View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_high_22 (Length: 234)
Name: NF1553_high_22
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 32338562 - 32338627
Alignment:
| Q |
13 |
cagttttgagatctaggacgagtaatagtaatagttgtgacataaattaaattgactatctataagtacaa |
83 |
Q |
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| T |
32338562 |
cagttttgagatctaggacgagtaatagtaatagttgtgaca-----taaattgactatctataagtacaa |
32338627 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 32338693 - 32338790
Alignment:
| Q |
149 |
tataggatcaagaaagactttatagccatatatata------------ttgttgttttatgctattatcatctatgttgtaggtttgtttgtatattc |
234 |
Q |
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| T |
32338693 |
tataggatcaagaaagactttatagccatatttatagatatatgtattttgttgttttatgctattatcatctatgttggaggtttgtttgtatattc |
32338790 |
T |
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