaaat 22191876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 45377427 - 45377478
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtc 67  Q
    |||||||||| ||||||||| |||||| | ||||||||||||||||||||||    
T  45377427 ggcttaattgttattttcgtcccttaattgattttttggtatcgctttggtc 45377478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 10134608 - 10134674
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| |||| |||| || |||||| || || |||||||||||||||||||||||| ||||||||    
T  10134608 ggcttaaatgctctttttgtcccttaagtatttatttggtatcgctttggtcccataagtaataaaa 10134674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 22014010 - 22013932
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| |||||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  22014010 ggcttaaatgctcttttggttccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 22013932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 43633123 - 43633201
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||||||| |||||| || ||||||    
T  43633123 ggcttaaatgcttttttggtcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 43633201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 13463206 - 13463153
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtccc 69  Q
    |||||||||||| ||||||| |||||| | ||| ||||||||||||||||||||    
T  13463206 ggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggtccc 13463153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 45378339 - 45378302
Alignment:
Q  316 aaaactttacctttatcttatgaaatccaaatctaaac 353  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  45378339 aaaactttacctttatcatatgaaatccaaatctaaac 45378302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 21015265 - 21015213
Alignment:
Q  50 tttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    |||||||||||||||||||||||| ||||||||||| | |||| |||| ||||    
T  21015265 tttggtatcgctttggtcccataagtaataaaaagtctgtttgggtcccttaa 21015213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 2221594 - 2221672
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  2221594 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 2221672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 9115601 - 9115687
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||| ||||||||| || |||||| || ||  ||||||||||||||||||| ||| ||| |||||| || ||||| | ||||||    
T  9115601 ggcttaaatgctattttggtcccttaagtatttagttggtatcgctttggtcccctaactaaaaaaaagattgtttgaatactttaa 9115687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 9739843 - 9739765
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  9739843 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattctttgag 9739765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 11713200 - 11713278
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  11713200 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 11713278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 22013462 - 22013540
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  22013462 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 22013540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 27786543 - 27786465
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  27786543 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 27786465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 31445669 - 31445747
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  31445669 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 31445747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 41154617 - 41154695
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  41154617 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 41154695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 41155072 - 41154994
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  41155072 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 41154994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 42193779 - 42193857
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  42193779 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 42193857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 45123220 - 45123298
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  45123220 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 45123298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 14819428 - 14819391
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttg 53  Q
    ||||||||||||||||| || |||||||||||||||||    
T  14819428 ggcttaattgctattttagtcccttaactaattttttg 14819391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 22594318 - 22594403
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    ||||||| || | |||| || |||||| || || |||||||||||||||||||| ||| ||| |||||| || ||||||| |||||    
T  22594318 ggcttaaatgttcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacttta 22594403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 39568306 - 39568269
Alignment:
Q  316 aaaactttacctttatcttatgaaatccaaatctaaac 353  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  39568306 aaaactttacctttatcatttgaaatccaaatctaaac 39568269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 40229091 - 40229168
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    |||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  40229091 gcttaaatgcttttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 40229168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 2633871 - 2633803
Alignment:
Q  34 gttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||||| || ||  ||| ||||||||||||||| ||||||| |||||| || ||||||| ||||||    
T  2633871 gttccttaagtatttaattgttatcgctttggtcccttaattaaaaaaaagattgtttgagtactttaa 2633803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 39269687 - 39269719
Alignment:
Q  321 tttacctttatcttatgaaatccaaatctaaac 353  Q
    |||||||||||| ||||||||||||||||||||    
T  39269687 tttacctttatcatatgaaatccaaatctaaac 39269719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 680
Target Start/End: Complemental strand, 5660249 - 5659600
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||| ||   ||||| |||||||||||||||||| ||    
T  5660249 ggcttaattgctattttcgtccctaaactaattttttggtatcgttttggtctcataattaataaaa-gtccgtttgaatcctttaaatatgtctctgtt 5660151  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 215  Q
    ||||||||||||  | |||||||||||||||         ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5660150 acataaattggttccttccgttaattttattaaaaaatatgttaactcaagcacacgtgtcattttcacattggttggaatttatattcatcttcttcct 5660051  T
Q  216 cctcaccttcatcttcttcaacaaatcttcataaaaccttcatccaccttcatacaaatccagaagaagnnnnnnncttaaacaacaaaactcatcaaat 315  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||    || | |||   | || ||        ||||||||||||||||||||| ||    
T  5660050 cctcatcttcatcttcttcaacaaatcttcataaaaccttcatacaaacccagagaaa--aaaaaaaaaaaaaaaacttaaacaacaaaactcatcatat 5659953  T
Q  316 aaaactttacctttatcttatgaaatccaaatctaaacccattatcatttt-atttgtgaatttctttaagatttggaatgactaannnnnnnnatttta 414  Q
    || |||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||         |||||    
T  5659952 aatactttacctttatcatatgaaatcctaatctaaactcattatcattttaatttgtgaatttctttaagatttggaatgactaaatttt----tttta 5659857  T
Q  415 ttacattgacaacagcttcacccataacaccataagtagtcttcttcttcttccataggtcttcccgtaacaccataacaccatcaaatgaaaatttgtt 514  Q
    || || |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||         ||||||||||||||| ||||||| |||    
T  5659856 ttccaatgacaacaacttcacccataacaccataagtcgtcgtcttcttcttccataggtcttc--------tcataacaccatcaaacgaaaattcgtt 5659765  T
Q  515 ttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatt----tgcgttgttgaaactgcaaatcgcaaatcatcttcgagtttt 610  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||||||       |||| |||||| |||||| ||||||    
T  5659764 ttcaattcctcttaaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcatgcgttgttg-------aaattgcaaataatcttcaagtttt 5659672  T
Q  611 tcgtgttcttgttcttattcatgtgttcctcttttgatt-gggtgctgaaa-cgtgttccaattctccttca 680  Q
    | ||||||| ||||||| ||||||||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  5659671 ttgtgttctagttcttactcatgtgttcctcttttgattggggtactgaaatcgtgttccaattctccttca 5659600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 292 - 680
Target Start/End: Complemental strand, 21612531 - 21612144
Alignment:
Q  292 cttaaacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcatttta-tttgtgaatttctttaagatttg 390  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||||| |||| |||||||||||| ||||||||||    
T  21612531 cttaaacaacaaaacttatcaaataaaattttacctttatcatatgaaatccaaatcaaaactcattatcactttaatttgtgaatttccttaagatttg 21612432  T
Q  391 gaatgactaannnnnnnnattttattacattgacaacagcttcacccataacaccataagtagtcttcttcttcttc---------cataggtcttcccg 481  Q
    ||||||||||         ||| ||| || |||||||||||||||||||||||||||||||  ||||||||||||||         ||||||||||| |     
T  21612431 gaatgactaaatttt----tttcattccaatgacaacagcttcacccataacaccataagtcttcttcttcttcttcttcttcttccataggtcttctc- 21612337  T
Q  482 taacaccataacaccatcaaatgaaaatttgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaa 581  Q
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  21612336 -------ataacaccatcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgcttaaaatctttgatttgcgttgttgaaa 21612244  T
Q  582 ctgcaaatcgcaaatcatcttcgagtttttcgtgttcttgttcttattcatgtgttcctcttttgattgggtgctgaaa-cgtgttccaattctccttca 680  Q
    |||||||||| ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  21612243 ctgcaaatcggaaatcatcttcaagtttttcatgttctagttcttattcatgtgttcctcttttgattgggtacttaaatcgtgttccaattctccttca 21612144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 21282817 - 21283058
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| ||    
T  21282817 ggcttaattgctattttcgtcccttaattaatttttttgtatcgctttggtcccataattaataaaaagtctgtttgagtcttttaaatatgtctctgtt 21282916  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 215  Q
    ||||||||||||| | |||||||||||||||        |||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  21282917 acataaattggtcccttccgttaattttatt-aaaaaaacgttaactcaagcacatgtgtcattttcgcattagttggaatttatcttcatcttcttcct 21283015  T
Q  216 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21283016 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 21283058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 5659106 - 5659235
Alignment:
Q  18 cttaattgctatttt-cgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttta 116  Q
    ||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| |||    
T  5659106 cttaattgctatttttcgtcccttaactaattttttggtatcactttggtcccataattaataaaaagtctgtttgagtcctttaaatatgtctctgtta 5659205  T
Q  117 cataaattggtctcatccgttaattttatt 146  Q
    ||||||||||   | |||||||||||||||    
T  5659206 cataaattggctccttccgttaattttatt 5659235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 21611915 - 21612045
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |   ||||||| |||||||||||||||| ||    
T  21611915 ggcttaattgctattttcgtcccttaactaattttttggtatcgatttggtcccataattaataaaaaatccgtttgagttctttaaatatgtctctgtt 21612014  T
Q  116 acataaattggtctcatccgttaattttatt 146  Q
    |||||| |||||| | || ||||||||||||    
T  21612015 acataatttggtcccttcagttaattttatt 21612045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 21612933 - 21612831
