View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1553R-Insertion-9 (Length: 435)
Name: NF1553R-Insertion-9
Description: NF1553R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553R-Insertion-9 |
 | |
|
| [»] chr8 (17 HSPs) |
| |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 6313833 - 6313406
Alignment:
| Q |
8 |
agtgaaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6313833 |
agtgaaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggag |
6313734 |
T |
|
| Q |
108 |
tgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactg |
207 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6313733 |
tgttgtaacaaaaatgaagatgacaaggttgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactg |
6313634 |
T |
|
| Q |
208 |
cgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattc |
307 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6313633 |
cgttgattaaacacaagaaacaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagcagctaatttgtctggttttcattc |
6313534 |
T |
|
| Q |
308 |
caccacatacaggtttttctgtttttgcatacattaaaattaaattttatcggtctacccgtcaaattaatatcaatgttgtaaaaatcagatcggagat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6313533 |
caccacatacaggtttttctgtttttgcatacattaaaattaaattttatcggtctgcccgtcaaattaatatcaatgttgtaaaaatcagatcggagat |
6313434 |
T |
|
| Q |
408 |
cgaaccgacgaaacctctaaatcatggt |
435 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
6313433 |
cgaaccgaagaaacctctaaatcatggt |
6313406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 14403254 - 14403567
Alignment:
| Q |
12 |
aaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagtgtt |
111 |
Q |
| |
|
||||||||||||||||||||| | |||||||| ||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14403254 |
aaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataatggagtgta |
14403353 |
T |
|
| Q |
112 |
gtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgtt |
211 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
14403354 |
gtaacaaaaatgaagatgacaacgttgttgttgttcctgtgttctaccatgttgacccttcacacgtgcggaagcagactgggagttacggcactgcgtt |
14403453 |
T |
|
| Q |
212 |
gactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattccacc |
311 |
Q |
| |
|
| ||||| | | |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14403454 |
ggaaaaacatatggagcaagacaacaatggtgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattctgca |
14403553 |
T |
|
| Q |
312 |
acatacaggttttt |
325 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14403554 |
acatacaggttttt |
14403567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 5568683 - 5569026
Alignment:
| Q |
11 |
gaaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagtgt |
110 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||| |||||||| || |||||||| |||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
5568683 |
gaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacatggtgtttgaatgaacttgttgaactaatggagtgc |
5568782 |
T |
|
| Q |
111 |
tgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgt |
210 |
Q |
| |
|
|||||||||||||||| ||||| || ||| ||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||||| ||| | |
|
|
| T |
5568783 |
cgtaacaaaaatgaagacgacaacattggtgtgattcctgtgttctaccatgttgacccttcacatgtgcggaagcagaccgggagttatggcagtgcat |
5568882 |
T |
|
| Q |
211 |
tgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattccac |
310 |
Q |
| |
|
|| | |||||| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5568883 |
tggcgaaacac---aagcaagagaaccaagatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattcctc |
5568979 |
T |
|
| Q |
311 |
cacatacaggtttttctgtttttgcatacattaaaattaaattttatc |
358 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||| |||||||| |
|
|
| T |
5568980 |
gacatacaggttttt-agtctttgtatacattaaaattatattttatc |
5569026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 5598538 - 5598195
Alignment:
| Q |
12 |
aaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagtgtt |
111 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| |||||||| || |||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
5598538 |
aaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataatggagtgtg |
5598439 |
T |
|
| Q |
112 |
gtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgtt |
211 |
Q |
| |
|
||||||||||||| |||||||| | |||||| ||||| || || ||||||||||||||||||||||||||||| || || || ||| ||| |||| | |
