View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1553_low_12 (Length: 278)

Name: NF1553_low_12
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1553_low_12
NF1553_low_12
[»] chr1 (7 HSPs)
chr1 (15-142)||(27494378-27494505)
chr1 (138-258)||(9316496-9316618)
chr1 (138-258)||(47294555-47294677)
chr1 (161-258)||(43102630-43102727)
chr1 (187-258)||(21815353-21815424)
chr1 (27-142)||(26809776-26809891)
chr1 (138-191)||(21818092-21818147)
[»] chr7 (7 HSPs)
chr7 (138-258)||(28442986-28443106)
chr7 (138-258)||(41543000-41543120)
chr7 (138-257)||(37522336-37522457)
chr7 (138-257)||(41454478-41454599)
chr7 (138-258)||(9702274-9702396)
chr7 (138-258)||(43364783-43364905)
chr7 (138-258)||(48455920-48456039)
[»] chr6 (10 HSPs)
chr6 (138-258)||(10800138-10800258)
chr6 (138-258)||(10806849-10806969)
chr6 (138-258)||(24908961-24909081)
chr6 (138-258)||(7826528-7826649)
chr6 (138-257)||(14118125-14118244)
chr6 (138-257)||(14122083-14122202)
chr6 (138-258)||(18766222-18766344)
chr6 (138-228)||(14115931-14116021)
chr6 (138-258)||(1051755-1051877)
chr6 (163-258)||(13105654-13105749)
[»] chr3 (6 HSPs)
chr3 (138-258)||(4675466-4675586)
chr3 (138-258)||(18867317-18867437)
chr3 (138-258)||(4501652-4501774)
chr3 (138-258)||(4506977-4507099)
chr3 (138-258)||(27901063-27901188)
chr3 (172-259)||(546452-546538)
[»] chr2 (5 HSPs)
chr2 (138-258)||(44611783-44611903)
chr2 (138-258)||(33034290-33034410)
chr2 (138-258)||(43670308-43670430)
chr2 (163-258)||(22600451-22600546)
chr2 (180-261)||(28392744-28392827)
[»] scaffold0045 (2 HSPs)
scaffold0045 (138-257)||(2307-2426)
scaffold0045 (138-257)||(8689-8808)
[»] chr5 (4 HSPs)
chr5 (144-258)||(40820901-40821015)
chr5 (138-258)||(9334715-9334835)
chr5 (140-258)||(4693784-4693902)
chr5 (138-191)||(20899936-20899991)
[»] chr4 (6 HSPs)
chr4 (141-258)||(42852887-42853006)
chr4 (138-255)||(54301168-54301287)
chr4 (138-258)||(13568513-13568635)
chr4 (138-258)||(667233-667355)
chr4 (138-258)||(40976201-40976323)
chr4 (144-259)||(23543115-23543232)
[»] chr8 (6 HSPs)
chr8 (138-258)||(44245472-44245594)
chr8 (138-258)||(2267916-2268038)
chr8 (138-258)||(5063570-5063690)
chr8 (174-258)||(9906510-9906594)
chr8 (175-258)||(38657779-38657863)
chr8 (138-223)||(27666644-27666731)
[»] scaffold1487 (1 HSPs)
scaffold1487 (138-232)||(1652-1748)
[»] scaffold0265 (2 HSPs)
scaffold0265 (187-258)||(17385-17456)
scaffold0265 (138-191)||(14662-14717)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 27494378 - 27494505
Alignment:
Q  15 aaacatgagttgcatatagcttctcccataaagtgtgtcccattgcaagaaaggatgatgaaacatctttggtctggtagattctgtgggagatcccttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  27494378 aaacatgagttgcatatagcttctcccataaagtgtgtcccattgcaagaaaggatgatgaaacatctttggtctggtagattttgtgggagatcccttc 27494477  T
Q  115 gaatcgccacatgttgtcgtttgttgag 142  Q
    ||||||||||||||||||||||||||||    
T  27494478 gaatcgccacatgttgtcgtttgttgag 27494505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 9316618 - 9316496
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||  |||| ||||||||||||||||||| |||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  9316618 ttgagacatcatggcttgcttccattccatctcttcttttctccttataaggttaccatgacaatgagtagctagactctttttgttgggattaaatgta 9316519  T
Q  236 atcaactctattagtatgtattc 258  Q
    |||||||||||||||||||||||    
T  9316518 atcaactctattagtatgtattc 9316496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 47294677 - 47294555
Alignment:
Q  138 ttgagacatcatggcttgctc--atttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||   ||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  47294677 ttgagacatcatggcttgcttctattccatctcttcttttctccctgtaaggttaccatgacaatgagtagctaaactctttttgttgggattaaatgta 47294578  T
Q  236 atcaactctattagtatgtattc 258  Q
     | |||| |||||||||||||||    
T  47294577 gttaactttattagtatgtattc 47294555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 43102727 - 43102630
Alignment:
Q  161 ttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatcaactctattagtatgtattc 258  Q
    |||||||||| | ||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  43102727 ttcatctcttttcttctccttgtaaggttaccatgacaatgagtagataaactctttttgttgggattaaatgtaatctactctattagtatgcattc 43102630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 21815424 - 21815353
Alignment:
Q  187 gttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatcaactctattagtatgtattc 258  Q
    |||||||||||||||  || ||| ||||||||||||||||||||||||||||||||| |||||| |||||||    
T  21815424 gttaccatgacaatgagtatctagactctttttgttgggattaaatgtaatcaactcaattagtttgtattc 21815353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 26809776 - 26809891
Alignment:
Q  27 catatagcttctcccataaagtgtgtcccattgcaagaaaggatgatgaaacatctttggtctggtagattctgtgggagatccctttgaatcgccacat 126  Q
    |||||||||||||||||||||| ||||||||||||| || ||||| |||||||| || |||||||||  || | ||||||||  ||| | ||||||| ||    
