View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_high_16 (Length: 261)
Name: NF1553_high_16
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 44633417 - 44633161
Alignment:
| Q |
1 |
ccataacaccataagtagtcttcttcttcttccataggtcttcccgtaacaccataacaccatcaaatgaaaatttgttttcagttcctcttgaacaaat |
100 |
Q |
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| T |
44633417 |
ccataacaccataagtagtcttcttcttcttccataggtcttctcgtaacaccataacaccatcaaatgaaaattcgttttcagttcctcttgaacaaat |
44633318 |
T |
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| Q |
101 |
gaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaactgcaaatcgcaaatcatcttcgagtttttcgtgttcttgttcttattcatgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44633317 |
gaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaactgcaaattgcaaatcatcttcaagtttttcgtgttcttgttcttattcatgtg |
44633218 |
T |
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| Q |
201 |
ttcctcttttgattgggtgctgaaacgtgttccaattctccttcatctgtgctcctc |
257 |
Q |
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| T |
44633217 |
ttcctcttttgattgggtgctgaaacgtgttccaattctccttcatctgtgttcctc |
44633161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 21612363 - 21612132
Alignment:
| Q |
19 |
tcttcttcttcttccataggtcttcccgtaacaccataacaccatcaaatgaaaatttgttttcagttcctcttgaacaaatgaaaatcggaaatcatgc |
118 |
Q |
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| T |
21612363 |
tcttcttcttcttccataggtcttctc--------ataacaccatcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgc |
21612272 |
T |
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| Q |
119 |
tcaaaatcgttgatttgcgttgttgaaactgcaaatcgcaaatcatcttcgagtttttcgtgttcttgttcttattcatgtgttcctcttttgattgggt |
218 |
Q |
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| T |
21612271 |
ttaaaatctttgatttgcgttgttgaaactgcaaatcggaaatcatcttcaagtttttcatgttctagttcttattcatgtgttcctcttttgattgggt |
21612172 |
T |
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| Q |
219 |
gctgaaa-cgtgttccaattctccttcatctgtgctcctc |
257 |
Q |
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|| ||| |||||||||||||||||||||||||| ||||| |
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| T |
21612171 |
acttaaatcgtgttccaattctccttcatctgtgttcctc |
21612132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 5659835 - 5659588
Alignment:
| Q |
1 |
ccataacaccataagtagtcttcttcttcttccataggtcttcccgtaacaccataacaccatcaaatgaaaatttgttttcagttcctcttgaacaaat |
100 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||||| ||||||| ||||||| |||||||| ||||||| |
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| T |
5659835 |
ccataacaccataagtcgtcgtcttcttcttccataggtcttctc--------ataacaccatcaaacgaaaattcgttttcaattcctcttaaacaaat |
5659744 |
T |
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| Q |
101 |
gaaaatcggaaatcatgctcaaaatcgttgatt----tgcgttgttgaaactgcaaatcgcaaatcatcttcgagtttttcgtgttcttgttcttattca |
196 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||| ||||||| ||||||| ||||||| ||| |
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| T |
5659743 |
gaaaatcggaaatcatgctcaaaatcgttgatttgcatgcgttgttg-------aaattgcaaataatcttcaagttttttgtgttctagttcttactca |
5659651 |
T |
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| Q |
197 |
tgtgttcctcttttgatt-gggtgctgaaa-cgtgttccaattctccttcatctgtgctcctc |
257 |
Q |
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|||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||| ||||| |
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| T |
5659650 |
tgtgttcctcttttgattggggtactgaaatcgtgttccaattctccttcatatgtgttcctc |
5659588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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