View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_low_23 (Length: 240)
Name: NF1553_low_23
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 35407788 - 35407561
Alignment:
| Q |
1 |
aaaataatata--gagtgtatcaaacagttgaggttgaatcttctgtttctccaaaaacannnnnnnnagtgtcatatggtaaagtaatcacacacnnnn |
98 |
Q |
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| T |
35407788 |
aaaataatataatgagtgtatcaaacagttgaggttgaatcttctgtttctccaaaaacattttttttagtgtcat--ggtaaagtaatcacacactttt |
35407691 |
T |
|
| Q |
99 |
nnnaaattgatgacattaactaaatattagtcatgacctaaaatttatagtaatttaatcctttatttcttttgnnnnnnnntgtaagaatcaatactca |
198 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35407690 |
tttaaattgatgacattaactaaatattagttatgacctaaaatttatagtaatttaatcctttatttcttttgaaaaaaaatgtaagaatcaatactca |
35407591 |
T |
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| Q |
199 |
attatttgacatttatttggtaatgatatt |
228 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35407590 |
attatttgacatttatttggtaatgatatt |
35407561 |
T |
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