T  26809776 catatagcttctcccataaagtatgtcccattgcaacaagggatgttgaaacattttgggtctggtaacttttatgggagatatcttcggatcgccatat 26809875  T
Q  127 gttgtcgtttgttgag 142  Q
    ||||| |||| |||||    
T  26809876 gttgttgtttcttgag 26809891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 21818147 - 21818092
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttac 191  Q
    ||||||| ||||||||||||  |||| |||||||||||||||||||||||||||||    
T  21818147 ttgagacgtcatggcttgcttccattccatctcttcttttctccttgtaaggttac 21818092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 28443106 - 28442986
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  28443106 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattagatgtaat 28443007  T
Q  238 caactctattagtatgtattc 258  Q
    |||||||||||||||||||||    
T  28443006 caactctattagtatgtattc 28442986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 41543120 - 41543000
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  41543120 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaat 41543021  T
Q  238 caactctattagtatgtattc 258  Q
    |||||||||||||||||||||    
T  41543020 caactctattagtatgtattc 41543000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 37522457 - 37522336
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37522457 ttgagacatcatggcttgcttccattccatctcttattttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattaaatgta 37522358  T
Q  236 atcaactctattagtatgtatt 257  Q
     | |||||||||||||||||||    
T  37522357 gttaactctattagtatgtatt 37522336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 41454478 - 41454599
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  41454478 ttgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttaccatgacaatgagtagctaaactctttttgttgggattaaatgta 41454577  T
Q  236 atcaactctattagtatgtatt 257  Q
     | |||||||||||||||||||    
T  41454578 gttaactctattagtatgtatt 41454599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 9702396 - 9702274
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  9702396 ttgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttaccatgacaatgagtagctagactctttttgttgggattaaatgta 9702297  T
Q  236 atcaactctattagtatgtattc 258  Q
    || ||||||||| ||||||||||    
T  9702296 attaactctattggtatgtattc 9702274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 43364905 - 43364783
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||||||||||||    
T  43364905 ttgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttaccataacaatgagtagctagactttttttgttgggattaaatgta 43364806  T
Q  236 atcaactctattagtatgtattc 258  Q
    |||||||||||||||||||||||    
T  43364805 atcaactctattagtatgtattc 43364783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 48456039 - 48455920
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    |||||||||||||||||| | ||| | | |||  | ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |    
T  48456039 ttgagacatcatggcttggttattccttttctcttcttctccttgtaaggttaccatgacaatgtgtagctaaactcttttt-ttgggattaaatgtagt 48455941  T
Q  238 caactctattagtatgtattc 258  Q
     ||||||||||||||||||||    
T  48455940 taactctattagtatgtattc 48455920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 10800138 - 10800258
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  10800138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaat 10800237  T
Q  238 caactctattagtatgtattc 258  Q
    |||||||||||||||||||||    
T  10800238 caactctattagtatgtattc 10800258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 10806849 - 10806969
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  10806849 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaat 10806948  T
Q  238 caactctattagtatgtattc 258  Q
    |||||||||||||||||||||    
T  10806949 caactctattagtatgtattc 10806969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 24909081 - 24908961
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  24909081 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaat 24908982  T
Q  238 caactctattagtatgtattc 258  Q
    |||||||||||||||||||||    
T  24908981 caactctattagtatgtattc 24908961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 7826649 - 7826528
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactct-ttttgttgggattaaatgtaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  7826649 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactcttttttgttgggattgaatgtaa 7826550  T
Q  237 tcaactctattagtatgtattc 258  Q
    ||||||||||||||||||||||    
T  7826549 tcaactctattagtatgtattc 7826528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 14118125 - 14118244
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||||||    
T  14118125 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactatttttgtcgggattgaatgtaat 14118224  T
Q  238 caactctattagtatgtatt 257  Q
    ||||||||||||||||||||    
T  14118225 caactctattagtatgtatt 14118244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 14122083 - 14122202