|
|
| T |
5598438 |
gtaacaaaaatgaggatgacaacgttgttgtcattcctgttttttaccatgttgacccttcacacgtgcggaaacaaacagggtattacggcgctgcact |
5598339 |
T |
|
| Q |
212 |
gactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattccacc |
311 |
Q |
| |
|
| | ||||||| | |||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
5598338 |
ggcaaaacacagggagcaaggcaacaatgatgataagatgatacaaaattggaagaatgttctttttcaagcagctaatttgtctggttttcattcaacc |
5598239 |
T |
|
| Q |
312 |
acatacaggtttttctgtttttgcatacattaaaattaaatttt |
355 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||| |
|
|
| T |
5598238 |
acatacaggttttttaatctttgcattaattaaaattagatttt |
5598195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 5636737 - 5637080
Alignment:
| Q |
12 |
aaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagtgtt |
111 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| |||||||| || |||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
5636737 |
aaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataatggagtgtg |
5636836 |
T |
|
| Q |
112 |
gtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgtt |
211 |
Q |
| |
|
||||||||||||| |||||||| | |||||| ||||| || || ||||||||||||||||||||||||||||| || || || ||| ||| |||| | |
|
|
| T |
5636837 |
gtaacaaaaatgaggatgacaacgttgttgtcattcctgttttttaccatgttgacccttcacacgtgcggaaacaaacagggtattacggcgctgcact |
5636936 |
T |
|
| Q |
212 |
gactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattccacc |
311 |
Q |
| |
|
| | ||||||| | |||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
5636937 |
ggcaaaacacagggagcaaggcaacaatgatgataagatgatacaaaattggaagaatgttctttttcaagcagctaatttgtctggttttcattcaacc |
5637036 |
T |
|
| Q |
312 |
acatacaggtttttctgtttttgcatacattaaaattaaatttt |
355 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||| |
|
|
| T |
5637037 |
acatacaggttttttaatctttgcattaattaaaattagatttt |
5637080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 5624543 - 5624855
Alignment:
| Q |
9 |
gtgaaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagt |
108 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||||||||||||| ||||| || || ||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
5624543 |
gtgaaagcaatcaaacaatccactctgtatcttgtggtgttctcggagaactacgcgtcatcaacatggtgtttgaacgaactcgttcaaataatggagt |
5624642 |
T |
|
| Q |
109 |
gttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgc |
208 |
Q |
| |
|
|| ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| |
|
|
| T |
5624643 |
gtaataacaaaaatgaagatgacaatgttgttgttattcctgtgttctaccatgttgacccttcacaagtgcggaaacagaccggaagttatggcactgc |
5624742 |
T |
|
| Q |
209 |
gttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattcc |
308 |
Q |
| |
|
|| ||||||||||| |||||||||| | |||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5624743 |
tctggctaaacacaaggagcaaggcaacgaccatga------gatgcaaaaatggaatactgctctttttcaagctgctaatttgtctggttttcattta |
5624836 |
T |
|
| Q |
309 |
accacatacaggtttttct |
327 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
5624837 |
gccaaaaacaggtttttct |
5624855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 325
Target Start/End: Original strand, 5547522 - 5547838
Alignment:
| Q |
9 |
gtgaaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagt |
108 |
Q |
| |
|
||||| ||||| |||||||||||| | |||||||| ||||||||| | ||||| || |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
5547522 |
gtgaaggcaatgaaacaatccactttgtttcttgtcgtgttctcgaagaactacgcatcttcaacatggtgtttgaacgaactggttgagataatggagt |
5547621 |
T |
|
| Q |
109 |
gttg------taacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatgg |
202 |
Q |
| |
|
| ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
5547622 |
tattcgacattaacaaaaatgaagatgacaacgttgttgttattcctgtgttctaccatgttgacccttcacacgtgaggaagcaaactgggagttatgg |
5547721 |
T |
|
| Q |
203 |
cactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggtttt |
302 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| | |||| ||||||||| ||||| | |||||||| | ||||||||||||||||||||||| |
|
|
| T |
5547722 |
cactgccttggctaaacacaagaagcaaggcaacgaccatga------gatgcaaaaatggaatactgctctttctgaagctgctaatttgtctggtttt |
5547815 |
T |
|
| Q |
303 |
cattccaccacatacaggttttt |
325 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
5547816 |
cattcaaccacatacaggttttt |
5547838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 32632673 - 32632971
