View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1553R-Insertion-7 (Length: 530)

Name: NF1553R-Insertion-7
Description: NF1553R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1553R-Insertion-7
NF1553R-Insertion-7
[»] chr2 (2 HSPs)
chr2 (9-530)||(43416325-43416846)
chr2 (124-334)||(43401755-43401966)


Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 9 - 530
Target Start/End: Original strand, 43416325 - 43416846
Alignment:
Q  9 aaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgcaacacctcctcaagtgctacatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43416325 aaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgcaacacctcctcaagtgctacatt 43416424  T
Q  109 cttgaatannnnnnnactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcatgtaaccaaaagaggaaagaaaa 208  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43416425 cttgaatatttttttactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataaccattcatgtaaccaaaagaggaaagaaaa 43416524  T
Q  209 ataagagggaaaactttcaatgattgacataaaatttttgtattgcatctcagtggtcctcgtcatttctttctattgcaatcacagaaacaagtgtagt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43416525 ataagagggaaaactttcaatgattgacataaaatttttgtattgcatctcagtggtcctcgtcatttctttctattgcaatcacagaaacaagtgtagt 43416624  T
Q  309 tggctcctatcataggagaaagaagtgttgcacaagagattctttatgcattctttcctttattcctaattcttatgctgccatactgaagtgacaagac 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43416625 tggctcctatcataggagaaagaagtgttgcacaagagattctttatgcattctttcctttattcctaattcttatgctgccatgctgaagtgacaagac 43416724  T
Q  409 aatagagtattatatctgaagcacagcttaactaaccctctcccacactatgtatcacaaacaccaatcggactaaccatgtctccagagaatcgaattt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43416725 aatagagtattatatctgaagcacagcttaactaaccctctcccacactatgtatcacaaacaccaatcggactaaccatgtctccagagaatcgaactt 43416824  T
Q  509 gagatcttgaggaaaagcgcac 530  Q
    ||||| |||||||| |||||||    
T  43416825 gagatgttgaggaagagcgcac 43416846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 124 - 334
Target Start/End: Original strand, 43401755 - 43401966
Alignment:
Q  124 actctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcatgtaaccaaaagagg--aaagaaaaataagagggaaaa 221  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||  ||| ||| |||||||||||||    
T  43401755 actctataaactatagtaagatatggtgcacatagaataacaaagaggggaataatcaatcatgtaaccaaaagagggaaaaaaaatataagagggaaaa 43401854  T
Q  222 ctttcaatgattgacataaaatttttgtattgcatctcagtggtcctcgtcatttctttctattgcaatcacagaaacaagtgtagttggctcctatcat 321  Q
     |||||||||||||||||| | ||||| | |||||||  ||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||||||    
T  43401855 ttttcaatgattgacataagaattttgcactgcatcttggtggtcctcgtcatttctttcta-tgcaatcacaaaaataagtgtatttggctcctatcat 43401953  T
Q  322 aggagaaagaagt 334  Q
    |||||||||||||    
T  43401954 aggagaaagaagt 43401966  T

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