View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1553_low_24 (Length: 237)
Name: NF1553_low_24
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21269654 - 21269874
Alignment:
| Q |
1 |
aatgtgttttcaattgtcaataaatttgagaggagaatgaaaagaagaaaagctaaaaagtaatggaatctcaaaatatgaatacgtgactccttcccta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21269654 |
aatgtgttttcaattgtcaataaatttgaaaggagaatgaatagaagaaaagctaaaaagtaatggaatctcaaaatatgaatacgtgactccttctctt |
21269753 |
T |
|
| Q |
101 |
aaatcaagaatcaaattaaaattgacatgagtggagcataagaaattccttcagataaatattctcacatcacacactctgtgaggtctgaaataaaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21269754 |
taatcaagaatcaaattaaaattgacatgagtggagcataagaaattccttcagataaatattctcacatcacacactctgtgaggtctgaaataaaaga |
21269853 |
T |
|
| Q |
201 |
tgaagcactaatatatgatac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21269854 |
tgaagcactaatatatgatac |
21269874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University