Alignment:
Q  22 attgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctcttttacataa 121  Q
    |||| ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||  ||||| ||    
T  21612933 attgttattttcgtcccttaattaattttttggtatcgttttggtcccataattaataaaaagtctgtttgagtcctttaaatatgtctccgttacaaaa 21612834  T
Q  122 att 124  Q
    |||    
T  21612833 att 21612831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 292 - 384
Target Start/End: Complemental strand, 21612663 - 21612570
Alignment:
Q  292 cttaaacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcatttt-atttgtgaatttctttaa 384  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||||||| ||||    
T  21612663 cttaaacaacaaaactcatcaaataaaattttacctttatcatatgaaatccaaatcaaaactcattatcattttaatttgtgaatttccttaa 21612570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 21283557 - 21283624
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||  |||||||    
T  21283557 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccatttatcat 21283624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 29744781 - 29744850
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    ||||||||||||||||| || |||||||||||| |||||||||| ||||||||||||| ||| |||||||    
T  29744781 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagt 29744850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 29751198 - 29751129
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    ||||||||||||||||| || |||||||||||| |||||||||| ||||||||||||| ||| |||||||    
T  29751198 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagt 29751129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 20489498 - 20489413
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||||||||||||| || |||||  |  |||||| |||| ||||||||||||||| ||||||||||| | ||||||||||||||    
T  20489498 ggcttaattgctattttagtcccttatgtt-ttttttagtattgctttggtcccataagtaataaaaagtatgtttgagtcctttaa 20489413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 14403688 - 14403745
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataa 73  Q
    ||||||||||||||||| || ||||| ||||||| |||||||| ||||||||||||||    
T  14403688 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 14403745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 12260446 - 12260514
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    |||||||||||| ||||||| |||||| | ||| |||||||||||||||||||| ||| ||| ||||||    
T  12260446 ggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaag 12260514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 21612726 - 21612691
Alignment:
Q  223 ttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
    ||||||||||||||||||||||||||||||||||||    
T  21612726 ttcatcttcttcaacaaatcttcataaaaccttcat 21612691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 17971903 - 17971846
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataatt 75  Q
    |||||||| ||||||||||||||||||| |||  | |||||||||||||||| |||||    
T  17971903 cttaattgatattttcgttccttaactattttagtagtatcgctttggtcccttaatt 17971846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 20488261 - 20488346
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||||| |||||| ||  ||||| ||  ||||| ||||||||||||| | |||| ||||||||||||| ||| ||||||||||    
T  20488261 gcttaattgttattttagtctcttaagtatatttttagtatcgctttggttctataagtaataaaaagtttgtttcagtcctttaa 20488346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 21612808 - 21612771
Alignment:
Q  155 cgttaactcaagcacacgtgtcattttcgcattggttg 192  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21612808 cgttaactcaagcacacatgtcattttcgcattggttg 21612771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 29465755 - 29465816
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaa 77  Q
    |||||||||||||||||||| ||||||||||||  || ||||| |||||| ||| |||||||    
T  29465755 ggcttaattgctattttcgtcccttaactaattaattagtatcactttggccccttaattaa 29465816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 29467343 - 29467282
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaa 77  Q
    |||||||||||||||||||| ||||||||| || ||| |||| ||||||||||  |||||||    
T  29467343 ggcttaattgctattttcgtcccttaactatttatttagtattgctttggtcctttaattaa 29467282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 18683553 - 18683628
Alignment:
Q  19 ttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    |||| |||| |||| |||||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  18683553 ttaaatgctcttttagttccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 18683628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 21283961 - 21283922
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggt 55  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  21283961 ggcttaattgttattttcgtcccttaactaattttttggt 21283922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 959375 - 959309
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| |||| |||| || |||||| || || ||||| |||||||||||||||||| ||||||||    
T  959375 ggcttaaatgctcttttggtcccttaagtatttatttgggatcgctttggtcccataagtaataaaa 959309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 3618781 - 3618859
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  3618781 ggcttaaatgcttttttagtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 3618859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 17383735 - 17383813
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  17383735 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 17383813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 21271486 - 21271564
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  21271486 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 21271564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 21272177 - 21272099
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  21272177 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 21272099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 22498825 - 22498747
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  22498825 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 22498747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 28866478 - 28866392
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||| |||| |||| ||  ||||| || || |||||||||||||||||||| ||| ||| |||||| || ||||||| ||||||    
T  28866478 ggcttaaatgctcttttggtctcttaaatatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 28866392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 31739973 - 31739895
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  31739973 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 31739895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 20745585 - 20745653
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||||| || ||||||| |||||| | ||| ||||||||||||||| |||| ||| ||| ||||||    
T  20745585 ggcttaattactcttttcgtcccttaagttattatttggtatcgctttgatcccttaagtaaaaaaaag 20745653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 2e-91; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 702708 - 702467
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||||||||||||  ||    
T  702708 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaagtccgcttaagtcctttaaatatgtctccgtt 702609  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 215  Q
    ||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702608 acataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 702510  T
Q  216 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  702509 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 702467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 771007 - 770766
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||||||||||||  ||    
T  771007 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaagtccgcttaagtcctttaaatatgtctccgtt 770908  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 215  Q
    ||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  770907 acataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 770809  T
Q  216 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  770808 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 756487 - 756726
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||||||||||||  ||    
T  756487 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaagtccgcttaagtcctttaaatatgtctccgtt 756586  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 215  Q
    ||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  756587 acataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 756685  T
Q  216 cctcaccttcatcttcttcaacaaatcttcataaaaccttc 256  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  756686 cctcaccttcatcttcttcaacaaatcttcataaaaccttc 756726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 35060511 - 35060278
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||    
T  35060511 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctctgtt 35060412  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 215  Q
    ||||||||||||| | |||||||||||||||        | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35060411 acataaattggtcccttccgttaattttatt-aaaaaaacattaactcaagcacacgtgtcatttttgcattggttggaatttatattcatcttcttcct 35060313  T
Q  216 cctcaccttcatcttcttcaacaaatcttcataaa 250  Q
    ||||||||||| |||||||||||||||||||||||    
T  35060312 cctcaccttcaccttcttcaacaaatcttcataaa 35060278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 16039734 - 16039503
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctcttttac 117  Q
    ||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||   |||||||||||||||||||||||  ||||    
T  16039734 cttaattgctatttttgtcccttaactaattttttggtatcgtttcggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccattac 16039635  T
Q  118 ataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcc 217  Q
    ||||||||||| | |||||||||||||||        ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  16039634 ataaattggtcccttccgttaattttatt-aaaaaaacgttaactcaaacacacatgtcattttcgcattggttagaatttatattcatcttcttcctcc 16039536  T
Q  218 tcaccttcatcttcttcaacaaatcttcataaa 250  Q
    |||||||||||||||||||||||||||||||||    
T  16039535 tcaccttcatcttcttcaacaaatcttcataaa 16039503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 35055333 - 35055463
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||    
T  35055333 ggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaagtccatttgagtcctttaaatatgtctctgtt 35055432  T
Q  116 acataaattggtctcatccgttaattttatt 146  Q
    ||||||||||||| | ||||| |||||||||    
T  35055433 acataaattggtcccctccgtcaattttatt 35055463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 701633 - 701745
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||  ||    
T  701633 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccgtt 701732  T
Q  116 acataaattggtc 128  Q
    |||||||||||||    
T  701733 acataaattggtc 701745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 769932 - 770044
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||  ||    
T  769932 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccgtt 770031  T
Q  116 acataaattggtc 128  Q
    |||||||||||||    
T  770032 acataaattggtc 770044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 757557 - 757427
