View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_high_13 (Length: 270)
Name: NF1553_high_13
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 45285505 - 45285236
Alignment:
| Q |
1 |
ctttaccattctcagctaactcagctctgctgatagcctgttcggcacgagtcctcatctctgaaatcttcaatgatgcattttcaagctcctttttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45285505 |
ctttaccattctcagctaactcagctctgctgatagcctgttcggcacgagtcctcatctctgaaatcttcaatgatgcattttcaagctcctttttcat |
45285406 |
T |
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| Q |
101 |
caatgctaactctatctggtttccttttttatttcctttctggacttctttaatcatgtagttgtaatcttccaaagagattgtgatactgtcattgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45285405 |
caatgctaactctatctggtttccttttttatttcctttctggacttctttaatcatgtagttgtaatcttccaaagagattgtgatactgtcattgttt |
45285306 |
T |
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| Q |
201 |
tcttcagcttcaccctttgagtgatcagtgatatatccatccttataagccaacctatattcttggagat |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45285305 |
tcttcagcttcaccctttgagtgatcagtgatatatccatccttataagccaacctatattcttgaagat |
45285236 |
T |
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