View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1553_low_6 (Length: 429)

Name: NF1553_low_6
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1553_low_6
NF1553_low_6
[»] chr8 (39 HSPs)
chr8 (22-404)||(44633449-44633830)
chr8 (172-404)||(39568333-39568564)
chr8 (150-405)||(45378355-45378605)
chr8 (164-333)||(39269492-39269662)
chr8 (276-406)||(39567063-39567193)
chr8 (276-406)||(39270722-39270852)
chr8 (276-403)||(44632709-44632836)
chr8 (59-126)||(39270419-39270486)
chr8 (59-126)||(39567461-39567528)
chr8 (59-126)||(45377513-45377580)
chr8 (337-406)||(9311021-9311090)
chr8 (351-406)||(14816570-14816625)
chr8 (351-406)||(14829115-14829170)
chr8 (337-403)||(9312165-9312231)
chr8 (318-401)||(22191876-22191958)
chr8 (355-406)||(45377427-45377478)
chr8 (340-406)||(10134608-10134674)
chr8 (328-406)||(22013932-22014010)
chr8 (328-406)||(43633123-43633201)
chr8 (353-406)||(13463153-13463206)
chr8 (69-106)||(45378302-45378339)
chr8 (320-372)||(21015213-21015265)
chr8 (328-406)||(2221594-2221672)
chr8 (320-406)||(9115601-9115687)
chr8 (328-406)||(9739765-9739843)
chr8 (328-406)||(11713200-11713278)
chr8 (328-406)||(22013462-22013540)
chr8 (328-406)||(27786465-27786543)
chr8 (328-406)||(31445669-31445747)
chr8 (328-406)||(41154617-41154695)
chr8 (328-406)||(41154994-41155072)
chr8 (328-406)||(42193779-42193857)
chr8 (328-406)||(45123220-45123298)
chr8 (369-406)||(14819391-14819428)
chr8 (321-406)||(22594318-22594403)
chr8 (69-106)||(39568269-39568306)
chr8 (328-405)||(40229091-40229168)
chr8 (320-388)||(2633803-2633871)
chr8 (69-101)||(39269687-39269719)
[»] chr6 (30 HSPs)
chr6 (22-406)||(5659867-5660249)
chr6 (164-406)||(21282817-21283058)
chr6 (276-404)||(5659106-5659235)
chr6 (276-406)||(21611915-21612045)
chr6 (22-130)||(21612422-21612531)
chr6 (298-400)||(21612831-21612933)
chr6 (38-130)||(21612570-21612663)
chr6 (59-126)||(21283557-21283624)
chr6 (337-406)||(29744781-29744850)
chr6 (337-406)||(29751129-29751198)
chr6 (320-406)||(20489413-20489498)
chr6 (349-406)||(14403688-14403745)
chr6 (338-406)||(12260446-12260514)
chr6 (164-199)||(21612691-21612726)
chr6 (347-404)||(17971846-17971903)
chr6 (320-405)||(20488261-20488346)
chr6 (230-267)||(21612771-21612808)
chr6 (345-406)||(29465755-29465816)
chr6 (345-406)||(29467282-29467343)
chr6 (328-403)||(18683553-18683628)
chr6 (367-406)||(21283922-21283961)
chr6 (340-406)||(959309-959375)
chr6 (328-406)||(3618781-3618859)
chr6 (328-406)||(17383735-17383813)
chr6 (328-406)||(21271486-21271564)
chr6 (328-406)||(21272099-21272177)
chr6 (328-406)||(22498747-22498825)
chr6 (320-406)||(28866392-28866478)
chr6 (328-406)||(31739895-31739973)
chr6 (338-406)||(20745585-20745653)
[»] chr4 (46 HSPs)
chr4 (164-406)||(702467-702708)
chr4 (164-406)||(770766-771007)
chr4 (166-406)||(756487-756726)
chr4 (172-406)||(35060278-35060511)
chr4 (172-404)||(16039503-16039734)
chr4 (276-406)||(35055333-35055463)
chr4 (294-406)||(701633-701745)
chr4 (294-406)||(769932-770044)
chr4 (276-406)||(757427-757557)
chr4 (315-406)||(16038275-16038366)
chr4 (59-126)||(702033-702100)
chr4 (59-126)||(757085-757152)
chr4 (59-126)||(770332-770399)
chr4 (336-406)||(36220588-36220658)
chr4 (59-126)||(35055737-35055804)
chr4 (337-406)||(11038577-11038646)
chr4 (59-126)||(16038664-16038731)
chr4 (340-406)||(51645963-51646029)
chr4 (318-405)||(4890827-4890915)
chr4 (340-405)||(36219408-36219473)
chr4 (338-406)||(40681491-40681559)
chr4 (328-406)||(31487978-31488056)
chr4 (328-405)||(1098376-1098453)
chr4 (69-106)||(16039437-16039474)
chr4 (69-106)||(35060215-35060252)
chr4 (318-406)||(4892081-4892169)
chr4 (337-385)||(51399237-51399285)
chr4 (164-199)||(33075036-33075071)
chr4 (339-406)||(41845501-41845568)
chr4 (328-406)||(1098053-1098131)
chr4 (320-406)||(14525909-14525995)
chr4 (328-406)||(17475397-17475475)
chr4 (328-406)||(17475863-17475941)
chr4 (328-406)||(20614596-20614674)
chr4 (320-406)||(22679633-22679719)
chr4 (328-406)||(25618436-25618514)
chr4 (328-406)||(41610127-41610205)
chr4 (328-406)||(42369489-42369567)
chr4 (320-406)||(53594984-53595070)
chr4 (328-406)||(56271196-56271274)
chr4 (337-402)||(50551403-50551468)
chr4 (69-101)||(702411-702443)
chr4 (69-101)||(756759-756791)
chr4 (69-101)||(770710-770742)
chr4 (339-403)||(9086290-9086354)
chr4 (358-406)||(11039740-11039788)
[»] scaffold0031 (6 HSPs)
scaffold0031 (164-406)||(123424-123665)
scaffold0031 (164-406)||(134300-134541)
scaffold0031 (276-406)||(129347-129477)
scaffold0031 (59-126)||(128992-129059)
scaffold0031 (69-101)||(123694-123726)
scaffold0031 (69-101)||(134565-134597)
[»] chr1 (49 HSPs)
chr1 (164-406)||(51599250-51599491)
chr1 (212-406)||(16962010-16962203)
chr1 (276-406)||(16963354-16963484)
chr1 (276-406)||(51597961-51598091)
chr1 (59-126)||(51598362-51598429)
chr1 (59-126)||(16962999-16963066)
chr1 (337-406)||(46015846-46015915)
chr1 (341-405)||(50682580-50682644)
chr1 (340-403)||(33333404-33333467)
chr1 (345-406)||(6241253-6241314)
chr1 (321-406)||(24326582-24326667)
chr1 (321-406)||(24332287-24332372)
chr1 (337-406)||(46014701-46014770)
chr1 (338-406)||(15073917-15073985)
chr1 (331-406)||(47113097-47113172)
chr1 (328-406)||(6714683-6714761)
chr1 (340-406)||(33332177-33332243)
chr1 (345-406)||(6242694-6242755)
chr1 (321-385)||(29021603-29021667)
chr1 (338-406)||(36143125-36143193)
chr1 (321-393)||(52750175-52750247)
chr1 (339-406)||(7964113-7964180)
chr1 (321-404)||(31697117-31697200)
chr1 (328-406)||(3798324-3798402)
chr1 (328-406)||(3798690-3798768)
chr1 (320-406)||(5804693-5804779)
chr1 (320-406)||(6328302-6328388)
chr1 (340-406)||(10719356-10719422)
chr1 (340-406)||(10719625-10719691)
chr1 (328-406)||(14244166-14244244)
chr1 (328-406)||(14244540-14244618)
chr1 (328-406)||(24370115-24370193)
chr1 (320-406)||(35368856-35368941)
chr1 (328-406)||(37483054-37483132)
chr1 (328-406)||(37708192-37708270)
chr1 (328-406)||(38979671-38979749)
chr1 (328-406)||(38980034-38980112)
chr1 (328-406)||(44114498-44114576)
chr1 (328-406)||(46448721-46448799)
chr1 (328-406)||(50138495-50138573)
chr1 (328-406)||(50227894-50227972)
chr1 (340-405)||(32193987-32194052)
chr1 (328-405)||(46448218-46448295)
chr1 (340-404)||(13834713-13834777)
chr1 (321-393)||(29022522-29022594)
chr1 (338-406)||(32193517-32193585)
chr1 (327-395)||(35369322-35369390)
chr1 (338-406)||(45678712-45678780)
chr1 (69-101)||(51599192-51599224)
[»] chr3 (40 HSPs)
chr3 (175-405)||(21815909-21816139)
chr3 (276-405)||(21817328-21817457)
chr3 (318-406)||(14859103-14859191)
chr3 (337-406)||(27688486-27688555)
chr3 (338-406)||(39992484-39992552)
chr3 (349-406)||(20184448-20184505)
chr3 (349-406)||(27695576-27695633)
chr3 (339-404)||(39991507-39991572)
chr3 (338-406)||(32304232-32304300)
chr3 (335-406)||(20185800-20185871)
chr3 (327-406)||(40503711-40503790)
chr3 (340-406)||(43464812-43464878)
chr3 (328-406)||(45940660-45940738)
chr3 (321-406)||(36982651-36982735)
chr3 (321-406)||(37008090-37008174)
chr3 (76-120)||(36982928-36982972)
chr3 (76-120)||(37008367-37008411)
chr3 (339-403)||(49221510-49221574)
chr3 (327-402)||(27990252-27990326)
chr3 (320-371)||(28919124-28919175)
chr3 (164-199)||(36982856-36982891)
chr3 (164-199)||(37008295-37008330)
chr3 (328-406)||(12739964-12740042)
chr3 (340-406)||(13301948-13302014)
chr3 (340-406)||(13312604-13312670)
chr3 (328-406)||(13355175-13355253)
chr3 (92-130)||(21816177-21816215)
chr3 (328-406)||(24242977-24243055)
chr3 (340-406)||(24244765-24244831)
chr3 (320-398)||(50530625-50530703)
chr3 (336-406)||(52857273-52857343)
chr3 (327-385)||(54831876-54831934)
chr3 (329-406)||(12740335-12740412)
chr3 (353-406)||(17509464-17509517)
chr3 (209-250)||(36982826-36982867)
chr3 (209-250)||(37008265-37008306)
chr3 (328-405)||(39198418-39198495)
chr3 (353-406)||(42540163-42540216)
chr3 (320-372)||(4953405-4953457)
chr3 (338-406)||(45940215-45940283)
[»] chr7 (34 HSPs)
chr7 (178-406)||(21709158-21709386)
chr7 (209-406)||(26025728-26025924)
chr7 (276-405)||(26024888-26025017)
chr7 (294-406)||(21710547-21710659)
chr7 (59-126)||(26025287-26025354)
chr7 (59-126)||(21710193-21710259)
chr7 (318-404)||(10990568-10990654)
chr7 (326-406)||(10986695-10986775)
chr7 (340-406)||(45088244-45088310)
chr7 (345-406)||(40738193-40738254)
chr7 (340-404)||(45087067-45087131)
chr7 (345-404)||(19543492-19543551)
chr7 (164-199)||(26025704-26025739)
chr7 (328-406)||(3217734-3217812)
chr7 (328-406)||(45457084-45457162)
chr7 (327-384)||(14682973-14683030)
chr7 (338-406)||(30766674-30766742)
chr7 (320-403)||(38030332-38030413)
chr7 (335-406)||(26041802-26041873)
chr7 (339-406)||(43704945-43705012)
chr7 (328-406)||(7776937-7777015)
chr7 (328-406)||(27284242-27284320)
chr7 (328-406)||(27284589-27284667)
chr7 (328-406)||(31852062-31852140)
chr7 (328-406)||(36951056-36951134)
chr7 (328-406)||(39143491-39143569)
chr7 (328-406)||(40852140-40852218)
chr7 (328-406)||(45456734-45456812)
chr7 (339-404)||(42287313-42287378)
chr7 (69-101)||(21709415-21709447)
chr7 (338-406)||(23440909-23440977)
chr7 (69-101)||(26025648-26025680)
chr7 (338-406)||(37374447-37374515)
chr7 (338-406)||(47987327-47987395)
[»] chr2 (24 HSPs)
chr2 (320-406)||(36889719-36889805)
chr2 (320-406)||(36888338-36888424)
chr2 (350-406)||(35738363-35738419)
chr2 (338-406)||(7184881-7184949)
chr2 (336-406)||(34166843-34166914)
chr2 (328-406)||(43820308-43820386)
chr2 (340-405)||(13809426-13809491)
chr2 (337-406)||(13810569-13810636)
chr2 (320-406)||(15044739-15044825)