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||  ||    
T  757557 ggcttaattgctattttcatcccttaacttattttttggtatcgctttggtcccataattaataaaaagtcagtttgagtcctttaaatatgtctccgtt 757458  T
Q  116 acataaattggtctcatccgttaattttatt 146  Q
    ||||||||| ||  | ||||| |||||||||    
T  757457 acataaattagttccttccgtcaattttatt 757427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 16038275 - 16038366
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatg 107  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  16038275 ggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaaatccatttgagtcctttaaatatg 16038366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 702100 - 702033
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  702100 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 702033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 757085 - 757152
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  757085 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 757152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 770399 - 770332
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  770399 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 770332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 36220658 - 36220588
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtt 86  Q
    ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  36220658 ggcttaattgctattttagtaccttaactaattttttggtatcgttttggtcccataactaaaaaaaagtt 36220588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 35055804 - 35055737
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    ||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||| |||||||    
T  35055804 aacaacaaaactcatcagataaaattttacatttatcatatgaaatccaaatctaaaccctttatcat 35055737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 11038577 - 11038646
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    ||||||||||||||||| || ||||| ||||||||||||||| ||||||||||||||| ||| |||||||    
T  11038577 ggcttaattgctattttagtcccttagctaattttttggtattgctttggtcccataactaaaaaaaagt 11038646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 16038731 - 16038664
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    ||||||||||||||||| |||||||||||| ||| |  |||||||||||||||||||||| |||||||    
T  16038731 aacaacaaaactcatcagataaaactttacatttcttatatgaaatccaaatctaaaccctttatcat 16038664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 51646029 - 51645963
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||| ||| ||||    
T  51646029 ggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataactaaaaaaa 51645963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 4890827 - 4890915
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattt-tttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaat 104  Q
    ||||||||||||||||||| |||||| || ||| ||| |||||||||||  || |||| |||||||| |||| ||||||||||||||||    
T  4890827 gcttaattgctattttcgtcccttaagtagtttctttagtatcgctttgcccctataagtaataaaaggtttgtttgagtcctttaaat 4890915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 36219408 - 36219473
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    |||||||||||||||| || |||||||||||||||  |||||| ||||||||||||| ||| ||||    
T  36219408 gcttaattgctattttagtcccttaactaatttttgagtatcggtttggtcccataactaaaaaaa 36219473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 40681559 - 40681491
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    |||||||||||| ||||||| |||||| | ||| |||||||||||||||||||| ||| ||| ||||||    
T  40681559 ggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaag 40681491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 31487978 - 31488056
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| |||||||||    
T  31487978 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattatttgag 31488056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 1098453 - 1098376
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    |||||| |||| |||| |||||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  1098453 gcttaaatgctcttttggttccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 1098376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 16039474 - 16039437
Alignment:
Q  316 aaaactttacctttatcttatgaaatccaaatctaaac 353  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  16039474 aaaactttacctttatcatatgaaatccaaatctaaac 16039437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 35060252 - 35060215
Alignment:
Q  316 aaaactttacctttatcttatgaaatccaaatctaaac 353  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  35060252 aaaactttacctttatcatatgaaatccaaatctaaac 35060215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 4892169 - 4892081
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaat 104  Q
    |||||||||||||||||| | |||||| |  |||||| ||||||||| |||| ||||| ||||||||  | | ||||||||| ||||||    
T  4892169 ggcttaattgctattttcatcccttaagtttttttttagtatcgcttaggtcgcataagtaataaaagatctgtttgagtcccttaaat 4892081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 51399237 - 51399285
Alignment:
Q  37 ccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    |||||| || || |||||||||||||||||||||||| |||||||||||    
T  51399237 ccttaaatatttatttggtatcgctttggtcccataagtaataaaaagt 51399285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 33075071 - 33075036
Alignment:
Q  223 ttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
    ||||||||||||| ||||||||||||||||||||||    
T  33075071 ttcatcttcttcatcaaatcttcataaaaccttcat 33075036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 41845501 - 41845568
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaa 83  Q
    ||||||| |||| |||| || ||||||||||||  ||||||||||||||||||| ||| ||| |||||    
T  41845501 ggcttaaatgctcttttggtcccttaactaattaattggtatcgctttggtcccttaactaaaaaaaa 41845568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 1098053 - 1098131
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  1098053 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 1098131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 14525995 - 14525909
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||| |||| ||||  | ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||| ||||||    
T  14525995 ggcttaaatgctcttttgatcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 14525909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 17475397 - 17475475
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  17475397 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 17475475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 17475941 - 17475863
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  17475941 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 17475863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 20614674 - 20614596
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  20614674 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 20614596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 22679633 - 22679719
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||| ||||| ||| ||| |||||| || ||||||| ||||||    
T  22679633 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttagtcccttaactaaaaaaaagattgtttgagtactttaa 22679719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 25618436 - 25618514
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  25618436 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 25618514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 41610127 - 41610205
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  41610127 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 41610205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 42369567 - 42369489
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  42369567 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 42369489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 53594984 - 53595070
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||| ||| ||||| || | |||| || || |||||||||||||||||||| ||| ||| |||||| || ||||||| ||||||    
T  53594984 ggcttaaatgccattttggtcctttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 53595070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 56271274 - 56271196
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  56271274 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 56271196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 50551468 - 50551403
Alignment:
Q  20 taattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    |||||| |||||| || |||||| |||||||||||||||| ||| || |||||| ||| |||||||    
T  50551468 taattgttattttagtcccttaattaattttttggtatcggtttagttccataactaaaaaaaagt 50551403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 702443 - 702411
Alignment:
Q  321 tttacctttatcttatgaaatccaaatctaaac 353  Q
    |||||||||||| ||||||||||||||||||||    
T  702443 tttacctttatcatatgaaatccaaatctaaac 702411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 756759 - 756791
Alignment:
Q  321 tttacctttatcttatgaaatccaaatctaaac 353  Q
    |||||||||||| ||||||||||||||||||||    
T  756759 tttacctttatcatatgaaatccaaatctaaac 756791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 770742 - 770710
Alignment:
Q  321 tttacctttatcttatgaaatccaaatctaaac 353  Q
    |||||||||||| ||||||||||||||||||||    
T  770742 tttacctttatcatatgaaatccaaatctaaac 770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 9086290 - 9086354
Alignment:
Q  19 ttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaa 83  Q
    |||||| || ||||||| |||||| | ||| |||||||||||||||||||| ||| ||| |||||    
T  9086290 ttaatttctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaa 9086354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 11039788 - 11039740
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttg 64  Q
    ||||||||||||||||| ||   |||||||||||||||||||| |||||    
T  11039788 ggcttaattgctattttagtcatttaactaattttttggtatcactttg 11039740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 167; Significance: 4e-89; HSPs: 6)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 123424 - 123665
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||  ||    
T  123424 ggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccataattaataaaaagtccgcttgagtcctttaaatatgtctccgtt 123523  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 215  Q
    ||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  123524 acataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 123622  T
Q  216 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  123623 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 123665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 134300 - 134541
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||  ||    
T  134300 ggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccataattaataaaaagtccgcttgagtcctttaaatatgtctccgtt 134399  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 215  Q
    ||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134400 acataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 134498  T
Q  216 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  134499 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 134541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 129477 - 129347
