View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1553_low_3 (Length: 548)
Name: NF1553_low_3
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 16 - 540
Target Start/End: Complemental strand, 45286032 - 45285507
Alignment:
| Q |
16 |
atatccacaactactataccatacaacttctggcgggatccaaacacctccatttgctaatgaaacacataagttatctataagctgtggtaacaaagat |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45286032 |
atatccacaactgctataccatacaacttctgtcgggatccaaacacctccatttgctaatgaaacacataagttatctataagctgtggtaacaaagat |
45285933 |
T |
|
| Q |
116 |
ccaaaccagcttatgttacagggccacagtcatcattcagccatcatggtctatcccattcatgatttttctcaaacatttaccgtcttcatataagata |
215 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45285932 |
ccagaccagcttatgttacagggccacagtcatcattcagccatcatggtctatcccattcatgatttttctcaaacatttaccgtcttcatataatata |
45285833 |
T |
|
| Q |
216 |
cacatatacattgcagtacaaagtagacaaccggtgttcctatagctatatactatcaaatattgcaacaataccaaaactaattgcaattgacaactaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45285832 |
cacatatacattgcagtacaaagtagacaaccggtgttcctattgctagatactatcaaatattgcaacaataccaaaactaattgcaattgacaagtaa |
45285733 |
T |
|
| Q |
316 |
caactcacatatattagtcacactaaataatagagtacaaaatagcagtacaaa-ttttacaactttatattgagaactttacttaatggctggtacata |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45285732 |
caactcacatatattagtcacactaaataataaagtacaaaatagcagtacaaacttttacaactttatattgagaactttacttaatggctggtacata |
45285633 |
T |
|
| Q |
415 |
cttggtgttccatatgatgttgaaggggtaaatggtttaggcgtagattcctcccgaagcgcggttagagcagccttctttctcagcctatgttcgcggt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45285632 |
cttggtgttccatatgatgttgaaggggtaaatggtttaggcgtagattcctcccgaagcgcggttagagcagccttctttctcagcctatgttcgcggt |
45285533 |
T |
|
| Q |
515 |
gtctccttattttgtcctcctatgct |
540 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
45285532 |
gtctccttattttgtcctccaatgct |
45285507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University