chr2 (328-406)||(26424804-26424882)
chr2 (353-406)||(3603504-3603557)
chr2 (338-403)||(40468049-40468114)
chr2 (318-406)||(5381536-5381624)
chr2 (338-406)||(19297527-19297595)
chr2 (345-405)||(3607036-3607098)
chr2 (328-406)||(4602797-4602875)
chr2 (327-385)||(8885679-8885737)
chr2 (340-406)||(20686669-20686735)
chr2 (328-406)||(33200028-33200106)
chr2 (328-406)||(34618502-34618580)
chr2 (320-406)||(39109475-39109561)
chr2 (353-406)||(8028966-8029019)
chr2 (336-385)||(38978912-38978961)
chr2 (338-406)||(32194819-32194887)
[»] scaffold0029 (2 HSPs)
scaffold0029 (340-406)||(71821-71887)
scaffold0029 (339-406)||(70669-70736)
[»] scaffold0394 (1 HSPs)
scaffold0394 (337-406)||(14270-14340)
[»] scaffold0220 (1 HSPs)
scaffold0220 (320-406)||(25963-26049)
[»] chr5 (27 HSPs)
chr5 (339-406)||(19718881-19718948)
chr5 (321-406)||(25333161-25333246)
chr5 (321-385)||(37192445-37192509)
chr5 (321-385)||(38384889-38384953)
chr5 (328-406)||(16669506-16669584)
chr5 (320-406)||(30112682-30112768)
chr5 (321-406)||(30645700-30645785)
chr5 (337-385)||(35463861-35463909)
chr5 (340-403)||(1983550-1983613)
chr5 (328-406)||(435554-435632)
chr5 (340-406)||(4959561-4959627)
chr5 (328-406)||(16670008-16670086)
chr5 (328-406)||(17339795-17339873)
chr5 (328-406)||(24100680-24100758)
chr5 (328-406)||(27851023-27851101)
chr5 (328-406)||(29962161-29962239)
chr5 (328-406)||(30012559-30012637)
chr5 (320-406)||(30644914-30645000)
chr5 (328-406)||(38312325-38312403)
chr5 (327-385)||(42766838-42766896)
chr5 (344-401)||(9378728-9378785)
chr5 (339-372)||(14662662-14662695)
chr5 (175-208)||(24648582-24648615)
chr5 (345-406)||(37966814-37966875)
chr5 (338-406)||(6793767-6793835)
chr5 (321-385)||(37191614-37191678)
chr5 (340-404)||(42381204-42381268)
[»] scaffold0194 (2 HSPs)
scaffold0194 (340-406)||(19237-19303)
scaffold0194 (340-404)||(18070-18134)
[»] scaffold0054 (2 HSPs)
scaffold0054 (320-406)||(57530-57616)
scaffold0054 (320-406)||(57022-57107)
[»] scaffold0006 (1 HSPs)
scaffold0006 (328-406)||(83366-83444)
[»] scaffold0259 (1 HSPs)
scaffold0259 (321-387)||(12061-12127)
[»] scaffold0150 (1 HSPs)
scaffold0150 (321-387)||(38901-38967)
[»] scaffold0002 (1 HSPs)
scaffold0002 (328-406)||(283154-283232)
[»] scaffold0430 (1 HSPs)
scaffold0430 (345-401)||(6233-6289)


Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 22 - 404
Target Start/End: Original strand, 44633449 - 44633830
Alignment:
Q  22 ttagtcattccaaatcttaaagaaattcacaaataaaatgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttg 121  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  44633449 ttagtcattccaaatcttaaagaaattcagaaataaaatgataatgggtttagatttggatttcatatgataaaggtaaaattttatttgatgagttttg 44633548  T
Q  122 ttgtttaagnnnnnnncttcttctggatttgtatgaaggtggatgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaat 221  Q
    |||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44633549 ttgtttaagtttttttcttcttctgggtttgtatgaaggtggatgaaggttttatgaagatttgttgaagaagatgaaggcgaggaggaagaagatgaat 44633648  T
Q  222 ataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatattt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||||||||||||||||||||    
T  44633649 ataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacg-tttttttaataaaattaacggaagagaccaatttatgtaaaagagacatattt 44633747  T
Q  322 aaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44633748 aaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaaccaaaatagcaattaag 44633830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 172 - 404
Target Start/End: Original strand, 39568333 - 39568564
Alignment:
Q  172 tttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnn 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        
T  39568333 tttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaatttcaaccaatgcgaaaatgacacgtgtgcttgagttaacg-ttt 39568431  T
Q  272 nnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaa 371  Q
        |||||||||||||||   |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| ||    
T  39568432 ttttaataaaattaacggaatggaccaatttatgtaacggagacatatttaaaggactcaaacaaactttttattaattatggaaccaaaacgatactaa 39568531  T
Q  372 aaaattagttaaggaacgaaaatagcaattaag 404  Q
    |||||||||||||| || |||||||||||||||    
T  39568532 aaaattagttaagggacaaaaatagcaattaag 39568564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 150 - 405
Target Start/End: Original strand, 45378355 - 45378605
Alignment:
Q  150 ttgtatgaaggtggatgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgaca 249  Q
    |||||||||||   |||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  45378355 ttgtatgaagggttatgaaggttttatgaagatttgttgaaga---tgaaggtgaggaggaggaagatgaatataaattccaaccattgcgaaaatgaca 45378451  T
Q  250 cgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaat 349  Q
         |||||||||||||        |||||||||||||||  |||||||||||| ||| |||| ||||||||||||||| ||| | | |||||||||||    
T  45378452 tacacgcttgagttaacgtttttt--aataaaattaacggaatagaccaatttatataatagaggcatatttaaaggactgaaacataatttttattaat 45378549  T
Q  350 tatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 405  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  45378550 tatgggaccaaagcgataccaaaaaattatttaagggacgaaaatagcaattaagc 45378605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 164 - 333
Target Start/End: Complemental strand, 39269662 - 39269492
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39269662 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttaagtt 39269563  T
Q  264 aacgnnnnnnnnaataaaattaacggatgagaccaatt--tatgtaaaagagacatatttaaaggactcaaa 333  Q
    ||||        ||||||||||||||| ||||||||||  |||||||  |||||||||||||||||||||||    
T  39269562 aacg-tttttttaataaaattaacggaagagaccaatttatatgtaacggagacatatttaaaggactcaaa 39269492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 276 - 406
Target Start/End: Complemental strand, 39567193 - 39567063
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    ||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  39567193 aataaaattgacggaagggaccaatttatgtaacagagacatatttaaaggactcaaatgaactttttatcaattatgggaccaaagcgataccaaaaaa 39567094  T
Q  376 ttagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||| ||||||||| ||||||||||    
T  39567093 ttagttaagggacgaaaataacaattaagcc 39567063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 276 - 406
Target Start/End: Original strand, 39270722 - 39270852
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    ||||||||| ||||| | |||||||||||||||   ||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||    
T  39270722 aataaaattgacggaagggaccaatttatgtaatgtagacatatttaaaggactcaaacggactttttattaattatgggaccaaaacgataccaaaaaa 39270821  T
Q  376 ttagttaaggaacgaaaatagcaattaagcc 406  Q
    | |||||||| ||||||||||||||||||||    
T  39270822 taagttaagggacgaaaatagcaattaagcc 39270852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 403
Target Start/End: Complemental strand, 44632836 - 44632709
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    ||||||||||||||| |  || |||||||||||  |||||||||||||||||||||||  || |||||||||||| |||||||||| |||||||||||||    
T  44632836 aataaaattaacggaaggaactaatttatgtaacggagacatatttaaaggactcaaacgaattttttattaattttgggaccaaaacgataccaaaaaa 44632737  T
Q  376 ttagttaaggaacgaaaatagcaattaa 403  Q
    ||| |||||  |||||||||||||||||    
T  44632736 ttaattaagagacgaaaatagcaattaa 44632709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 39270486 - 39270419
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  39270486 atgataaagggtttagatttagatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 39270419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 39567461 - 39567528
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  39567461 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatctgatgagttttgttgtt 39567528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 45377513 - 45377580
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||    
T  45377513 atgataaagggtttagatttggatttcaaatgataaatgtaaagttttatttgatgagttttgttgtt 45377580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 9311090 - 9311021
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||    
T  9311090 acttttttttagttatgggaccaaagcgataccaaaaaattagataagggactaaaatagcaattaagcc 9311021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 14816625 - 14816570
Alignment:
Q  351 atgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  14816625 atgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 14816570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 14829115 - 14829170
Alignment:
Q  351 atgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  14829115 atgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 14829170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 403
Target Start/End: Original strand, 9312165 - 9312231
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 403  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||| | || ||||||||||||||    
T  9312165 acttttttttagttatgggatcaaagcgataccaaaaaattagttaaaggactaaaatagcaattaa 9312231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 401
Target Start/End: Original strand, 22191876 - 22191958
Alignment:
Q  318 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaatt 401  Q
    ||||||| |||||||| | ||||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||| |||||    
T  22191876 atttaaaagactcaaacagactttttattacttacgggaccaaagcgatactaaaaaa-tacttaagggacgaaaataacaatt 22191958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 45377478 - 45377427
