View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553R-Insertion-6 (Length: 553)
Name: NF1553R-Insertion-6
Description: NF1553R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553R-Insertion-6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 11 - 553
Target Start/End: Complemental strand, 52761294 - 52760740
Alignment:
| Q |
11 |
ttctcggaatttcattgttatccgatgcagttgccccggtaaactccccagcagtgtctccgacaagtaattctccttcgccaagtgtggtacactctac |
110 |
Q |
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| T |
52761294 |
ttctcggaatttcgttgttatccgatgcagttgccccggtaaactccccagcagtgtctccgacaagtaattctccttcgccaagtgtggtacactctcc |
52761195 |
T |
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| Q |
111 |
aataatgtctccggctgtgaatgctccggcaccaagcgcaacaaacacccatgctccggtcccaagtcctaccagcaccaacgctccggcaccaagca-- |
208 |
Q |
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| T |
52761194 |
aacaatgtctccggcagtgaatgctccggcaccaagcgcaacaaacacccatgctccggtcccaagccctaccagcaccaacgctccggcaccaagcact |
52761095 |
T |
|
| Q |
209 |
-------accatgctccggcaccaagcgcaactaatacccatgctccagcaccaagcaatacca---gcaaccatgctcctgcaccaagcgctaccagca |
298 |
Q |
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| T |
52761094 |
gcaagcaacaatgctccggcaccaagcgcaactaatacccatggtccagcaccaagcgataccaccagcaaccatgctcctgcaccaagcgctaccagca |
52760995 |
T |
|
| Q |
299 |
cccatgctccggcaccaagtgaaaccagcaccgctcatgcttcggcgccaagtgttactaaaacgcatgctccagcaccaagtcctcatcattctggttc |
398 |
Q |
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| T |
52760994 |
cccatgctccggcaccaagtgaaaccagcaccgctcatgcttcggcgccaagtgttactaaaacgcatgctccagcaccaagtcctcatcattctggttc |
52760895 |
T |
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| Q |
399 |
tgcgagattgagtggttatgttggtatcaatgttgtggtggctttggtcttaggaagctttgttttttagaatgttggtagtttacatgcatctaaacat |
498 |
Q |
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| T |
52760894 |
tgcgagattgagtggttatgttggtatcaatgttgtggtggctttggtcttaggaagctttgttttttagaatgttggtagtttacatgcatctaaacat |
52760795 |
T |
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| Q |
499 |
cgttgcttttatttcctgtctttatgttgttgaatttcgtcgtactctagtttag |
553 |
Q |
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| T |
52760794 |
cgttgcttttatttcctgtctttatgttgttgaatttcgtcgtactctagtttag |
52760740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 469
Target Start/End: Original strand, 52796883 - 52796987
Alignment:
| Q |
365 |
atgctccagcaccaagtcctcatcattctggttctgcgagattgagtggttatgttggtatcaatgttgtggtggctttggtcttaggaagctttgtttt |
464 |
Q |
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| T |
52796883 |
atgctccttcaccaagtcctaatcgttcgggttctgcgaggatgagtgggtctgttggggtcagtgttgtggtggcttttgtcttaggaagctttgctat |
52796982 |
T |
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| Q |
465 |
ttaga |
469 |
Q |
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||||| |
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| T |
52796983 |
ttaga |
52796987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 474
Target Start/End: Original strand, 52798774 - 52798882
Alignment:
| Q |
366 |
tgctccagcaccaagtcctcatcattctggttctgcgagattgagtggttatgttggtatcaatgttgtggtggctttggtcttaggaagctttgttttt |
465 |
Q |
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|||||| || || |||||| | ||||| |||||| | || |||||||||| || |||| | | |||||||||||||||||||||||||| ||||| |||| |
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| T |
52798774 |
tgctccggcgcctagtcctaaacattcgggttctaccaggttgagtggttctgatggtgttagtgttgtggtggctttggtcttaggaacctttgctttt |
52798873 |
T |
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| Q |
466 |
tagaatgtt |
474 |
Q |
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| T |
52798874 |
tagaatgtt |
52798882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 38710731 - 38710644
Alignment:
| Q |
387 |
tcattctggttctgcgagattgagtggttatgttggtatcaatgttgtggtggctttggtcttaggaagctttgttttttagaatgtt |
474 |
Q |
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| T |
38710731 |
tcattcgggttctaggaggttgagtggttttgttggtgtgagtgttgtggtggctttggtcttaggaagctttgctttttagaatgtt |
38710644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 42094344 - 42094276
Alignment:
| Q |
406 |
ttgagtggttatgttggtatcaatgttgtggtggctttggtcttaggaagctttgttttttagaatgtt |
474 |
Q |
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| T |
42094344 |
ttgagtggttctgttggtgtcaatgttgtggtggcattggtattaggaagccttgctttttagaatgtt |
42094276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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