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||  ||    
T  129477 ggcttaattgttattttcgtcccttaacttattttttggtatcactttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccgtt 129378  T
Q  116 acataaattggtctcatccgttaattttatt 146  Q
    ||||||||||||| | ||||| |||||||||    
T  129377 acataaattggtcccttccgtcaattttatt 129347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 128992 - 129059
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  128992 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 129059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 123694 - 123726
Alignment:
Q  321 tttacctttatcttatgaaatccaaatctaaac 353  Q
    |||||||||||| ||||||||||||||||||||    
T  123694 tttacctttatcatatgaaatccaaatctaaac 123726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 134565 - 134597
Alignment:
Q  321 tttacctttatcttatgaaatccaaatctaaac 353  Q
    |||||||||||| ||||||||||||||||||||    
T  134565 tttacctttatcatatgaaatccaaatctaaac 134597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 51599491 - 51599250
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||   ||||||| ||||||||||||||   ||    
T  51599491 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttgatcctataattaataaaaagtccgtttgagttctttaaatatgtcttcgtt 51599392  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 215  Q
    ||||||||||||| | |||||||||||||||        ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  51599391 acataaattggtcccttccgttaattttattaaaaaaa-cgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcca 51599293  T
Q  216 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  51599292 actcaccttcatcttcttcaacaaatcttcataaaaccttcat 51599250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 16962010 - 16962203
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||||||||| | ||||||||||||||||||||||   ||    
T  16962010 ggcttaattgctatttttgtcccttaactaattttttggtattgctttggtcctataattaataaaaagtctgtttgagtcctttaaatatgtcttcgtt 16962109  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttc 210  Q
    ||||||||||||| | |||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16962110 acataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttc 16962203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 16963484 - 16963354
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||  ||    
T  16963484 ggcttaattgttattttcgttccttaactaattttttggtatcgatttggtctcataattaataaaaagttcatttgagtcctttaaatatgtctccgtt 16963385  T
Q  116 acataaattggtctcatccgttaattttatt 146  Q
    ||||||| ||||| | ||||| |||||||||    
T  16963384 acataaactggtcccttccgtcaattttatt 16963354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 51597961 - 51598091
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||  ||    
T  51597961 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccgtt 51598060  T
Q  116 acataaattggtctcatccgttaattttatt 146  Q
    ||||||||||||| | ||||| |||||||||    
T  51598061 acataaattggtcccttccgtcaattttatt 51598091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 51598429 - 51598362
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  51598429 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 51598362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 16962999 - 16963066
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  16962999 aacaacaaaactcatcagataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 16963066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 46015915 - 46015846
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    |||||||||| |||||| || |||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  46015915 ggcttaattgttattttagtcccttaagtaattttttggtatcgctttggtcccataactaaaaaaaagt 46015846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 50682644 - 50682580
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaa 81  Q
    |||||||||||||||| || |||||| || ||||||||||||||||||||||||||| |||||||    
T  50682644 gcttaattgctattttggtcccttaattatttttttggtatcgctttggtcccataaataataaa 50682580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 33333467 - 33333404
Alignment:
Q  19 ttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    |||||||||||||| || ||||||||||||||||||||||  ||||||||||||||||| ||||    
T  33333467 ttaattgctattttagtcccttaactaattttttggtatcagtttggtcccataattaaaaaaa 33333404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 6241253 - 6241314
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaa 77  Q
    ||||||||| |||||||||||||||||||| || ||| |||||||||||||||| |||||||    
T  6241253 ggcttaatttctattttcgttccttaactatttatttagtatcgctttggtcccttaattaa 6241314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 24326582 - 24326667
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    ||||||| |||| |||| || ||||||||| || |||||||||||||||||||| ||| ||| |||||| |||||||||| |||||    
T  24326582 ggcttaaatgctcttttggtcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagtacttta 24326667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 24332372 - 24332287
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    ||||||| |||| |||| || | ||||||| || |||||||||||||||||||| ||| ||| |||||| |||||||||| |||||    
T  24332372 ggcttaaatgctcttttggtcctttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagtacttta 24332287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 46014701 - 46014770
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    ||||||||||||||||| ||   |||||||||||||||||||||||| | |||||||| ||| |||||||    
T  46014701 ggcttaattgctattttagtcatttaactaattttttggtatcgcttcgatcccataactaaaaaaaagt 46014770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 15073985 - 15073917
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||| ||||||||| |||||||||||| ||  ||||||||||||||||||| ||| ||| ||||||    
T  15073985 ggcttaaatgctattttggttccttaactatttaattggtatcgctttggtcccttaactaaaaaaaag 15073917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 47113172 - 47113097
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttattt 91  Q
    |||||||||||| ||||||| |||||| | ||| ||||||||||||||| |||| ||| ||| |||||| ||||||    
T  47113172 ggcttaattgctcttttcgtcccttaagttattatttggtatcgctttgatcccttaagtaaaaaaaagattattt 47113097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 6714761 - 6714683
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||||||| |||||| || ||||||    
T  6714761 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 6714683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 33332177 - 33332243
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||||||||||||| ||  |||||||| || |||||||||| ||||||||||||| ||| ||||    
T  33332177 ggcttaattgctattttagtctcttaactagttgtttggtatcggtttggtcccataactaaaaaaa 33332243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 6242755 - 6242694
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaa 77  Q
    |||||||||| ||||||| | ||||||||||||  || |||||||||||||||| |||||||    
T  6242755 ggcttaattgatattttcatcccttaactaattaattagtatcgctttggtcccttaattaa 6242694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 29021603 - 29021667
Alignment:
Q  37 ccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    ||||||||| || |||||||||||||||||||| ||| ||| |||||| || ||||||| |||||    
T  29021603 ccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacttta 29021667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 36143193 - 36143125
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    |||||||||||| ||||||| |||||| | ||| |||||||||| ||||||||| ||| ||| ||||||    
T  36143193 ggcttaattgctcttttcgtcccttaagttattatttggtatcgatttggtcccttaagtaaaaaaaag 36143125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 52750175 - 52750247
Alignment:
Q  29 ttttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    |||| |||||| ||||| || |||||||||||||||||||| ||| ||| |||||| || ||||||| |||||    
T  52750175 ttttggttcctcaactatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacttta 52750247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 7964113 - 7964180
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaa 83  Q
    ||||||| |||| |||| || ||||||||| || |||||||||||||||||||| ||| ||| |||||    
T  7964113 ggcttaaatgctcttttggtcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaa 7964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 31697117 - 31697200
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    ||||| |||| |||| || |||||| || || |||||||||||||||||||| ||| ||| |||||  |||||||||| |||||    
T  31697117 cttaaatgctcttttggtcccttaaatatttatttggtatcgctttggtcccttaactaaaaaaaaaattatttgagtacttta 31697200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 3798324 - 3798402
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  3798324 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 3798402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 3798768 - 3798690
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  3798768 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 3798690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 5804693 - 5804779
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||| |||| |||| || |||||| || || |||||||||||||||||||| ||| ||| |||||| || ||| ||| ||||||    
T  5804693 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttcagtactttaa 5804779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 6328388 - 6328302
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    |||||||||||| |||| || |||||| || ||  ||||||||||||||||||| ||| ||| |||||| || ||| ||| ||||||    
T  6328388 ggcttaattgctcttttggtcccttaagtatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttcagtactttaa 6328302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 10719356 - 10719422
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| |||| |||| || |||||| || || ||| |||||||||||||||||||| ||||||||    
T  10719356 ggcttaaatgctcttttggtcccttaagtatttatttagtatcgctttggtcccataaataataaaa 10719422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 10719691 - 10719625
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| |||| |||| || |||||| || || ||||||||||||||||| |||||| ||||||||    
T  10719691 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggttccataagtaataaaa 10719625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 14244166 - 14244244
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| |||||||||||| ||  ||| ||||||||||||||| ||| ||| |||||| || ||||||    
T  14244166 ggcttaaatgctcttttggttccttaactatttaattgatatcgctttggtcccttaactaaaaaaaagattgtttgag 14244244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 14244618 - 14244540
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  14244618 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 14244540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 24370115 - 24370193
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  24370115 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 24370193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 35368856 - 35368941
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||| |||| |||| || |||||| || ||  ||||||||||||||||||| ||||||| ||||| ||| ||||||| ||||||    
T  35368856 ggcttaaatgctcttttggtcccttaaatatttaattggtatcgctttggtcccttaattaa-aaaaaatttgtttgagtactttaa 35368941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 37483054 - 37483132
