View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_low_4 (Length: 465)
Name: NF1553_low_4
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_low_4 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: scaffold0259 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 12 - 449
Target Start/End: Complemental strand, 3327 - 2890
Alignment:
| Q |
12 |
tgagctgaaatttaggtagttggattacatgaactagactagatagtaccatgacttgttctacatgattagaaactaacttcctcccacttcttaatcc |
111 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3327 |
tgagctaaaatttaggtagttggattacatgaactagactagatagtaccatgacttgttctacatgattagaaactaacttcctcccacttcctaatcc |
3228 |
T |
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| Q |
112 |
tacgtaccactttactggaccagctaacaccactaatatatcctattttctctccaaacccaccttatattaaattctggtgctaacccacaattaggaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3227 |
tacgtaccactttactggaccagctaacaccactaatatatcctattttctctccaaacccaccttatattaaattctggtgctaacccacaattaggaa |
3128 |
T |
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| Q |
212 |
gagactgaaaacaattcataaggtctgcttaacaaaaccatctctctcaaagatctttgtagtgccatatgtttctatgtccatttaatcgccattttta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3127 |
gagactgaaaacaattcataaggtctgcttaacaaaaccatctctctcaaagatctttgtagtgccatatgtttctatgtccatttaatcgccattttta |
3028 |
T |
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| Q |
312 |
tttgctatttgttttgggccatgcgtttcattattctatctcaaccttgccattttaaattcaatcaaagccacgtcaagcatgtagacctttgagcaag |
411 |
Q |
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| T |
3027 |
tttgctatttgttttgggccatgcgtttcattattctatctcaaccttgccattttaaattcaatcaaagccacgacaagcatgtagacctttgagcaag |
2928 |
T |
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| Q |
412 |
agttaacgagaaccatggtttcacttttatgtaaaata |
449 |
Q |
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| T |
2927 |
agttaacgagaaccatggtttcacttttatgtaaaata |
2890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 195 - 449
Target Start/End: Complemental strand, 10530777 - 10530508
Alignment:
| Q |
195 |
taacccacaattaggaagagactgaaaacaattcataaggtctgcttaacaaaaccat-----------ctctctcaaagatctttgtagtgccatatgt |
283 |
Q |
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| T |
10530777 |
taacccacaattaggaagagacggaaaacaattcataaggtctgcttaacaaaaccatatacacaccatctctctcaaagatctttgtagtgccatatgt |
10530678 |
T |
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| Q |
284 |
ttctatgtccattt--aatcgccatttttatttgctatttgttttgggccatgcgtttcattattctatctcaaccttgccattttaaattcaatcaaag |
381 |
Q |
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| T |
10530677 |
ttctatgtccatttttaatcaccatttttatttcctatttgttttgggccatgcgtttcattattctatctcaaccttgccattttaaattcaatcaaag |
10530578 |
T |
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| Q |
382 |
ccacgtcaagcatgtagacctttgagcaagagttaac--gagaaccatggtttcacttttatgtaaaata |
449 |
Q |
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| T |
10530577 |
ctacgacaagcatgtagacctttgagcaagagttaacgagagaaccatggtttcacttttatgtaaaata |
10530508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 297 - 410
Target Start/End: Complemental strand, 9818657 - 9818544
Alignment:
| Q |
297 |
taatcgccatttttatttgctatttgttttgggccatgcgtttcattattctatctcaaccttgccattttaaattcaatcaaagccacgtcaagcatgt |
396 |
Q |
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| T |
9818657 |
taatcaccatttttatttcctatttgttttgggccatgcgtttcattattctatctcaaccttgccattttaaattcaatcaaagccacgacaagcatgt |
9818558 |
T |
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| Q |
397 |
agacctttgagcaa |
410 |
Q |
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| T |
9818557 |
agacctttgagcaa |
9818544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 9818744 - 9818687
Alignment:
| Q |
195 |
taacccacaattaggaagagactgaaaacaattcataaggtctgcttaacaaaaccat |
252 |
Q |
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| T |
9818744 |
taacccacaattaggaagagacttaaaacaattcataaggtctgcttaacaaaaccat |
9818687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 16108445 - 16108408
Alignment:
| Q |
337 |
tttcattattctatctcaaccttgccattttaaattca |
374 |
Q |
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| T |
16108445 |
tttcattcttctatttcaaccttgccattttaaattca |
16108408 |
T |
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