Alignment:
Q  355 gaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||||| | |||||| ||||||||| ||||||||||    
T  45377478 gaccaaagcgataccaaaaaatcaattaagggacgaaaataacaattaagcc 45377427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 10134674 - 10134608
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| |||||||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  10134674 ttttattacttatgggaccaaagcgataccaaataaatacttaagggacaaaaagagcatttaagcc 10134608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 22013932 - 22014010
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  22013932 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaagagcatttaagcc 22014010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 43633201 - 43633123
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  43633201 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaaaagcatttaagcc 43633123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 13463153 - 13463206
Alignment:
Q  353 gggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||| ||| | |||||| ||||||| ||||||||||||    
T  13463153 gggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaagcc 13463206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 45378302 - 45378339
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaagtttt 106  Q
    |||||||||||||||||||| |||||||||||||||||    
T  45378302 gtttagatttggatttcatatgataaaggtaaagtttt 45378339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 21015213 - 21015265
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaa 372  Q
    |||| |||| |||| | ||||||||||| ||||||||||||||||||||||||    
T  21015213 ttaagggacccaaacagactttttattacttatgggaccaaagcgataccaaa 21015265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 2221672 - 2221594
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  2221672 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 2221594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 9115687 - 9115601
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| | ||||| || |||||| ||| ||| |||||||||||||||||||  || || |||||| || ||||||||| |||||||    
T  9115687 ttaaagtattcaaacaatcttttttttagttaggggaccaaagcgataccaactaaatacttaagggaccaaaatagcatttaagcc 9115601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 9739765 - 9739843
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  9739765 ctcaaagaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 9739843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 11713278 - 11713200
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  11713278 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 11713200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 22013540 - 22013462
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  22013540 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 22013462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 27786465 - 27786543
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  27786465 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 27786543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 31445747 - 31445669
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  31445747 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 31445669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 41154695 - 41154617
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  41154695 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 41154617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 41154994 - 41155072
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  41154994 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 41155072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 42193857 - 42193779
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  42193857 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 42193779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 45123298 - 45123220
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  45123298 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 45123220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 14819391 - 14819428
Alignment:
Q  369 caaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||||||||||| || |||||||||||||||||    
T  14819391 caaaaaattagttaagggactaaaatagcaattaagcc 14819428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 22594403 - 22594318
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || |||||| || |||| | || |||||||    
T  22594403 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaagggaccaaaagaacatttaagcc 22594318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 39568269 - 39568306
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaagtttt 106  Q
    |||||||||||||||||| | |||||||||||||||||    
T  39568269 gtttagatttggatttcaaatgataaaggtaaagtttt 39568306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 40229168 - 40229091
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 405  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| ||||||    
T  40229168 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaaaagcatttaagc 40229091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 2633803 - 2633871
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaac 388  Q
    |||||| ||||||| || |||||| ||||||| ||||||||||||||| |||  || || |||||||||    
T  2633803 ttaaagtactcaaacaatcttttttttaattaagggaccaaagcgataacaattaaatacttaaggaac 2633871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 39269719 - 39269687
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaa 101  Q
    |||||||||||||||||||| ||||||||||||    
T  39269719 gtttagatttggatttcatatgataaaggtaaa 39269687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 406
Target Start/End: Original strand, 5659867 - 5660249
Alignment:
Q  22 ttagtcattccaaatcttaaagaaattcacaaat-aaaatgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagtttt 120  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||||||||| |||| |||||||||||    
T  5659867 ttagtcattccaaatcttaaagaaattcacaaattaaaatgataatgagtttagattaggatttcatatgataaaggtaaagtattatatgatgagtttt 5659966  T
Q  121 gttgtttaagnnnnnnncttcttctggatttgtatgaaggtggatgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaa 220  Q
    ||||||||||        || || |   ||| | ||    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5659967 gttgtttaagtttttttttttttttt--tttctctgggtttgtatgaaggttttatgaagatttgttgaagaagatgaagatgaggaggaagaagatgaa 5660064  T
Q  221 tataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatt 320  Q
    |||||||||||||||||| |||||||||||||||||||||||||||         ||||||||||||||| |  |||||||||||||| |||||||||||    
T  5660065 tataaattccaaccaatgtgaaaatgacacgtgtgcttgagttaacatattttttaataaaattaacggaaggaaccaatttatgtaacagagacatatt 5660164  T
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| |||||   || |||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||    
T  5660165 taaaggattcaaacggac-ttttattaattatgagaccaaaacgataccaaaaaattagtttagggacgaaaatagcaattaagcc 5660249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 164 - 406
Target Start/End: Complemental strand, 21283058 - 21282817
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||    
T  21283058 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaagataaattccaactaatgcgaaaatgacacatgtgcttgagtt 21282959  T
Q  264 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 363  Q
    ||||        ||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  21282958 aacgttttttt-aataaaattaacggaagggaccaatttatgtaacagagacatatttaaaagactcaaacagactttttattaattatgggaccaaagc 21282860  T
Q  364 gataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||    
T  21282859 gatacaaaaaaattaattaagggacgaaaatagcaattaagcc 21282817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 276 - 404
Target Start/End: Complemental strand, 5659235 - 5659106
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    ||||||||||||||| |   ||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||    
T  5659235 aataaaattaacggaaggagccaatttatgtaacagagacatatttaaaggactcaaacagactttttattaattatgggaccaaagtgataccaaaaaa 5659136  T
Q  376 ttagttaaggaacg-aaaatagcaattaag 404  Q
    |||||||||| ||| |||||||||||||||    
T  5659135 ttagttaagggacgaaaaatagcaattaag 5659106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 276 - 406
Target Start/End: Complemental strand, 21612045 - 21611915
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    |||||||||||| || | |||||| |||||||| |||||||||||||||| |||||||   | ||||||||||||||||||||||| |||||||||||||    
T  21612045 aataaaattaactgaagggaccaaattatgtaacagagacatatttaaagaactcaaacggattttttattaattatgggaccaaatcgataccaaaaaa 21611946  T
Q  376 ttagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||| ||||||||||||||||||||    
T  21611945 ttagttaagggacgaaaatagcaattaagcc 21611915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 21612422 - 21612531
Alignment:
Q  22 ttagtcattccaaatcttaaagaaattcacaaataaaa-tgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagtttt 120  Q
    |||||||||||||||||||| ||||||||||||| ||| |||||||| |||| ||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  21612422 ttagtcattccaaatcttaaggaaattcacaaattaaagtgataatgagttttgatttggatttcatatgataaaggtaaaattttatttgataagtttt 21612521  T
Q  121 gttgtttaag 130  Q
    ||||||||||    
T  21612522 gttgtttaag 21612531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 21612831 - 21612933
Alignment:
Q  298 aatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagc 397  Q
