View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_low_10 (Length: 298)
Name: NF1553_low_10
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 1717231 - 1716942
Alignment:
| Q |
6 |
aatagttaactttattgataattttattagagatcatgttatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctg |
105 |
Q |
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| T |
1717231 |
aatagttaactttattgataattttattagagatcatattatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctg |
1717132 |
T |
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| Q |
106 |
aatggagtatagaaggggcgcctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggc |
205 |
Q |
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| T |
1717131 |
aatggagtatacaaggggcacctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggc |
1717032 |
T |
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| Q |
206 |
ctacaaatgtcaatataaccattggagtctcaagtggttgatcgagaatggttacataaagctctagatgc-aaggggttcatctctctc |
294 |
Q |
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| T |
1717031 |
ctacaaatgtcaatataaccattggagtctcaagtggttgatcgagaatggttacataaagctctagatgcaaaggggttcttctttctc |
1716942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 45 - 285
Target Start/End: Complemental strand, 1738598 - 1738358
Alignment:
| Q |
45 |
tatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatagaaggggcgcctatgcaagactaccaaa |
144 |
Q |
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| T |
1738598 |
tatatattgaggatatctaaatgattttacttttctattttggtaggggaatggacggctgaatggagcatacaaggtgcgtctatgcaagactaccaaa |
1738499 |
T |
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| Q |
145 |
gatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggtt |
244 |
Q |
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| T |
1738498 |
gatatgtccaaacacaaatggatgtatattctcgtgcaacatttggatgggctttttggtcctataaatgtcagaataacaaatggagtctcaagtggtt |
1738399 |
T |
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| Q |
245 |
gatcgagaatggttacataaagctctagatgcaaggggttc |
285 |
Q |
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| T |
1738398 |
gatcgaaaatggttacataaagctctagatgtaaggggttc |
1738358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 127 - 284
Target Start/End: Complemental strand, 1753662 - 1753505
Alignment:
| Q |
127 |
ctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataacca |
226 |
Q |
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| T |
1753662 |
ctatgcaagactaccaaagatatggccaagcacaactagatgtgtattctcgtgcaacatttggatgggcttattgggcatacaaatgtcaatataacca |
1753563 |
T |
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| Q |
227 |
ttggagtctcaagtggttgatcgagaatggttacataaagctctagatgcaaggggtt |
284 |
Q |
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| T |
1753562 |
ttggagtctcaagtggatgatcgagaatggttacataaagctctagatgtaaggggtt |
1753505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 268
Target Start/End: Complemental strand, 1748381 - 1748265
Alignment:
| Q |
152 |
ccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgag |
251 |
Q |
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| T |
1748381 |
ccaagcccaattggatgtgtattctcgggcaacatttggatgggcttattggtcctacaaatgtcagtttaatcgttggagccttaagtggatgatcgag |
1748282 |
T |
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| Q |
252 |
aatggttacataaagct |
268 |
Q |
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| T |
1748281 |
aatggttacataaagct |
1748265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 38087047 - 38086985
Alignment:
| Q |
183 |
acatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttg |
245 |
Q |
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| T |
38087047 |
acatttggatgggcatattgggcttacaaatgtgactctaacaactggagtcttaagtggttg |
38086985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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