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  37483054 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 37483132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 37708192 - 37708270
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| ||||||||| || ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  37708192 ggcttaaatgctcttttggttccttaattatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 37708270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 38979671 - 38979749
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  38979671 ggcttaaatgctcttttggtcccttaactatttcattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 38979749  T

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Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 38980112 - 38980034
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  38980112 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 38980034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 44114576 - 44114498
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  44114576 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 44114498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 46448799 - 46448721
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  46448799 ggcttaaatgctcttttagtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 46448721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 50138495 - 50138573
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  50138495 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 50138573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 50227972 - 50227894
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  50227972 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 50227894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 32194052 - 32193987
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    |||||| |||| |||| |||||||||||| ||  ||||||||||||||||||| ||| ||| ||||    
T  32194052 gcttaaatgctcttttggttccttaactatttaattggtatcgctttggtcccttaactaaaaaaa 32193987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 46448218 - 46448295
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    |||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  46448218 gcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 46448295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 13834713 - 13834777
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| || |||| ||||||||||| ||||||| || ||| ||||||||| |||||| |||||    
T  13834713 cttaattactcttttggttccttaacttatttttttgtttcgttttggtcccttaattattaaaa 13834777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 29022594 - 29022522
Alignment:
Q  29 ttttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    |||| |||||||||||| || ||||||||| |||||||||| ||| ||| |||||| || ||| ||| |||||    
T  29022594 ttttggttccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttaagtacttta 29022522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 32193517 - 32193585
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||| |||| ||||  | ||||||||| ||  ||||||||||||||||||| ||||||| ||||||    
T  32193517 ggcttaaatgctcttttaatcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaag 32193585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 35369390 - 35369322
Alignment:
Q  27 tattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagt 95  Q
    |||||| ||||||||| || ||  ||| |||||||||| |||| |||||||||||||| || |||||||    
T  35369390 tattttggttccttaagtatttaattgatatcgctttgatcccttaattaataaaaagattgtttgagt 35369322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 45678712 - 45678780
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| ||||||    
T  45678712 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaag 45678780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 51599224 - 51599192
Alignment:
Q  321 tttacctttatcttatgaaatccaaatctaaac 353  Q
    |||||||||||| ||||||||||||||||||||    
T  51599224 tttacctttatcatatgaaatccaaatctaaac 51599192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 2e-79; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 21815909 - 21816139
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagt-cctttaaatatgtctctttt 115  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||   ||||||| ||||||||||||||||| ||    
T  21815909 gcttaattgctattttcgtcccttaactaattttttagtatcgctttggttccataattaataaaaagtccgtttgagtccctttaaatatgtctctgtt 21816008  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 215  Q
    ||||||||||||| | |||||||||||||||        ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21816009 acataaattggtcccttccgttaattttatt-aaaaaaacgttaactcaagcacacgtgtcatttttgcattggttggaatttatattcatcttcttcct 21816107  T
Q  216 cctcaccttcatcttcttcaacaaatcttcat 247  Q
    |||| |||||||||||||||||||||||||||    
T  21816108 cctcgccttcatcttcttcaacaaatcttcat 21816139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 21817457 - 21817328
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttta 116  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||    
T  21817457 gcttaattactattttcatcccttaactaattttttggtatcgctttggtcccataattaataaaaagtctgtttgagtcctttaaatatgtctctgtta 21817358  T
Q  117 cataaattggtctcatccgttaattttatt 146  Q
    ||||| || ||| | |||||||||||||||    
T  21817357 cataacttagtcccttccgttaattttatt 21817328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 14859191 - 14859103
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaat 104  Q
    |||||||||||||||||| | |||||| || |||||| ||||||||||||| |||||| ||||||||||| |||||||||| |||||||    
T  14859191 ggcttaattgctattttcttcccttaaatatttttttagtatcgctttggttccataagtaataaaaagtctatttgagtcatttaaat 14859103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 27688486 - 27688555
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    ||||||||||||||||| || |||||||||||| |||||||||| ||||||||||||| ||| |||||||    
T  27688486 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagt 27688555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 39992552 - 39992484
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||||| ||||||| || |||||||||||||||||||||| |||| ||||||||||||| ||||||    
T  39992552 ggcttaattactattttagtcccttaactaattttttggtatcacttttgtcccataattaaaaaaaag 39992484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 20184448 - 20184505
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataa 73  Q
    |||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||    
T  20184448 ggcttaattgttattttagtcccttaactaattttttggtatcggtttggtcccataa 20184505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 27695633 - 27695576
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataa 73  Q
    ||||||||||||||||| || |||||||||||| |||||||||| |||||||||||||    
T  27695633 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataa 27695576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 39991507 - 39991572
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaa 83  Q
    |||||||| |||||| |||||||||||||||||||| ||||| |||| |||||||| ||| |||||    
T  39991507 cttaattgttattttagttccttaactaattttttgatatcgttttgatcccataactaaaaaaaa 39991572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 32304232 - 32304300
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    |||||||||||| ||||||| |||||| | ||| |||||||||||||||||||| ||| ||| ||||||    
T  32304232 ggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaag 32304300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 20185871 - 20185800
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagttt 87  Q
    ||||||||||||||||| || | ||| |||||||||| |||||| |||| |||||||| ||| |||||||||    
T  20185871 ggcttaattgctattttagtccattacctaatttttttgtatcggtttgatcccataactaaaaaaaagttt 20185800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 40503790 - 40503711
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagt 95  Q
    |||||||||||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || |||||||    
T  40503790 ggcttaattgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagt 40503711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 43464812 - 43464878
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| |||| |||| || |||||| || || |||||||||||||||||||||||| ||||||||    
T  43464812 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccataagtaataaaa 43464878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 45940738 - 45940660
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| ||||||||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  45940738 ggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 45940660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 36982651 - 36982735
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    |||| |||| |||||||||| |||||| |  |||||  || ||||||||||||||||| ||||||||||| | |||||||||||||    
T  36982651 ggctcaatttctattttcgtcccttaattt-tttttaagtgtcgctttggtcccataagtaataaaaagtctgtttgagtccttta 36982735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 37008090 - 37008174
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    |||| |||| |||||||||| |||||| |  |||||  || ||||||||||||||||| ||||||||||| | |||||||||||||    
T  37008090 ggctcaatttctattttcgtcccttaattt-tttttaagtgtcgctttggtcccataagtaataaaaagtctgtttgagtccttta 37008174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 36982928 - 36982972
Alignment:
Q  302 aaaactcatcaaataaaactttacctttatcttatgaaatccaaa 346  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||    
T  36982928 aaaactcatcaaataaaattttacctttatcatatgaaattcaaa 36982972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 37008367 - 37008411
Alignment:
Q  302 aaaactcatcaaataaaactttacctttatcttatgaaatccaaa 346  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||    
T  37008367 aaaactcatcaaataaaattttacctttatcatatgaaattcaaa 37008411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 49221510 - 49221574
Alignment:
Q  19 ttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaa 83  Q
    ||||||| |||||| || |||||||||||||||||||||||  || ||||||||| ||| |||||    
T  49221510 ttaattgttatttttgtcccttaactaattttttggtatcgggttagtcccataactaaaaaaaa 49221574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 27990326 - 27990252
Alignment:
Q  20 taattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagt 95  Q
    |||||||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| ||||||||||    
T  27990326 taattgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaa-aaaaagattatttgagt 27990252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 28919124 - 28919175
Alignment:
Q  51 ttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||||||||||||||| ||||||| |||||| || ||||||| ||||||    
T  28919124 ttggtatcgctttggtcccttaattaaaaaaaagattgtttgagtactttaa 28919175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 36982856 - 36982891
Alignment:
Q  223 ttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
    ||||||||||||| ||||||||||||||||||||||    
T  36982856 ttcatcttcttcatcaaatcttcataaaaccttcat 36982891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 37008295 - 37008330
Alignment:
Q  223 ttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
    ||||||||||||| ||||||||||||||||||||||    