    ||||| |||||  ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |    
T  21612831 aatttttgtaacggagacatatttaaaggactcaaacagactttttattaattatgggaccaaaacgataccaaaaaattaattaagggacgaaaataac 21612930  T
Q  398 aat 400  Q
    |||    
T  21612931 aat 21612933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 21612570 - 21612663
Alignment:
Q  38 ttaaagaaattcacaaat-aaaatgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtttaag 130  Q
    |||| ||||||||||||| |||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  21612570 ttaaggaaattcacaaattaaaatgataatgagttttgatttggatttcatatgataaaggtaaaattttatttgatgagttttgttgtttaag 21612663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 21283624 - 21283557
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    |||||||  ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  21283624 atgataaatggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 21283557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 29744850 - 29744781
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| ||| ||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||    
T  29744850 acttttttttagttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcc 29744781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 29751129 - 29751198
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| ||| ||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||    
T  29751129 acttttttttagttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcc 29751198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 20489413 - 20489498
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||| | ||||||||||| ||||||||||||||| |||| ||||||  |  ||||| || |||||||||||||||||    
T  20489413 ttaaaggactcaaacatactttttattacttatgggaccaaagcaatactaaaaaa-aacataagggactaaaatagcaattaagcc 20489498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 14403745 - 14403688
Alignment:
Q  349 ttatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||| |||||||| ||||||| ||||| || |||||||||||||||||    
T  14403745 ttatgggaccaaagtgataccaacaaattaggtaagggactaaaatagcaattaagcc 14403688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 12260514 - 12260446
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||||||||||||| ||| | |||||| ||||||| ||||||||||||    
T  12260514 cttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaagcc 12260446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 21612691 - 21612726
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaa 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  21612691 atgaaggttttatgaagatttgttgaagaagatgaa 21612726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 17971846 - 17971903
Alignment:
Q  347 aattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 404  Q
    ||||| |||||||||||||||| |  ||| ||||||||||||||||||| ||||||||    
T  17971846 aattaagggaccaaagcgatactactaaaatagttaaggaacgaaaatatcaattaag 17971903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 20488346 - 20488261
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 405  Q
    |||||||||| ||| ||||||||||||| |||| | ||||||||||||| |||||  || |||||  || |||||| |||||||||    
T  20488346 ttaaaggactgaaacaaactttttattacttatagaaccaaagcgatactaaaaatatacttaagagactaaaataacaattaagc 20488261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 21612771 - 21612808
Alignment:
Q  230 caaccaatgcgaaaatgacacgtgtgcttgagttaacg 267  Q
    |||||||||||||||||||| |||||||||||||||||    
T  21612771 caaccaatgcgaaaatgacatgtgtgcttgagttaacg 21612808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 29465816 - 29465755
Alignment:
Q  345 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| ||| |||||| ||||| ||  |||||||||||| ||||||||||||||||||||    
T  29465816 ttaattaaggggccaaagtgatactaattaattagttaagggacgaaaatagcaattaagcc 29465755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 29467282 - 29467343
Alignment:
Q  345 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||  |||||||||| |||| ||| || ||||||||| ||||||||||||||||||||    
T  29467282 ttaattaaaggaccaaagcaatactaaataaatagttaagggacgaaaatagcaattaagcc 29467343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 403
Target Start/End: Complemental strand, 18683628 - 18683553
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 403  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || |||||||||||| |||| |||| ||||    
T  18683628 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaggaactaaaagagcatttaa 18683553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 406
Target Start/End: Original strand, 21283922 - 21283961
Alignment:
Q  367 accaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  21283922 accaaaaaattagttaagggacgaaaataacaattaagcc 21283961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 959309 - 959375
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| |||||||||||||||||| ||||| || || |||||| || |||| |||| |||||||    
T  959309 ttttattacttatgggaccaaagcgatcccaaataaatacttaagggaccaaaagagcatttaagcc 959375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 3618859 - 3618781
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  3618859 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggactaaaaaagcatttaagcc 3618781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 17383813 - 17383735
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  17383813 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 17383735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 21271564 - 21271486
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  21271564 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 21271486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 21272099 - 21272177
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  21272099 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 21272177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 22498747 - 22498825
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  22498747 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 22498825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 28866392 - 28866478
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || |||||  || |||| |||| |||||||    
T  28866392 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatatttaagagaccaaaagagcatttaagcc 28866478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 31739895 - 31739973
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  31739895 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 31739973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 20745653 - 20745585
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||| ||||||||||||||| ||| | |||||| ||||||| || |||||||||    
T  20745653 cttttttttacttaagggatcaaagcgataccaaataataacttaagggacgaaaagagtaattaagcc 20745585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 164 - 406
Target Start/End: Original strand, 702467 - 702708
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702467 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 702566  T
Q  264 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 363  Q
    |||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||| ||    |||||||||||||||||||||||||||    
T  702567 aac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggacttaagcggactttttattaattatgggaccaaagc 702665  T
Q  364 gataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  702666 gataccaaaaaattagttaagggacgaaaatagcaattaagcc 702708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 164 - 406
Target Start/End: Original strand, 770766 - 771007
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  770766 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 770865  T
Q  264 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 363  Q
    |||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||| ||    |||||||||||||||||||||||||||    
T  770866 aac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggacttaagcggactttttattaattatgggaccaaagc 770964  T
Q  364 gataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  770965 gataccaaaaaattagttaagggacgaaaatagcaattaagcc 771007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 166 - 406
Target Start/End: Complemental strand, 756726 - 756487
Alignment:
Q  166 gaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaa 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  756726 gaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaa 756627  T
Q  266 cgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcga 365  Q
    |         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||| ||    |||||||||||||||||||||||||||||    
T  756626 c-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggacttaagcggactttttattaattatgggaccaaagcga 756528  T
Q  366 taccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  756527 taccaaaaaattagttaagggacgaaaatagcaattaagcc 756487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 172 - 406
Target Start/End: Original strand, 35060278 - 35060511
Alignment:
Q  172 tttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnn 271  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |        
T  35060278 tttatgaagatttgttgaagaaggtgaaggtgaggaggaagaagatgaatataaattccaaccaatgcaaaaatgacacgtgtgcttgagttaatgtttt 35060377  T
Q  272 nnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaa 371  Q
        ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  35060378 ttt-aataaaattaacggaagggaccaatttatgtaacagagacatatttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaa 35060476  T