Alignment:
| Q |
11 |
gaaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagtgt |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||| | || ||||||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32632673 |
gaaagcaatcaaacaatccactatctttttggtagtgttctcgaagaactatgcgtcttcaacatggtgtttgaacgaactcgttgaaataatggagtgt |
32632772 |
T |
|
| Q |
111 |
tgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgt |
210 |
Q |
| |
|
|||||||| ||||| | || ||||||||| ||||| |||||| ||||||| || | ||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
32632773 |
agtaacaaa---------gacaacgttgctgttattcctgtgttttaccatattgacccctcccgcgtgcggaaacagactggaagttacggcactgcgt |
32632863 |
T |
|
| Q |
211 |
tgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattccac |
310 |
Q |
| |
|
|| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||| || |
|
|
| T |
32632864 |
tggcaaaacacaagaagcaaggc---tgtgatcataagatgatgcaaaattggaagaatgctctttttcaagcagccaatttatccggttttcattctac |
32632960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 13164380 - 13164678
Alignment:
| Q |
11 |
gaaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagtgt |
110 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| |||||||| || ||||| || | |||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
13164380 |
gaaagcaatcaatgaatccactctttttcttgtcgtgttctcagagaactacgcattttcaacatggtgtttgaacgaactagttcaaataatggagtgt |
13164479 |
T |
|
| Q |
111 |
tgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgt |
210 |
Q |
| |
|
| ||||| |||||| |||| || | |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||| | |
|
|
| T |
13164480 |
agcaacaacaatgaaaatgataacgttgttgttattcctgtgttctaccatgttgacccttcacatgttcggaagcagactggcagttacggcactgctt |
13164579 |
T |
|
| Q |
211 |
tgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattccac |
310 |
Q |
| |
|
|| | |||||| | ||| |||||||| ||||||||||||||||||||||||| |||| ||||||| ||||| || ||||| || |
|
|
| T |
13164580 |
tggcaaaacac---------------attgaccataagatgttgcaaaattggaagaatgctcttttcgaagcatctaatttatctggattccattctac |
13164664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 68 - 278
Target Start/End: Original strand, 5572855 - 5573054
Alignment:
| Q |
68 |
ttcaacatggtgtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgac |
167 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||| | ||||| | |||||||||||| || ||||||||||| |
|
|
| T |
5572855 |
ttcaacatggtgtttgaacaaacttgttgaaataatgaaatgtc---acaaaaatgaaaaagacaatgttgttgttattcccgt-----accatgttgac |
5572946 |
T |
|
| Q |
168 |
ccttcacacgtgcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaaga |
267 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| |||||||| ||| | |||||||||||||||||| |||||||||| |||||| |||| |||||||| |
|
|
| T |
5572947 |
ccttcacacgtccggaagcagacggggagttacggcactgctttggcaaaacacaagaagcaaggc---aatgatgatatgatgatacaaatttggaaga |
5573043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 12190532 - 12190344
Alignment:
| Q |
45 |
gtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgtta |
144 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| || || || |||||||| || ||||| | |||||||| |
|
|
| T |
12190532 |
gtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaag---tgcaaaaaaaatgacgaagacaacgttgttgtta |
12190436 |
T |
|
| Q |
145 |
ttccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaa |
236 |
Q |
| |
|
|||| |||||||||| | | || |||||||| || || |||||||| || ||||| ||| |||||| | ||||| ||||| ||||||||| |
|
|
| T |
12190435 |
ttcctgtgttctaccgtatagaaccttcacatgtccgaaagcagacagggagttaccacacggcgttggcgaaacaaaagaaacaaggcaaa |
12190344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 12434960 - 12434772
Alignment:
| Q |
45 |
gtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgtta |
144 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| || || || |||||||| || ||||| | |||||||| |
|
|
| T |
12434960 |
gtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaag---tgcaaaaaaaatgacgaagacaacgttgttgtta |
12434864 |
T |
|
| Q |
145 |
ttccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaa |
236 |
Q |
| |
|
|||| |||||||||| | | || |||||||| || || |||||||| || ||||| ||| |||||| | ||||| ||||| ||||||||| |
|
|
| T |
12434863 |
ttcctgtgttctaccgtatagaaccttcacatgtccgaaagcagacagggagttaccacacggcgttggcgaaacaaaagaaacaaggcaaa |
12434772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 12178870 - 12178649