T  37008295 ttcatcttcttcatcaaatcttcataaaaccttcat 37008330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 12739964 - 12740042
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  12739964 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 12740042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 13302014 - 13301948
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| |||| |||| || |||||| || || |||||||||||||||||||| ||| ||||||||    
T  13302014 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccgtaagtaataaaa 13301948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 13312670 - 13312604
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| |||| |||| || |||||| || || |||||||||||||||||||| ||| ||||||||    
T  13312670 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccgtaagtaataaaa 13312604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 13355175 - 13355253
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| || | |||| || ||||||||| ||  ||||||||||||||||||| ||||||| |||||| || ||||||    
T  13355175 ggcttaaatgttcttttagtcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 13355253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 21816177 - 21816215
Alignment:
Q  292 cttaaacaacaaaactcatcaaataaaactttaccttta 330  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  21816177 cttaaacaacaaaattcatcaaaaaaaactttaccttta 21816215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 24243055 - 24242977
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  24243055 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 24242977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 24244831 - 24244765
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| ||||||||| || |||||| || || ||||||||||||||| | |||||| ||||||||    
T  24244831 ggcttaaatgctattttggtcccttaagtatttatttggtatcgctttgataccataagtaataaaa 24244765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 50530625 - 50530703
Alignment:
Q  24 tgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||||| || |||||| || ||  ||||||||||||||||||| ||| ||| |||||| || ||||||| ||||||    
T  50530625 tgctattttagtcccttaagtatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 50530703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 52857343 - 52857273
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtt 86  Q
    ||||||| |||| |||| || |||||| || || |||||||||||||||||||| ||| ||| ||||||||    
T  52857343 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccttaaataaaaaaaagtt 52857273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 54831876 - 54831934
Alignment:
Q  37 ccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagt 95  Q
    ||||||||| || |||||||||||||||||||| ||| ||| |||||| || |||||||    
T  54831876 ccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagt 54831934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 12740412 - 12740335
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttga 93  Q
    ||||||| |||| |||||||||||||| || ||  ||||||||||| ||||||| ||| ||| | |||| ||||||||    
T  12740412 ggcttaaatgctcttttcgttccttaattatttaattggtatcgctatggtcccttaactaaaagaaagattatttga 12740335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 17509464 - 17509517
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtccc 69  Q
    |||||||||| | ||||||| |||||| | ||| ||||||||||||||||||||    
T  17509464 ggcttaattgttcttttcgtcccttaagttattatttggtatcgctttggtccc 17509517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 36982826 - 36982867
Alignment:
Q  172 gtgtcattttcgcattggttggaatttatattcatcttcttc 213  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  36982826 gtgtcatcttcgcattggctggaatatatattcatcttcttc 36982867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 37008265 - 37008306
Alignment:
Q  172 gtgtcattttcgcattggttggaatttatattcatcttcttc 213  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  37008265 gtgtcatcttcgcattggctggaatatatattcatcttcttc 37008306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 39198418 - 39198495
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    |||||| | ||||||| || |||||| || ||  ||||||||||||||||||| ||||||| |||||| || ||||||    
T  39198418 gcttaaatactattttggtcccttaattatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 39198495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 42540163 - 42540216
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtccc 69  Q
    ||||||||| || ||||||| |||||| | ||| ||||||||||||||||||||    
T  42540163 ggcttaattactcttttcgtcccttaagttattatttggtatcgctttggtccc 42540216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 4953457 - 4953405
Alignment:
Q  50 tttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    |||||||||| ||||||||||||| ||||||||||| | ||| ||||| ||||    
T  4953457 tttggtatcgttttggtcccataagtaataaaaagtctgtttaagtcccttaa 4953405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 45940215 - 45940283
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| ||||||    
T  45940215 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaag 45940283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 21709158 - 21709386
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||   ||    
T  21709158 ggcttaattgctattttcgtcccttaactaattttttagtatcgctttggtcccataattaataaaaagtccgtttaagtcctttaaatatgtcttcgtt 21709257  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 215  Q
    ||||||||||||| | |||||||||||||||        ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||     
T  21709258 acataaattggtcccttccgttaattttattaaaaaaaacgttaactcaagcacacgtgtcatttttgcattggttagaatttatattcatcttcttcca 21709357  T
Q  216 cctcaccttcatcttcttcaacaaatctt 244  Q
     |||||||||||||| |||||||||||||    
T  21709358 actcaccttcatctttttcaacaaatctt 21709386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 26025924 - 26025728
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    ||||||||||||||||| || | ||||||||||| ||||||| |||||| | ||||||||||||||||||    ||||||||||||||||||||||  ||    
T  26025924 ggcttaattgctatttttgtcctttaactaatttcttggtattgctttgattccataattaataaaaagtccgcttgagtcctttaaatatgtctccgtt 26025825  T
Q  116 acataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 213  Q
    ||||||||||||||| |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26025824 acataaattggtctcttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 26025728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 26024888 - 26025017
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttta 116  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||  |||    
T  26024888 gcttaattgctatcttcgtcccttaacttattttttggtatcgctttggtcccataattaataaaaagtctgtttgagtcctttaaatatgtctccgtta 26024987  T
Q  117 cataaattggtctcatccgttaattttatt 146  Q
    |||||||||||| | ||||| |||||||||    
T  26024988 cataaattggtcccttccgtcaattttatt 26025017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 21710659 - 21710547
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctctttt 115  Q
    |||| ||||| |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||  ||    
T  21710659 ggctgaattgatatttttgtcccttaacttattttttggtatcgctttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccgtt 21710560  T
Q  116 acataaattggtc 128  Q
    |||||||||||||    
T  21710559 acataaattggtc 21710547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 26025354 - 26025287
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  26025354 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 26025287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 21710193 - 21710259
Alignment:
Q  296 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 363  Q
    ||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||    
T  21710193 aacaacaaaacacatcaaa-aaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 21710259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 10990654 - 10990568
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaat 104  Q
    ||||||| ||||||||||  ||||  || |||||| ||||||||||| |||||||| ||||||||||| | ||||||||||||||||    
T  10990654 cttaattactattttcgtctcttatgtatttttttagtatcgctttgatcccataagtaataaaaagtctgtttgagtcctttaaat 10990568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 10986695 - 10986775
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtc 96  Q
    ||||||||| || ||||||| ||||||||| ||||||||||||| |||| ||| |||||| ||||||||||| ||| ||||    
T  10986695 ggcttaatttctcttttcgtcccttaactatttttttggtatcgttttgctcctataattgataaaaagtttgtttaagtc 10986775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 45088310 - 45088244
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||||||||||||| || |||||||||||| |||||||||  ||||||||||||| ||| ||||    
T  45088310 ggcttaattgctattttagtcccttaactaattgtttggtatcagtttggtcccataactaaaaaaa 45088244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 40738193 - 40738254
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaa 77  Q
    |||||||||||||||||||| ||| ||||||||  || |||||||||||||||| |||||||    
T  40738193 ggcttaattgctattttcgtccctcaactaattaattagtatcgctttggtcccttaattaa 40738254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 45087067 - 45087131
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    |||||||| |||||| || | ||||||||||||||||||||| ||||||||||||| ||| ||||    
T  45087067 cttaattgttattttagtcctttaactaattttttggtatcggtttggtcccataactaaaaaaa 45087131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 19543492 - 19543551
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaa 77  Q
    |||||||||||||||||| ||||||||| || ||| ||||||||||| |||| |||||||    
T  19543492 cttaattgctattttcgtcccttaactatttatttagtatcgctttgatcccttaattaa 19543551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 26025739 - 26025704
Alignment:
Q  223 ttcatcttcttcaacaaatcttcataaaaccttcat 258  Q
    ||||||||||||||||||||||||||||||||||||    
T  26025739 ttcatcttcttcaacaaatcttcataaaaccttcat 26025704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 3217812 - 3217734
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| |||||||||    
T  3217812 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattatttgag 3217734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 45457162 - 45457084
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||||||| |||||| || ||||||    
T  45457162 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 45457084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 14683030 - 14682973
Alignment:
Q  38 cttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagt 95  Q
    |||||||| || |||||||||||||||||||| ||| ||| |||||| ||||||||||    
T  14683030 cttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagt 14682973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 30766742 - 30766674
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    |||||||||||| ||||||| |||||| | ||| ||||||||| |||||||||| ||| ||| ||||||    
T  30766742 ggcttaattgcttttttcgtcccttaagttattatttggtatcactttggtcccttaagtaaaaaaaag 30766674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 38030332 - 38030413
Alignment:
Q  19 ttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    |||||| |||||||||| |||||  |  |||||| ||||||||||| |||||||| ||||||||||| ||||| | ||||||||    
T  38030332 ttaatttctattttcgtcccttacgt--ttttttagtatcgctttgatcccataagtaataaaaagtctatttcaatcctttaa 38030413  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 26041873 - 26041802