Q  372 aaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||| ||||||||||||||||||||    
T  35060477 aaaattagttaagggacgaaaatagcaattaagcc 35060511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 172 - 404
Target Start/End: Original strand, 16039503 - 16039734
Alignment:
Q  172 tttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnn 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||        
T  16039503 tttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattctaaccaatgcgaaaatgacatgtgtgtttgagttaacgtttt 16039602  T
Q  272 nnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaa 371  Q
        ||||||||||||||| | |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||| || |||||||||    
T  16039603 ttt-aataaaattaacggaagggaccaatttatgtaatggagacatatttaaaggactcaaacggactttttattaattatgggaccgaaacgataccaa 16039701  T
Q  372 aaaattagttaaggaacgaaaatagcaattaag 404  Q
    |||||||||||||| || |||||||||||||||    
T  16039702 aaaattagttaagggacaaaaatagcaattaag 16039734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 276 - 406
Target Start/End: Complemental strand, 35055463 - 35055333
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    ||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  35055463 aataaaattgacggaggggaccaatttatgtaacagagacatatttaaaggactcaaatggactttttattaattatgggaccaaagcgataccaaaaaa 35055364  T
Q  376 ttagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||| ||||||||| ||||||||||    
T  35055363 ttagttaagggacgaaaataacaattaagcc 35055333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 294 - 406
Target Start/End: Complemental strand, 701745 - 701633
Alignment:
Q  294 gaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaa 393  Q
    |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  701745 gaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaataagttaagggacgaaaa 701646  T
Q  394 tagcaattaagcc 406  Q
    |||||||||||||    
T  701645 tagcaattaagcc 701633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 294 - 406
Target Start/End: Complemental strand, 770044 - 769932
Alignment:
Q  294 gaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaa 393  Q
    |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  770044 gaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaataagttaagggacgaaaa 769945  T
Q  394 tagcaattaagcc 406  Q
    |||||||||||||    
T  769944 tagcaattaagcc 769932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 276 - 406
Target Start/End: Original strand, 757427 - 757557
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    ||||||||| ||||| |  || |||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  757427 aataaaattgacggaaggaactaatttatgtaacggagacatatttaaaggactcaaactgactttttattaattatgggaccaaagcgataccaaaaaa 757526  T
Q  376 ttagttaaggaacgaaaatagcaattaagcc 406  Q
    | |||||||| | ||||||||||||||||||    
T  757527 taagttaagggatgaaaatagcaattaagcc 757557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 315 - 406
Target Start/End: Complemental strand, 16038366 - 16038275
Alignment:
Q  315 catatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  16038366 catatttaaaggactcaaatggattttttattaattatgggaccaaagcgataccaaaaaattagttaagggacgaaaataacaattaagcc 16038275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 702033 - 702100
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  702033 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 702100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 757152 - 757085
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  757152 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 757085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 770332 - 770399
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  770332 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 770399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 336 - 406
Target Start/End: Original strand, 36220588 - 36220658
Alignment:
Q  336 aactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  36220588 aacttttttttagttatgggaccaaaacgataccaaaaaattagttaaggtactaaaatagcaattaagcc 36220658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 35055737 - 35055804
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||    
T  35055737 atgataaagggtttagatttggatttcatatgataaatgtaaaattttatctgatgagttttgttgtt 35055804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 11038646 - 11038577
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||||    
T  11038646 acttttttttagttatgggaccaaagcaataccaaaaaattagctaagggactaaaatagcaattaagcc 11038577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 16038664 - 16038731
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| ||||||||||||||||||||||  | ||| |||||||||||| |||||||||||||||||    
T  16038664 atgataaagggtttagatttggatttcatataagaaatgtaaagttttatctgatgagttttgttgtt 16038731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 51645963 - 51646029
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||| ||| ||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||    
T  51645963 tttttttagttatgggaccaaaccgataccaaaaaattagctaagggactaaaatagcaattaagcc 51646029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 4890915 - 4890827
Alignment:
Q  318 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaa-aaattagttaaggaacgaaaatagcaattaagc 405  Q
    |||||||||||||||| |||| |||||||| |||| ||  ||||||||||| ||| ||| || |||||| |||||||||||||||||||    
T  4890915 atttaaaggactcaaacaaaccttttattacttataggggcaaagcgatactaaagaaactacttaagggacgaaaatagcaattaagc 4890827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 36219473 - 36219408
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 405  Q
    |||| ||| ||||||||||||| ||||||  ||||||||||||||| || ||||||||||||||||    
T  36219473 tttttttagttatgggaccaaaccgatactcaaaaattagttaagggactaaaatagcaattaagc 36219408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 40681491 - 40681559
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||||||||||||| ||| | |||||| ||||||| ||||||||||||    
T  40681491 cttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaagcc 40681559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 31488056 - 31487978
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||| |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  31488056 ctcaaataatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 31487978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 405
Target Start/End: Original strand, 1098376 - 1098453
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 405  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || |||||||||||| |||| |||| ||||||    
T  1098376 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaagagcatttaagc 1098453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 16039437 - 16039474
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaagtttt 106  Q
    |||||||||||||||||||| |||||||||||||||||    
T  16039437 gtttagatttggatttcatatgataaaggtaaagtttt 16039474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 35060215 - 35060252
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaagtttt 106  Q
    |||||||||||||||||||| |||||||||||||||||    
T  35060215 gtttagatttggatttcatatgataaaggtaaagtttt 35060252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 406
Target Start/End: Original strand, 4892081 - 4892169
Alignment:
Q  318 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||||| | |  |||||||| ||||| |||| ||||||||| ||||||  | |||||| | ||||||||||||||||||    
T  4892081 atttaagggactcaaacagatcttttattacttatgcgacctaagcgatactaaaaaaaaacttaagggatgaaaatagcaattaagcc 4892169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 51399285 - 51399237
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaagg 385  Q
    ||||||||||| |||||||||||||||||||||||| || || ||||||    
T  51399285 actttttattacttatgggaccaaagcgataccaaataaatatttaagg 51399237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 33075036 - 33075071
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaa 199  Q
    |||||||||||||||||||||| |||||||||||||    
T  33075036 atgaaggttttatgaagatttgatgaagaagatgaa 33075071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 406
Target Start/End: Complemental strand, 41845568 - 41845501
Alignment:
Q  339 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| ||| ||| |||||||||||||||||||  |||||||||||| || |||| |||| |||||||    
T  41845568 ttttttttagttaagggaccaaagcgataccaattaattagttaagggaccaaaagagcatttaagcc 41845501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 1098131 - 1098053
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  1098131 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 1098053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 14525909 - 14525995
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| |  |||| |||| |||||||    
T  14525909 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggatcaaaagagcatttaagcc 14525995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 17475475 - 17475397
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  17475475 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 17475397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 17475863 - 17475941
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  17475863 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 17475941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 20614596 - 20614674