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||||||    
T  14122083 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactatttttgtcgggattgaatgtaat 14122182  T
Q  238 caactctattagtatgtatt 257  Q
    ||||||||||||||||||||    
T  14122183 caactctattagtatgtatt 14122202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 18766344 - 18766222
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    |||||||||||||| |||||  |||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  18766344 ttgagacatcatggtttgcttccattccatctcttcttttctccttgtaaggttaccatgacaatgagtagctagactctttttgttgggattaaatgta 18766245  T
Q  236 atcaactctattagtatgtattc 258  Q
    |||||||||||||||||||||||    
T  18766244 atcaactctattagtatgtattc 18766222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 14115931 - 14116021
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggatt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14115931 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggatt 14116021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 1051877 - 1051755
Alignment:
Q  138 ttgagacatcatggcttgctc--atttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  1051877 ttgagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatgacaatgagtagttaaactctttttgttgggattaaatgta 1051778  T
Q  236 atcaactctattagtatgtattc 258  Q
     | |||||||||| |||||||||    
T  1051777 gttaactctattaatatgtattc 1051755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 13105749 - 13105654
Alignment:
Q  163 catctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatcaactctattagtatgtattc 258  Q
    |||||||| | |||||||||||||||| |||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||| || ||| |||||    
T  13105749 catctcttatcttctccttgtaaggtttccatgagaatgaataactaaactctttttattgggattaaatgtaatcaactctactaatatatattc 13105654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 4675586 - 4675466
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  4675586 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaat 4675487  T
Q  238 caactctattagtatgtattc 258  Q
    |||||||||||||||||||||    
T  4675486 caactctattagtatgtattc 4675466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 18867437 - 18867317
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  18867437 ttgagacatcatggcttgctcatttcatctattcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgagattaaatgtaat 18867338  T
Q  238 caactctattagtatgtattc 258  Q
    ||||||||||| |||||||||    
T  18867337 caactctattaatatgtattc 18867317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 4501774 - 4501652
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  4501774 ttgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttaccatgacaatgagtagctaaactctttttgttgggattaaatgta 4501675  T
Q  236 atcaactctattagtatgtattc 258  Q
     | ||||||||||||||||||||    
T  4501674 gttaactctattagtatgtattc 4501652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 4507099 - 4506977
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  4507099 ttgagacataatggcttgcttccattccatctcttcttttctccttgtaaggttaccatgacaatgagtagctaaactctttttgttgggattaaatgta 4507000  T
Q  236 atcaactctattagtatgtattc 258  Q
     | ||||||||||||||||||||    
T  4506999 gttaactctattagtatgtattc 4506977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 27901188 - 27901063
Alignment:
Q  138 ttgagacatcatggcttgct--catttcat---ctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaat 232  Q
    ||||||||||||||||||||  |||| |||   ||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  27901188 ttgagacatcatggcttgcttccattccatgatctcttcttttctccttgtaaggttaccatgacaatgagtagctagactctttttgttgggattaaat 27901089  T
Q  233 gtaatcaactctattagtatgtattc 258  Q
    |||||||||||| |||||||||||||    
T  27901088 gtaatcaactcttttagtatgtattc 27901063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 546538 - 546452
Alignment:
Q  172 ttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatcaactctattagtatgtattct 259  Q
    ||||||||||||||||||||||||| ||||  ||||||||| | ||||||||||||||||||||||  |||||| || ||||||||||    
T  546538 ttttctccttgtaaggttaccatgaaaatgagtagctaaacac-ttttgttgggattaaatgtaatatactctactaatatgtattct 546452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 44611903 - 44611783
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  44611903 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaat 44611804  T
Q  238 caactctattagtatgtattc 258  Q
    |||||||||||||||||||||    
T  44611803 caactctattagtatgtattc 44611783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 33034410 - 33034290
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||    
T  33034410 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgagattgaatgtaat 33034311  T
Q  238 caactctattagtatgtattc 258  Q
    ||||||||||| |||||||||    
T  33034310 caactctattaatatgtattc 33034290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 43670430 - 43670308