Alignment:
| Q |
12 |
aaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagtgtt |
111 |
Q |
| |
|
|||||||| ||| |||| || ||||| | || |||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| || | |
|
|
| T |
12178870 |
aaagcaattaaagcatccgctttatttttggttgtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaag---t |
12178774 |
T |
|
| Q |
112 |
gtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgtt |
211 |
Q |
| |
|
| || |||||||| || ||||| | |||||||||||| |||||||||| | | || ||||||| || || |||||||| || ||||| ||| ||||| |
|
|
| T |
12178773 |
gcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaagcttcacatgtccgaaagcagacaggaagttaccacacagcgtt |
12178674 |
T |
|
| Q |
212 |
gactaaacacaagaagcaaggcaaa |
236 |
Q |
| |
|
| ||||| ||||| ||||||||| |
|
|
| T |
12178673 |
gttgaaacaaaagaaacaaggcaaa |
12178649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 12423298 - 12423077
Alignment:
| Q |
12 |
aaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagtgtt |
111 |
Q |
| |
|
|||||||| ||| |||| || ||||| | || |||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| || | |
|
|
| T |
12423298 |
aaagcaattaaagcatccgctttatttttggttgtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaag---t |
12423202 |
T |
|
| Q |
112 |
gtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgtt |
211 |
Q |
| |
|
| || |||||||| || ||||| | |||||||||||| |||||||||| | | || ||||||| || || |||||||| || ||||| ||| ||||| |
|
|
| T |
12423201 |
gcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaagcttcacatgtccgaaagcagacaggaagttaccacacagcgtt |
12423102 |
T |
|
| Q |
212 |
gactaaacacaagaagcaaggcaaa |
236 |
Q |
| |
|
| ||||| ||||| ||||||||| |
|
|
| T |
12423101 |
gttgaaacaaaagaaacaaggcaaa |
12423077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 5562354 - 5562451
Alignment:
| Q |
9 |
gtgaaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatgga |
106 |
Q |
| |
|
||||| ||||| |||||||||||| | |||||||| ||||||||||| ||||| || |||||||||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
5562354 |
gtgaaggcaatgaaacaatccactttgtttcttgtcgtgttctcggagaactacgcgtcttcaacatggtgtttgaatgaactcgttcaaataatgga |
5562451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 5562471 - 5562569
Alignment:
| Q |
138 |
gttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaa |
236 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| | || ||||| || || || ||||| ||||||||| || | |||||||||||| ||| |||| |
|
|
| T |
5562471 |
gttgttaatcctgtgttctaccatgttgacccttctgatgttcggaaacacacagggagttacggcactgcgctggcaaaacacaagaaggaagacaaa |
5562569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 5562606 - 5562656
Alignment:
| Q |
255 |
caaaattggaagaatgctctttttcaagctgctaatttgtctggttttcat |
305 |
Q |
| |
|
||||| |||||||||||||||||| |||| |||||||| ||||| |||||| |
|
|
| T |
5562606 |
caaaaatggaagaatgctctttttgaagcagctaatttatctggatttcat |
5562656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 15599 - 15286
Alignment:
| Q |
12 |
aaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataatggagtgtt |
111 |
Q |
| |
|
||||||||||||||||||||| | |||||||| ||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15599 |
aaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataatggagtgta |
15500 |
T |
|
| Q |
112 |
gtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgtt |
211 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
15499 |
gtaacaaaaatgaagatgacaacgttgttgttgttcctgtgttctaccatgttgacccttcacacgtgcggaagcagactgggagttacggcactgcgtt |
15400 |
T |
|
| Q |
212 |
gactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattccacc |
311 |
Q |
| |
|
| ||||| | | |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15399 |
ggaaaaacatatggagcaagacaacaatggtgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattctgca |
15300 |
T |
|
| Q |
312 |
acatacaggttttt |
325 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15299 |
acatacaggttttt |
15286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 19495980 - 19495905
Alignment:
| Q |
137 |
tgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgttg |
212 |
Q |
| |
|
||||||| |||| |||||||||| | |||| |||||| | || |||||||||||||| ||||||||| |||||||| |
|
|
| T |
19495980 |
tgttgttcttcctgtgttctaccgtattgaaccttcatatgttcggaagcagactgggagttatggcgctgcgttg |
19495905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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