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  20614596 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 20614674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 22679719 - 22679633
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| || |||||| ||| ||| ||||| |||||||||||||  || ||||||||| || |||| |||| |||||||    
T  22679719 ttaaagtactcaaacaatcttttttttagttaagggactaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 22679633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 25618514 - 25618436
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  25618514 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 25618436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 41610205 - 41610127
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  41610205 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 41610127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 42369489 - 42369567
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  42369489 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 42369567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 53595070 - 53594984
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || |||| | || ||||| ||| |||||||    
T  53595070 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaaaggaccaaaatggcatttaagcc 53594984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 56271196 - 56271274
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  56271196 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 56271274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 402
Target Start/End: Original strand, 50551403 - 50551468
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaatta 402  Q
    ||||||| ||| |||||| || ||| |||||||||||||||| |||||| || |||||| ||||||    
T  50551403 acttttttttagttatggaactaaaccgataccaaaaaattaattaagggactaaaataacaatta 50551468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 702411 - 702443
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaa 101  Q
    |||||||||||||||||||| ||||||||||||    
T  702411 gtttagatttggatttcatatgataaaggtaaa 702443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 756791 - 756759
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaa 101  Q
    |||||||||||||||||||| ||||||||||||    
T  756791 gtttagatttggatttcatatgataaaggtaaa 756759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 770710 - 770742
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaa 101  Q
    |||||||||||||||||||| ||||||||||||    
T  770710 gtttagatttggatttcatatgataaaggtaaa 770742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 9086354 - 9086290
Alignment:
Q  339 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 403  Q
    ||||| ||| ||| |||||||||||||||||||| ||| | |||||| ||||||| || ||||||    
T  9086354 ttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagaaattaa 9086290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 11039740 - 11039788
Alignment:
Q  358 caaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| ||||||||||||||||||||   || |||||||||||||||||    
T  11039740 caaagtgataccaaaaaattagttaaatgactaaaatagcaattaagcc 11039788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 167; Significance: 3e-89; HSPs: 6)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 164 - 406
Target Start/End: Complemental strand, 123665 - 123424
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  123665 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 123566  T
Q  264 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 363  Q
    |||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  123565 aac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggactcaagcggactttttattaattatgggaccaaagc 123467  T
Q  364 gataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
     ||||||| ||||||||||||| ||||||||||||||||||||    
T  123466 aataccaagaaattagttaagggacgaaaatagcaattaagcc 123424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 164 - 406
Target Start/End: Complemental strand, 134541 - 134300
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134541 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 134442  T
Q  264 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 363  Q
    |||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  134441 aac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggactcaagcggactttttattaattatgggaccaaagc 134343  T
Q  364 gataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
     ||||||| ||||||||||||| ||||||||||||||||||||    
T  134342 aataccaagaaattagttaagggacgaaaatagcaattaagcc 134300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 276 - 406
Target Start/End: Original strand, 129347 - 129477
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    ||||||||| ||||| | |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||    
T  129347 aataaaattgacggaagggaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagtgataccaaaaaa 129446  T
Q  376 ttagttaaggaacgaaaatagcaattaagcc 406  Q
    | |||||||| ||||||||| ||||||||||    
T  129447 taagttaagggacgaaaataacaattaagcc 129477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 129059 - 128992
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  129059 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 128992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 123726 - 123694
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaa 101  Q
    |||||||||||||||||||| ||||||||||||    
T  123726 gtttagatttggatttcatatgataaaggtaaa 123694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 134597 - 134565
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaa 101  Q
    |||||||||||||||||||| ||||||||||||    
T  134597 gtttagatttggatttcatatgataaaggtaaa 134565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 164 - 406
Target Start/End: Original strand, 51599250 - 51599491
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51599250 atgaaggttttatgaagatttgttgaagaagatgaaggtgagttggaagaagatgaatataaattccaaccaatgcgaaaatgacatgtgtgcttgagtt 51599349  T
Q  264 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 363  Q
    ||||        ||||||||||||||| | |||||||||||||||   |||||||||||||| |||||||   |||||||||||||||| ||| ||||||    
T  51599350 aacg-tttttttaataaaattaacggaagggaccaatttatgtaacgaagacatatttaaagaactcaaacggactttttattaattataggatcaaagc 51599448  T
Q  364 gataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  51599449 gataccaaaaaattagttaagggacgaaaatagcaattaagcc 51599491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 212 - 406
Target Start/End: Complemental strand, 16962203 - 16962010
Alignment:
Q  212 gaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaag 311  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||         ||||||||||||||| | |||||||||||||||       
T  16962203 gaagatgaatataaattccaaccaatgcgaaaatgacatgtgtgcttgagttaac-atttttttaataaaattaacggaagggaccaatttatgtaacga 16962105  T
Q  312 agacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||||    
T  16962104 agacatatttaaaggactcaaacagactttttattaattataggaccaaagcaataccaaaaaattagttaagggacaaaaatagcaattaagcc 16962010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 276 - 406
Target Start/End: Original strand, 16963354 - 16963484
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    ||||||||| ||||| | ||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  16963354 aataaaattgacggaagggaccagtttatgtaacggagacatatttaaaggactcaaatgaactttttattaattatgagaccaaatcgataccaaaaaa 16963453  T
Q  376 ttagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||| ||||||||||    
T  16963454 ttagttaaggaacgaaaataacaattaagcc 16963484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 276 - 406
Target Start/End: Complemental strand, 51598091 - 51597961
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    ||||||||| ||||| | |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  51598091 aataaaattgacggaagggaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaa 51597992  T
Q  376 ttagttaaggaacgaaaatagcaattaagcc 406  Q
    | |||||||| ||||||||||||||||||||    
T  51597991 taagttaagggacgaaaatagcaattaagcc 51597961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 51598362 - 51598429
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  51598362 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 51598429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 16963066 - 16962999
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  16963066 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatctgatgagttttgttgtt 16962999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 46015846 - 46015915
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| ||| |||||||||||||||||||||||||||||| |||||| || |||||| ||||||||||    
T  46015846 acttttttttagttatgggaccaaagcgataccaaaaaattacttaagggactaaaataacaattaagcc 46015915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 50682580 - 50682644
Alignment:
Q  341 tttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 405  Q
    ||||||| ||||||||||||||||||||||||||| || |||||| || ||||||||||||||||    
T  50682580 tttattatttatgggaccaaagcgataccaaaaaaataattaagggaccaaaatagcaattaagc 50682644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 33333404 - 33333467
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 403  Q
    |||| |||||||||||||||||  |||||||||||||||||||||| || ||||||||||||||    
T  33333404 tttttttaattatgggaccaaactgataccaaaaaattagttaagggactaaaatagcaattaa 33333467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 6241314 - 6241253
Alignment:
Q  345 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| |||||||||||||||| ||| || |||||||||||||||||||| |||||||||    
T  6241314 ttaattaagggaccaaagcgatactaaataaatagttaaggaacgaaaatagaaattaagcc 6241253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 24326667 - 24326582
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| |||||||||| |||||| ||| ||| |||||||||||||||||||| || ||||||||| || |||| |||| |||||||    
T  24326667 taaagtactcaaataatcttttttttagttaagggaccaaagcgataccaaataaatagttaagggaccaaaagagcatttaagcc 24326582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 24332287 - 24332372
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| |||||||||| |||||| ||| ||| |||||||||||||||||||| || ||||||| | || |||| |||| |||||||    
T  24332287 taaagtactcaaataatcttttttttagttaagggaccaaagcgataccaaataaatagttaaaggaccaaaagagcatttaagcc 24332372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 46014770 - 46014701
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| ||| |||||||| | ||||||||||||||||||||||||   || |||||||||||||||||    
T  46014770 acttttttttagttatgggatcgaagcgataccaaaaaattagttaaatgactaaaatagcaattaagcc 46014701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 15073917 - 15073985
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||||||||||||  || |||||||||||| ||||||||| |||||||    
T  15073917 cttttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaatagcatttaagcc 15073985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 406
Target Start/End: Original strand, 47113097 - 47113172
Alignment:
Q  331 aaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| |||||| ||| ||| |||| ||||||||||||||| ||| | |||||| ||||||| ||||||||||||    
T  47113097 aaataatcttttttttacttaagggatcaaagcgataccaaataataacttaagggacgaaaagagcaattaagcc 47113172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 6714683 - 6714761
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  6714683 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 6714761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 33332243 - 33332177
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||| ||| ||||||||||||| |||||||||| || ||||||||  || |||||||||||||||||    
T  33332243 tttttttagttatgggaccaaaccgataccaaacaactagttaagagactaaaatagcaattaagcc 33332177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 6242694 - 6242755
Alignment:
Q  345 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| |||||||||||||||| ||  |||||||||||| | ||||||| ||||||||||    
T  6242694 ttaattaagggaccaaagcgatactaattaattagttaagggatgaaaatatcaattaagcc 6242755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 29021667 - 29021603
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 385  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || |||||||||    
T  29021667 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatagttaagg 29021603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 36143125 - 36143193
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| ||||||||| |||||||||| ||| | |||||| ||||||| ||||||||||||    
T  36143125 cttttttttacttaagggaccaaatcgataccaaataataacttaagggacgaaaagagcaattaagcc 36143193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 52750247 - 52750175
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaa 393  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || ||||| |||||| ||||    
T  52750247 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatagttgaggaaccaaaa 52750175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 406
Target Start/End: Complemental strand, 7964180 - 7964113
Alignment:
Q  339 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| ||| ||| |||||||||||||||||||| || ||||||||| || |||| |||| |||||||    
T  7964180 ttttttttagttaagggaccaaagcgataccaaataaatagttaagggaccaaaagagcatttaagcc 7964113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 31697200 - 31697117
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 404  Q
    ||||| ||||||||||  ||||| ||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||    
T  31697200 taaagtactcaaataattttttttttagttaagggaccaaagcgataccaaataaatatttaagggaccaaaagagcatttaag 31697117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 3798402 - 3798324
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  3798402 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 3798324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 3798690 - 3798768
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  3798690 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 3798768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 5804779 - 5804693
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| || |||||| ||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  5804779 ttaaagtactgaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 5804693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 6328302 - 6328388
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| || |||||| ||| ||| |||||||||||||||||||  || || |||||| || |||| ||||||||||||    
T  6328302 ttaaagtactgaaacaatcttttttttagttaagggaccaaagcgataccaattaaatacttaagggaccaaaagagcaattaagcc 6328388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 10719422 - 10719356
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| |||||||||||||||||||| ||| || || |||||| || |||| |||| |||||||    
T  10719422 ttttattatttatgggaccaaagcgatactaaataaatacttaagggaccaaaagagcatttaagcc 10719356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 10719625 - 10719691
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| |||||| ||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  10719625 ttttattacttatggaaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 10719691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 14244244 - 14244166
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| ||||||||||||||| |||  || |||||||||||| |||| |||| |||||||    
T  14244244 ctcaaacaatcttttttttagttaagggaccaaagcgatatcaattaaatagttaaggaaccaaaagagcatttaagcc 14244166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 14244540 - 14244618
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  14244540 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 14244618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 24370193 - 24370115
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  24370193 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 24370115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 35368941 - 35368856
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| ||| ||||| ||||||| |||||||||||||||||||  || || |||||| || |||| |||| |||||||    
T  35368941 ttaaagtactcaaacaaatttttt-ttaattaagggaccaaagcgataccaattaaatatttaagggaccaaaagagcatttaagcc 35368856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 37483132 - 37483054
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  37483132 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 37483054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 37708270 - 37708192
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || || ||||||||| |||| |||| |||||||    
T  37708270 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaataattaaggaaccaaaagagcatttaagcc 37708192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 38979749 - 38979671
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  38979749 ctcaaacaatcttttttttagttaagggaccaaagcgataccaatgaaatagttaagggaccaaaagagcatttaagcc 38979671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 38980034 - 38980112
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  38980034 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 38980112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 44114498 - 44114576
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  44114498 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 44114576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 46448721 - 46448799
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  46448721 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggactaaaagagcatttaagcc 46448799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 50138573 - 50138495
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  50138573 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 50138495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 50227894 - 50227972
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  50227894 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 50227972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 32193987 - 32194052
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 405  Q
    |||| ||| ||| |||||||||||||||||||  || |||||||||||| |||| |||| ||||||    
T  32193987 tttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaagagcatttaagc 32194052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 46448295 - 46448218
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 405  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| ||||||    
T  46448295 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagc 46448218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 13834777 - 13834713
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 404  Q
    ||||| |||||| ||||||||| ||| || ||||||| ||||||||||| |||| || |||||||    
T  13834777 ttttaataattaagggaccaaaacgaaacaaaaaaataagttaaggaaccaaaagagtaattaag 13834713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 29022522 - 29022594
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaa 393  Q
