View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1553_high_11 (Length: 284)

Name: NF1553_high_11
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1553_high_11
NF1553_high_11
[»] chr2 (1 HSPs)
chr2 (9-284)||(42823708-42823993)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 42823708 - 42823993
Alignment:
Q  9 acatcatcatcatttgattcatcatttcagcttaaaatgaaacgaagattgttttgtttcattttagctctgcagttactaagttctgtctctgtggcta 108  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42823708 acatcatcatcatttgattcatcatttcagcttaaaatgaaaggaagattgttttgtttcattttagctctgcagttactaagttctgtctctgtggcta 42823807  T
Q  109 aaagggcttttccttcaactgatgcaatgtcacatccaggtaat----------tagcacaccatttttatagatatagaccttaatttaatcattggta 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||| ||||||||||||||||| |||    
T  42823808 aaagggcttttccttcaactgatgcaatgtcacatccaggtaattagttaaccatagcacaccatttttatagatatataccttaatttaatcattagta 42823907  T
Q  199 tttttaagtactaacaactgatatatgcttcatttgtattttgtatatatgatgattaggcccagcagagacaccagcaccacacc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  42823908 tttttaagtactaacaactgatatatgcttcatttgtattttgtatatatgatgattaggcccaggagaggcaccagcaccacacc 42823993  T

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