View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_high_20 (Length: 240)
Name: NF1553_high_20
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 46339271 - 46339055
Alignment:
| Q |
7 |
tgtgttataatgtgataaacgatgagnnnnnnnnnnngaaaggtggtaaacgatgagatataaatcaatatatgtatataattaaatttagtaaaagaca |
106 |
Q |
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| T |
46339271 |
tgtgttataatgtgataaacgatgagtttttttttttgaaaggtggtaaacgatgagatataaatcaatatatgtatataattaaatttagtaaaagaca |
46339172 |
T |
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| Q |
107 |
atggcacatgatggccttatagtttggtcctcctcttagaaaaataaaaggcacatgatccacgtaaagatataaaaatgaagtattagtaaaacttata |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46339171 |
atggcacatgatggccttatagtttggtcctcctcttagaaaaataaaaggcacatgatccacgtaaagatataaaaatgaagtattagtaaaacttata |
46339072 |
T |
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| Q |
207 |
taaaaaatactagtaat |
223 |
Q |
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||||||||||||||||| |
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| T |
46339071 |
taaaaaatactagtaat |
46339055 |
T |
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