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagttt 87  Q
    ||||||| |||| |||| || |||||| || || ||||||||||||||||||| |||| |||||||| ||||    
T  26041873 ggcttaaatgctcttttggtcccttaaatatttatttggtatcgctttggtcctataagtaataaaaggttt 26041802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 43704945 - 43705012
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaa 83  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||||||| |||||    
T  43704945 ggcttaaatgcttttttggtcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaa 43705012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 7777015 - 7776937
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  7777015 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 7776937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 27284242 - 27284320
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  27284242 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 27284320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 27284667 - 27284589
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  27284667 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 27284589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 31852140 - 31852062
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  31852140 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 31852062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 36951056 - 36951134
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  |||||||||||||||| || ||| ||| |||||| |||||||||    
T  36951056 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggttccttaactaaaaaaaagattatttgag 36951134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 39143569 - 39143491
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  39143569 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 39143491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 40852218 - 40852140
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  40852218 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 40852140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 45456734 - 45456812
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  45456734 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 45456812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 42287313 - 42287378
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaa 83  Q
    ||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||||||| |||||    
T  42287313 cttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaattaagaaaaa 42287378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 21709415 - 21709447
Alignment:
Q  321 tttacctttatcttatgaaatccaaatctaaac 353  Q
    |||||||||||| ||||||||||||||||||||    
T  21709415 tttacctttatcatatgaaatccaaatctaaac 21709447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 23440977 - 23440909
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||| |||| ||||  ||||||||||| ||  ||||||||||||||||||| ||| ||| ||||||    
T  23440977 ggcttaaatgctcttttgattccttaactatttaattggtatcgctttggtcccttaactaaaaaaaag 23440909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 26025680 - 26025648
Alignment:
Q  321 tttacctttatcttatgaaatccaaatctaaac 353  Q
    |||||||||||| ||||||||||||||||||||    
T  26025680 tttacctttatcatatgaaatccaaatctaaac 26025648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 37374515 - 37374447
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| ||||||    
T  37374515 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaag 37374447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 47987327 - 47987395
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| ||||||    
T  47987327 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaag 47987395  T

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Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 36889805 - 36889719
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  36889805 ggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccataattaataaaaagtctatttgaatcctttaa 36889719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 36888338 - 36888424
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||    
T  36888338 ggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataactaataaaaagtctgtttgagtcctttaa 36888424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 35738363 - 35738419
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccata 72  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  35738363 ggcttaattactattttcgttccttaactaattttttggtatcgctttggttccata 35738419  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 7184881 - 7184949
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| |||| |||||||| ||| ||||||    
T  7184881 ggcttaattgctattttagtctcttaactaattttttggtatcggtttgatcccataactaaaaaaaag 7184949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 34166843 - 34166914
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaatttt-ttggtatcgctttggtcccataattaataaaaagtt 86  Q
    |||||||||||||||||||| |||||| || |||| ||||||||  ||| ||||||||||||||||||||||    
T  34166843 ggcttaattgctattttcgtcccttaaatattttttttggtatcagttttgtcccataattaataaaaagtt 34166914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 43820386 - 43820308
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| ||||||||| |||||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  43820386 ggcttaaatgctattttggttccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 43820308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 13809426 - 13809491
Alignment:
Q  17 gcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    |||||||| ||||||| |  |||||||||||||||||||||||||||| ||| |||||||| ||||    
T  13809426 gcttaatttctattttaggcccttaactaattttttggtatcgctttgatcctataattaaaaaaa 13809491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 13810636 - 13810569
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    ||||||||||| ||||| ||  |||||||||||||  ||||||||||||||||||||| ||| |||||||    
T  13810636 ggcttaattgcaattttagtctcttaactaatttt--ggtatcgctttggtcccataactaaaaaaaagt 13810569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 15044739 - 15044825
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||| ||||||||| || ||||||||| ||  ||||||||||||||||||  ||| ||| |||||| || ||||||| ||||||    
T  15044739 ggcttaagtgctattttggtcccttaactatttaattggtatcgctttggtcctttaactaaaaaaaagattgtttgagtactttaa 15044825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 26424882 - 26424804
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||||||| |||||| || ||||||    
T  26424882 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 26424804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 3603504 - 3603557
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtccc 69  Q
    |||||||||| ||||||||| ||||||||| || ||| ||||||||||||||||    
T  3603504 ggcttaattgttattttcgtcccttaactatttatttagtatcgctttggtccc 3603557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 40468049 - 40468114
Alignment:
Q  19 ttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||||| ||||||| |||||| | ||| |||||||||||||||||||| ||| ||| ||||||    
T  40468049 ttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaag 40468114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 5381536 - 5381624
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaat 104  Q
    ||||||| |||| |||| || |||||| || ||  ||||||||||||||||||| ||| ||| |||||| || ||||||| ||||||||    
T  5381536 ggcttaaatgctcttttggtcccttaagtatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaaat 5381624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 19297527 - 19297595
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    |||||||||||| ||||||| |||||| | ||| |||||||||| ||||||||| ||| ||| ||||||    
T  19297527 ggcttaattgctcttttcgtcccttaagttattatttggtatcgttttggtcccttaagtaaaaaaaag 19297595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 3607098 - 3607036
Alignment:
Q  17 gcttaattgctattttcgttccttaactaatttt--ttggtatcgctttggtcccataattaa 77  Q
    |||||||||||||||||||||||||| |||||||  || ||||||||||| | || |||||||    
T  3607098 gcttaattgctattttcgttccttaattaattttaattagtatcgctttgattccttaattaa 3607036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 4602875 - 4602797
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  4602875 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 4602797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 8885679 - 8885737
Alignment:
Q  37 ccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagt 95  Q
    |||||| || || |||||||||||||||||||| ||| ||| |||||| ||||||||||    
T  8885679 ccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagt 8885737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 20686735 - 20686669
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    |||||||||||| ||||||| |||||| | ||| |||||||| ||||||||||| ||| ||| ||||    
T  20686735 ggcttaattgcttttttcgtcccttaagttattatttggtattgctttggtcccttaagtaaaaaaa 20686669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 33200028 - 33200106
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| ||||||||| || | ||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  33200028 ggcttaaatgctattttggtcctttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 33200106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 34618580 - 34618502
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  34618580 ggcttaaatgctcttttagtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 34618502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 39109561 - 39109475
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||| |||| | || || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||| ||||||    
T  39109561 ggcttaaatgctctattggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 39109475  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 8028966 - 8029019
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtccc 69  Q
    |||||||||||||||| |||  ||||| | ||| ||||||||||||||||||||    
T  8028966 ggcttaattgctatttccgtctcttaagttattatttggtatcgctttggtccc 8029019  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 38978961 - 38978912
Alignment:
Q  37 ccttaactaattttttggtatcgctttggtcccataattaataaaaagtt 86  Q
    |||||| || || |||||||||||||||||||||||  ||||||||||||    
T  38978961 ccttaaatatttatttggtatcgctttggtcccatatgtaataaaaagtt 38978912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 32194887 - 32194819
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| ||||||    
T  32194887 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaag 32194819  T

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Target: scaffold0029 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 71887 - 71821
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  71887 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccataactaaaaaaa 71821  T

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Target: scaffold0029; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 70669 - 70736
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaa 83  Q
    ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  70669 ggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccataactaaaaaaaa 70736  T

