View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_high_24 (Length: 214)
Name: NF1553_high_24
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 40818059 - 40818216
Alignment:
| Q |
15 |
aatatttgccaccctttttcctttatgcataaaaatttacaactcctaagcaacccatttttcctttgccacccttgtcttgattaattaagccacttca |
114 |
Q |
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||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40818059 |
aatatttgctaccctttttcctttatgcataaca-tttacaactcctaagcaacccatttttcctttgccacccttgtcttgattaattaagccacttca |
40818157 |
T |
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| Q |
115 |
acaaaatctatataaccccactttgacatctcacattcctccaaattccaatggctagg |
173 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40818158 |
acaaaatctatataaccccactttaacatctcacattcctccaaattccaatggctagg |
40818216 |
T |
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