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||| ||||||  |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  43670430 ttgagacatcatgacttgctttcattccatctcttcttttctccttgtaaggttaccatgacaatgagtagctaaactctttttgttgggattaaatgta 43670331  T
Q  236 atcaactctattagtatgtattc 258  Q
     | ||||||||||||||||||||    
T  43670330 gttaactctattagtatgtattc 43670308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 22600546 - 22600451
Alignment:
Q  163 catctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatcaactctattagtatgtattc 258  Q
    |||||||| | || |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22600546 catctcttttcttttccttgtaaggttaccatgacaatgagtagctaaactctttttgttgggattaaatgtaatcaactctactagtatgtattc 22600451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 28392827 - 28392744
Alignment:
Q  180 ttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatcaactctat--tagtatgtattcttt 261  Q
    ||||||||||||||||| ||||  || |||||||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  28392827 ttgtaaggttaccatgaaaatgcgtaactaaactctttttgttgggattaaatgtaatcaactatatactagtatgtattcttt 28392744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 2307 - 2426
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  2307 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgagattaaatctaat 2406  T
Q  238 caactctattagtatgtatt 257  Q
    ||||||||||||||||||||    
T  2407 caactctattagtatgtatt 2426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 8689 - 8808
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  8689 ttgagacatcatggcttgctcatttcatttcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgagattaaatctaat 8788  T
Q  238 caactctattagtatgtatt 257  Q
    ||||||||||||||||||||    
T  8789 caactctattagtatgtatt 8808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 40820901 - 40821015
Alignment:
Q  144 catcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatcaactc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  40820901 catcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattgaatgtaatcaactc 40821000  T
Q  244 tattagtatgtattc 258  Q
    |||||||||||||||    
T  40821001 tattagtatgtattc 40821015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 9334715 - 9334835
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| |    
T  9334715 ttgagacatcatggcttgcacatttcatctcttcttttctccttgtaaggttaccatgaaaatgagtagctaaactctttttgttgggattaaatgtagt 9334814  T
Q  238 caactctattagtatgtattc 258  Q
     ||||||||||||||||||||    
T  9334815 taactctattagtatgtattc 9334835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 258
Target Start/End: Original strand, 4693784 - 4693902
Alignment:
Q  140 gagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatca 239  Q
    |||||||||||||||| | ||| | | |||  | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |    
T  4693784 gagacatcatggcttggttattccttttctcatattctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattaaatgtagtta 4693883  T
Q  240 actctattagtatgtattc 258  Q
    |||||||||||||||||||    
T  4693884 actctattagtatgtattc 4693902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 20899991 - 20899936
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttac 191  Q
    |||||||||||||||| |||  |||| ||||||||| |||||||||||||||||||    
T  20899991 ttgagacatcatggctggcttccattccatctcttcctttctccttgtaaggttac 20899936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 42852887 - 42853006
Alignment:
Q  141 agacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatc 238  Q
    |||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42852887 agacatcatggcttgcttccattccatctcttcttttctccttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattaaatgtaatc 42852986  T
Q  239 aactctattagtatgtattc 258  Q
    ||||||||||||||||||||    
T  42852987 aactctattagtatgtattc 42853006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 138 - 255
Target Start/End: Original strand, 54301168 - 54301287
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  54301168 ttgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttaccatgacaatgagtagctagactctttttgttgggattaaatgta 54301267  T
Q  236 atcaactctattagtatgta 255  Q
    ||||||||||||||||||||    
T  54301268 atcaactctattagtatgta 54301287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 13568635 - 13568513
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  13568635 ttgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttaccatgacaatgagtagctagactctttttgttgggattaaatgta 13568536  T
Q  236 atcaactctattagtatgtattc 258  Q
    || ||||||||| ||||||||||    
T  13568535 attaactctattggtatgtattc 13568513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 667233 - 667355
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||  |||| ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||    
T  667233 ttgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttacaatgacaatgagtagctaaactctttttgttgtgattaaatgta 667332  T
