View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_low_17 (Length: 261)
Name: NF1553_low_17
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 43955260 - 43955031
Alignment:
| Q |
18 |
ccttaaaagaataaaatcaatcccaatatgagtaatggatctggaaatcaatatcttattgcttgaagtcttgaacattaaaccatatatatat--tcaa |
115 |
Q |
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| T |
43955260 |
ccttaaaagaataaaatcaatcccaatatgagtaatggatctggaaatcaatatcttattgcttgaagtcttgaacattaaaccatatatatatattcaa |
43955161 |
T |
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| Q |
116 |
cccacacaaaacttacgtgactgagtgttgttacatagagagctgctaatttcttttggggaactataaaatgtaacctatttgaatttgtgtttttctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43955160 |
cccacacaaaacttacgtgactgagtgttgttacatagagagctgctaatttcttttggggaactataaaatgtaacctatttgaatttgtgtttttctt |
43955061 |
T |
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| Q |
216 |
ggcaataaatcttccttttctgattcacag |
245 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43955060 |
ggcaataaatcttccttttctgattcacag |
43955031 |
T |
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