View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553R-Insertion-8 (Length: 465)
Name: NF1553R-Insertion-8
Description: NF1553R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553R-Insertion-8 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: scaffold0259 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 9 - 446
Target Start/End: Original strand, 2890 - 3327
Alignment:
| Q |
9 |
tattttacataaaagtgaaaccatggttctcgttaactcttgctcaaaggtctacatgcttgacgtggctttgattgaatttaaaatggcaaggttgaga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2890 |
tattttacataaaagtgaaaccatggttctcgttaactcttgctcaaaggtctacatgcttgtcgtggctttgattgaatttaaaatggcaaggttgaga |
2989 |
T |
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| Q |
109 |
tagaataatgaaacgcatggcccaaaacaaatagcaaataaaaatggcgattaaatggacatagaaacatatggcactacaaagatctttgagagagatg |
208 |
Q |
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| T |
2990 |
tagaataatgaaacgcatggcccaaaacaaatagcaaataaaaatggcgattaaatggacatagaaacatatggcactacaaagatctttgagagagatg |
3089 |
T |
|
| Q |
209 |
gttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggttagcaccagaatttaatataaggtgggtttggagagaaaataggata |
308 |
Q |
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| T |
3090 |
gttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggttagcaccagaatttaatataaggtgggtttggagagaaaataggata |
3189 |
T |
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| Q |
309 |
tattagtggtgttagctggtccagtaaagtggtacgtaggattaagaagtgggaggaagttagtttctaatcatgtagaacaagtcatggtactatctag |
408 |
Q |
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| T |
3190 |
tattagtggtgttagctggtccagtaaagtggtacgtaggattaggaagtgggaggaagttagtttctaatcatgtagaacaagtcatggtactatctag |
3289 |
T |
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| Q |
409 |
tctagttcatgtaatccaactacctaaatttcagctca |
446 |
Q |
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| T |
3290 |
tctagttcatgtaatccaactacctaaattttagctca |
3327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 10530508 - 10530777
Alignment:
| Q |
9 |
tattttacataaaagtgaaaccatggttctc--gttaactcttgctcaaaggtctacatgcttgacgtggctttgattgaatttaaaatggcaaggttga |
106 |
Q |
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| T |
10530508 |
tattttacataaaagtgaaaccatggttctctcgttaactcttgctcaaaggtctacatgcttgtcgtagctttgattgaatttaaaatggcaaggttga |
10530607 |
T |
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| Q |
107 |
gatagaataatgaaacgcatggcccaaaacaaatagcaaataaaaatggcgatt--aaatggacatagaaacatatggcactacaaagatctttgagaga |
204 |
Q |
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| T |
10530608 |
gatagaataatgaaacgcatggcccaaaacaaataggaaataaaaatggtgattaaaaatggacatagaaacatatggcactacaaagatctttgagaga |
10530707 |
T |
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| Q |
205 |
g-----------atggttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggtta |
263 |
Q |
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| T |
10530708 |
gatggtgtgtatatggttttgttaagcagaccttatgaattgttttccgtctcttcctaattgtgggtta |
10530777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 9818544 - 9818657
Alignment:
| Q |
48 |
ttgctcaaaggtctacatgcttgacgtggctttgattgaatttaaaatggcaaggttgagatagaataatgaaacgcatggcccaaaacaaatagcaaat |
147 |
Q |
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| T |
9818544 |
ttgctcaaaggtctacatgcttgtcgtggctttgattgaatttaaaatggcaaggttgagatagaataatgaaacgcatggcccaaaacaaataggaaat |
9818643 |
T |
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| Q |
148 |
aaaaatggcgatta |
161 |
Q |
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| T |
9818644 |
aaaaatggtgatta |
9818657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 9818687 - 9818744
Alignment:
| Q |
206 |
atggttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggtta |
263 |
Q |
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| T |
9818687 |
atggttttgttaagcagaccttatgaattgttttaagtctcttcctaattgtgggtta |
9818744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 16108408 - 16108445
Alignment:
| Q |
84 |
tgaatttaaaatggcaaggttgagatagaataatgaaa |
121 |
Q |
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| T |
16108408 |
tgaatttaaaatggcaaggttgaaatagaagaatgaaa |
16108445 |
T |
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