Q  236 atcaactctattagtatgtattc 258  Q
     | ||||||||||||||||||||    
T  667333 gttaactctattagtatgtattc 667355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 40976201 - 40976323
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||  |||| |||||||||||||||| ||||||||||||||||||||||  ||| || |||||||||||||||||||||||||    
T  40976201 ttgagacatcatggcttgcttccattccatctcttcttttctctttgtaaggttaccatgacaatgagtagttagactctttttgttgggattaaatgta 40976300  T
Q  236 atcaactctattagtatgtattc 258  Q
    || ||||||||||| ||||||||    
T  40976301 attaactctattagcatgtattc 40976323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 23543115 - 23543232
Alignment:
Q  144 catcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatcaac 241  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||| |||||||    
T  23543115 catcatggcttgcttccattccatctcttcttttctccttgtaaggttaccatgacaataagtagctagactctttttgttgggattaaatgcaatcaac 23543214  T
Q  242 tctattagtatgtattct 259  Q
      ||||||||||||||||    
T  23543215 aatattagtatgtattct 23543232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 44245472 - 44245594
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||| ||||||  |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  44245472 ttgagacatcatgccttgcttccattccatctcttcttttctccttgtaaggttaccatgacaatgagtagctaaactctttttgttgggattaaatgta 44245571  T
Q  236 atcaactctattagtatgtattc 258  Q
     | ||||||||||||||||||||    
T  44245572 gttaactctattagtatgtattc 44245594  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 2267916 - 2268038
Alignment:
Q  138 ttgagacatcatggcttgctc--atttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgta 235  Q
    ||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  2267916 ttgagacatcatggcttgcttctattccatctcttcttttctccttgtaaggttaccatgacaatgagtagctaaactctttttgttgggattaaatgta 2268015  T
Q  236 atcaactctattagtatgtattc 258  Q
     | ||||||||||||||| ||||    
T  2268016 gttaactctattagtatgcattc 2268038  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 5063570 - 5063690
Alignment:
Q  138 ttgagacatcatggcttgctcatttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaat 237  Q
    |||||||||||||||||| | ||| | | |||  |  ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  5063570 ttgagacatcatggcttggttattccttttctcttcgtcttcttgtaaggttaccatgacaatgtgtagctaaactctttttgttgggattaaatgtagt 5063669  T
Q  238 caactctattagtatgtattc 258  Q
     ||||||||||||||||||||    
T  5063670 taactctattagtatgtattc 5063690  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 9906510 - 9906594
Alignment:
Q  174 ttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatcaactctattagtatgtattc 258  Q
    ||||||||||||||||||||||||||||  ||  || ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  9906510 ttctccttgtaaggttaccatgacaatgagtatgtagactctttttgttgggattaaatgtaattaactctactagtatgtattc 9906594  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 38657863 - 38657779
Alignment:
Q  175 tctccttgtaaggttaccatgacaatgtatagctaaactctttttgtt-gggattaaatgtaatcaactctattagtatgtattc 258  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||    
T  38657863 tctccttgtaaggttaccatgacaatgagtagctaaactctttttgttggggattaaatgcagttaactctattagtatgtattc 38657779  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 27666644 - 27666731
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttg 223  Q
    ||||||||||| ||||||||  |||||||||| ||||||||||||||||| |||||||||||||||  | |||| |||||||||||||    
T  27666644 ttgagacatcaaggcttgcttccatttcatcttttcttttctccttgtaatgttaccatgacaatgagttgctatactctttttgttg 27666731  T

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Target: scaffold1487 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 1652 - 1748
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttaccatgacaatgtatagctaaactctttttgttgggattaaat 232  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||| ||||||||||    
T  1652 ttgagacatcatggcttgcttccattccatctcttcttttctccttgtaaggttaccatgacaatgagtagctagactctttttgtcgggattaaat 1748  T

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Target: scaffold0265 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 17385 - 17456
Alignment:
Q  187 gttaccatgacaatgtatagctaaactctttttgttgggattaaatgtaatcaactctattagtatgtattc 258  Q
    |||||||||||||||  || ||| ||||||||||||||||||||||||||||||||| |||||| |||||||    
T  17385 gttaccatgacaatgagtatctagactctttttgttgggattaaatgtaatcaactcaattagtttgtattc 17456  T

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Target: scaffold0265; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 14662 - 14717
Alignment:
Q  138 ttgagacatcatggcttgct--catttcatctcttcttttctccttgtaaggttac 191  Q
    ||||||| ||||||||||||  |||| |||||||||||||||||||||||||||||    
T  14662 ttgagacgtcatggcttgcttccattccatctcttcttttctccttgtaaggttac 14717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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