View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_low_20 (Length: 254)
Name: NF1553_low_20
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 36971615 - 36971844
Alignment:
| Q |
10 |
ataattctattcaacttcggtatgcacttttcttcctaactttcttttacatgattttcaactagaagcaaaacattcaagggagctcctttgtcaaata |
109 |
Q |
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| T |
36971615 |
ataattctattcaacttcagtatgcacttttcttcctaactttcttttacatgattttcaaatagaagcaaaacattcaagggagctcctttgtcaaata |
36971714 |
T |
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| Q |
110 |
atatttatgtttttgttctgtacactgtaaactttggctagaagaaattgtgaaacttctagctaatttttgtcatttattcttctactaatatttctga |
209 |
Q |
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| T |
36971715 |
atatttatgtttttgttctgtacactgtaaactttggctagaagaaattgtgaaacttctagctaacttttgtcatttattcttctactaatatttctga |
36971814 |
T |
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| Q |
210 |
attctcagttgatggttcgcactgttgttg |
239 |
Q |
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| T |
36971815 |
attctcagttgatggttcgcactgttgttg |
36971844 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 33974435 - 33974401
Alignment:
| Q |
154 |
aaattgtgaaacttctagctaatttttgtcattta |
188 |
Q |
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| T |
33974435 |
aaattgtgaaacttctagctaatttttgtcattta |
33974401 |
T |
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