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Target: scaffold0394 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 14270 - 14340
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaa-ttttttggtatcgctttggtcccataattaataaaaagt 85  Q
    ||||||||||||||||| || |||||||||| ||||||||||||| ||||||||||||| ||| |||||||    
T  14270 ggcttaattgctattttagtcccttaactaatttttttggtatcggtttggtcccataactaaaaaaaagt 14340  T

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Target: scaffold0220 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 25963 - 26049
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||| |||| |||| || |||||| || || |||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||    
T  25963 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccataagtaataaaaagtttgtttaagtcccttaa 26049  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 19718948 - 19718881
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaa 83  Q
    ||||||||||||||||| || | |||||||||||||||||||||||||| ||| |||| ||| |||||    
T  19718948 ggcttaattgctattttagtcctttaactaattttttggtatcgctttgatcctataactaaaaaaaa 19718881  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 25333246 - 25333161
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    ||||||| ||||||||| || ||||||||| ||  ||||||||||||||||||  ||||||| |||||| || ||||||| |||||    
T  25333246 ggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcctttaattaaaaaaaagattgtttgagtacttta 25333161  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 37192509 - 37192445
Alignment:
Q  37 ccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    ||||||||| || |||||||||||||||||||| ||| ||| |||||| |||||||||| |||||    
T  37192509 ccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagtacttta 37192445  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 38384889 - 38384953
Alignment:
Q  37 ccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    ||||||||| || |||||||||||||||||||| ||||||| |||||| || ||||||| |||||    
T  38384889 ccttaactatttatttggtatcgctttggtcccttaattaaaaaaaagattgtttgagtacttta 38384953  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 16669506 - 16669584
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| |||||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  16669506 ggcttaaatgctcttttggttccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 16669584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 30112768 - 30112682
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    |||||||||||| |||| || |||||| || ||  ||||||||||||||||||| ||| ||| |||||| || ||||||| ||||||    
T  30112768 ggcttaattgctcttttagtcccttaagtatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagttctttaa 30112682  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 30645785 - 30645700
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    ||||||| |||| |||| || |||||| || || |||||||||||||||||||| ||| ||| |||||| || ||||||| |||||    
T  30645785 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacttta 30645700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 35463909 - 35463861
Alignment:
Q  37 ccttaactaattttttggtatcgctttggtcccataattaataaaaagt 85  Q
    |||||| || || |||||||||||||||||||||||| |||||||||||    
T  35463909 ccttaaatatttatttggtatcgctttggtcccataagtaataaaaagt 35463861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 1983613 - 1983550
Alignment:
Q  19 ttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    |||| |||| |||| ||||||||| || || ||| |||||||||||||||||||| ||||||||    
T  1983613 ttaaatgctcttttggttccttaagtatttatttagtatcgctttggtcccataagtaataaaa 1983550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 435554 - 435632
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  435554 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 435632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 4959561 - 4959627
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| ||||||||| || ||||||||| ||  ||||||||||||||||||| ||| ||| ||||    
T  4959561 ggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaa 4959627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 16670086 - 16670008
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  16670086 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 16670008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 17339795 - 17339873
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  17339795 ggcttaaatgcttttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 17339873  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 24100758 - 24100680
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  24100758 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 24100680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 27851101 - 27851023
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  27851101 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 27851023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 29962239 - 29962161
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  29962239 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 29962161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 30012559 - 30012637
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  30012559 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 30012637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 30644914 - 30645000
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    ||||||| |||| |||| || |||||| || || |||||||||||| ||||||| ||| ||| |||||| || ||||||| ||||||    
T  30644914 ggcttaaatgctcttttggtcccttaaatatttatttggtatcgctatggtcccttaactaaaaaaaagattgtttgagtactttaa 30645000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 38312325 - 38312403
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  38312325 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 38312403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 42766838 - 42766896
Alignment:
Q  37 ccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagt 95  Q
    ||||||||| || |||||||||||||||||||| ||| ||| |||||| || |||||||    
T  42766838 ccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagt 42766896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 9378785 - 9378728
Alignment:
Q  21 aattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaat 78  Q
    |||||||| ||| || | ||||||| |||||||||||| |||||||| ||||||||||    
T  9378785 aattgctaatttggtccattaactatttttttggtatcactttggtcgcataattaat 9378728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 14662695 - 14662662
Alignment:
Q  50 tttggtatcgctttggtcccataattaataaaaa 83  Q
    |||||||||||||||||||||||| |||||||||    
T  14662695 tttggtatcgctttggtcccataagtaataaaaa 14662662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 24648615 - 24648582
Alignment:
Q  214 ctcctcaccttcatcttcttcaacaaatcttcat 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  24648615 ctcctcaccttcatcatcttcaacaaatcttcat 24648582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 37966814 - 37966875
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaa 77  Q
    |||||||||| ||||||||| ||||||||| ||  || ||||  ||||||||||||||||||    
T  37966814 ggcttaattgttattttcgtcccttaactatttaattagtattactttggtcccataattaa 37966875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 6793767 - 6793835
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaag 84  Q
    |||||||||||| |||| || |||||| | ||| ||||||||| |||||||||| ||| ||| ||||||    
T  6793767 ggcttaattgctctttttgtcccttaagttattatttggtatcactttggtcccttaagtaaaaaaaag 6793835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 37191614 - 37191678
Alignment:
Q  37 ccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    ||||||||  || |||||||||||||||||||| ||| ||| |||||| || ||||||| |||||    
T  37191614 ccttaactgtttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacttta 37191678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 42381204 - 42381268
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| || |||| ||||||||||| |||||||||| ||| ||||||||| ||| || |||||    
T  42381204 cttaattactcttttggttccttaacttattttttggtttcgttttggtcccttaactattaaaa 42381268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 19303 - 19237
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    |||||||||| || ||| |||||||||||||||||||| ||||| ||||||||||||| ||| ||||    
T  19303 ggcttaattgttactttagttccttaactaattttttgatatcggtttggtcccataactaaaaaaa 19237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 18070 - 18134
Alignment:
Q  18 cttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaa 82  Q
    ||||||| ||||||| || |||||||||||||||  |||||| ||||||| ||||| ||| ||||    
T  18070 cttaattactattttagtcccttaactaatttttgagtatcggtttggtctcataactaaaaaaa 18134  T

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Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 57616 - 57530
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    |||||||||| | |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||| ||||||    
T  57616 ggcttaattgttcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 57530  T

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Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 57022 - 57107
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaa 102  Q
    |||||||||| | |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||| ||||||    
T  57022 ggcttaattgttcttttggtcccttaactatttaattggtatcgctttggtcccttaactaa-aaaaagattgtttgagtactttaa 57107  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 83444 - 83366
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| ||||||||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  83444 ggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 83366  T

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Target: scaffold0259 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 12061 - 12127
Alignment:
Q  35 ttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    |||||||| || || |||||||||||||||||||| ||| ||| |||||| || ||||||| |||||    
T  12061 ttccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacttta 12127  T

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Target: scaffold0150 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 38901 - 38967
Alignment:
Q  35 ttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtccttta 101  Q
    |||||||| || || |||||||||||||||||||| ||| ||| |||||| || ||||||| |||||    
T  38901 ttccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacttta 38967  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 283232 - 283154
Alignment:
Q  16 ggcttaattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgag 94  Q
    ||||||| |||| |||| || ||||||||| ||  ||||||||||||||||||| ||| ||| |||||| || ||||||    
T  283232 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 283154  T

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Target: scaffold0430 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 6289 - 6233
Alignment:
Q  21 aattgctattttcgttccttaactaattttttggtatcgctttggtcccataattaa 77  Q
    |||||||||||||||  |||||||| ||  || ||||||||||| ||||||||||||    
T  6289 aattgctattttcgtctcttaactatttaattagtatcgctttgatcccataattaa 6233  T

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