    ||||| ||| ||| || |||||| ||| ||| |||||||||| ||||||||| || |||||||||||| ||||    
T  29022522 taaagtacttaaacaatcttttttttagttaagggaccaaagtgataccaaataaatagttaaggaaccaaaa 29022594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 32193585 - 32193517
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| |||||||||||||||||||  || ||||||||| |  |||| |||| |||||||    
T  32193585 cttttttttaattaagggaccaaagcgataccaattaaatagttaagggattaaaagagcatttaagcc 32193517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 35369322 - 35369390
Alignment:
Q  327 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaata 395  Q
    ||||||| || |||||||||||||| |||| |||||||||| |||  || || ||||||||| ||||||    
T  35369322 actcaaacaatctttttattaattaagggatcaaagcgatatcaattaaatacttaaggaaccaaaata 35369390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 45678780 - 45678712
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  45678780 cttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 45678712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 51599192 - 51599224
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaa 101  Q
    |||||||||||||||||||| ||||||||||||    
T  51599192 gtttagatttggatttcatatgataaaggtaaa 51599224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 9e-80; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 175 - 405
Target Start/End: Complemental strand, 21816139 - 21815909
Alignment:
Q  175 atgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnn 274  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||           
T  21816139 atgaagatttgttgaagaagatgaaggcgaggaggaagaagatgaatataaattccaaccaatgcaaaaatgacacgtgtgcttgagttaacgttttttt 21816040  T
Q  275 naataaaattaacggatgagaccaatttatgtaaaagagacatatttaaagg-actcaaataaactttttattaattatgggaccaaagcgataccaaaa 373  Q
     ||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||   |||||||||||||||||| ||||||||||||| ||||    
T  21816039 -aataaaattaacggaagggaccaatttatgtaacagagacatatttaaagggactcaaacggactttttattaattatggaaccaaagcgatactaaaa 21815941  T
Q  374 aattagttaaggaacgaaaatagcaattaagc 405  Q
    |||||||||||| |||||||||||||||||||    
T  21815940 aattagttaagggacgaaaatagcaattaagc 21815909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 276 - 405
Target Start/End: Original strand, 21817328 - 21817457
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    ||||||||||||||| | ||| || |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  21817328 aataaaattaacggaagggactaagttatgtaacagagacatatttaaaggactcaaacagactttttattaattatgggaccaaagcgataccaaaaaa 21817427  T
Q  376 ttagttaaggaacgaaaatagcaattaagc 405  Q
    |||||||||| | |||||||| ||||||||    
T  21817428 ttagttaagggatgaaaatagtaattaagc 21817457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 406
Target Start/End: Original strand, 14859103 - 14859191
Alignment:
Q  318 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| |||||||||| ||||||||||| |||||| ||||||||||||| |||||| || |||||| | ||||||||||||||||||    
T  14859103 atttaaatgactcaaatagactttttattacttatggaaccaaagcgatactaaaaaaatatttaagggaagaaaatagcaattaagcc 14859191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 27688555 - 27688486
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| ||| ||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||    
T  27688555 acttttttttagttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcc 27688486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 39992484 - 39992552
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||||||||| |||| |||||||||||||||||||||| || ||||||| |||||||||    
T  39992484 cttttttttaattatgggacaaaagtgataccaaaaaattagttaagggactaaaatagtaattaagcc 39992552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 20184505 - 20184448
Alignment:
Q  349 ttatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||    
T  20184505 ttatgggaccaaaccgataccaaaaaattagttaagggactaaaataacaattaagcc 20184448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 27695576 - 27695633
Alignment:
Q  349 ttatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||    
T  27695576 ttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcc 27695633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 404
Target Start/End: Complemental strand, 39991572 - 39991507
Alignment:
Q  339 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 404  Q
    ||||| ||| |||||||| |||| ||||| |||||||||||||||||||| |||||| ||||||||    
T  39991572 ttttttttagttatgggatcaaaacgatatcaaaaaattagttaaggaactaaaataacaattaag 39991507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 32304300 - 32304232
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||||||||||||| ||| | |||||| ||||||| ||||||||||||    
T  32304300 cttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaagcc 32304232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 20185800 - 20185871
Alignment:
Q  335 aaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||| ||| |||||||| |||| |||||| |||||||||| ||| | || |||||||||||||||||    
T  20185800 aaacttttttttagttatgggatcaaaccgatacaaaaaaattaggtaatggactaaaatagcaattaagcc 20185871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 406
Target Start/End: Original strand, 40503711 - 40503790
Alignment:
Q  327 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| ||||||||||||    
T  40503711 actcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcaattaagcc 40503790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 43464878 - 43464812
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| |||||||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  43464878 ttttattacttatgggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 43464812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 45940660 - 45940738
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || ||||||||| |||||||    
T  45940660 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 45940738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 36982735 - 36982651
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||| ||  |||||  | |||||| |||||||||| |||| ||||    
T  36982735 taaaggactcaaacagactttttattacttatgggaccaaagcgacacttaaaaa-aaattaagggacgaaaatagaaattgagcc 36982651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 37008174 - 37008090
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||| ||  |||||  | |||||| |||||||||| |||| ||||    
T  37008174 taaaggactcaaacagactttttattacttatgggaccaaagcgacacttaaaaa-aaattaagggacgaaaatagaaattgagcc 37008090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 36982972 - 36982928
Alignment:
Q  76 tttggatttcataagataaaggtaaagttttatttgatgagtttt 120  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||    
T  36982972 tttgaatttcatatgataaaggtaaaattttatttgatgagtttt 36982928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 37008411 - 37008367
Alignment:
Q  76 tttggatttcataagataaaggtaaagttttatttgatgagtttt 120  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||    
T  37008411 tttgaatttcatatgataaaggtaaaattttatttgatgagtttt 37008367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 49221574 - 49221510
Alignment:
Q  339 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 403  Q
    ||||| ||| ||||||||| ||  ||||||||||||||||||||||| || |||||| |||||||    
T  49221574 ttttttttagttatgggactaacccgataccaaaaaattagttaagggacaaaaataacaattaa 49221510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 402
Target Start/End: Original strand, 27990252 - 27990326
Alignment:
Q  327 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaatta 402  Q
    |||||||||| |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| ||||||||    
T  27990252 actcaaataatcttttt-ttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcaatta 27990326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 28919175 - 28919124
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaa 371  Q
    |||||| ||||||| || |||||| ||||||| |||||||||||||||||||    
T  28919175 ttaaagtactcaaacaatcttttttttaattaagggaccaaagcgataccaa 28919124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 36982891 - 36982856
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaa 199  Q
    |||||||||||||||||||||| |||||||||||||    
T  36982891 atgaaggttttatgaagatttgatgaagaagatgaa 36982856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 37008330 - 37008295
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaa 199  Q
    |||||||||||||||||||||| |||||||||||||    
T  37008330 atgaaggttttatgaagatttgatgaagaagatgaa 37008295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 12740042 - 12739964
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  12740042 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 12739964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 13301948 - 13302014
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  13301948 ttttattacttacgggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 13302014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 13312604 - 13312670
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  13312604 ttttattacttacgggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 13312670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 13355253 - 13355175
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| | || |||||||    
T  13355253 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaatagttaagggactaaaagaacatttaagcc 13355175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 21816215 - 21816177
Alignment:
Q  92 taaaggtaaagttttatttgatgagttttgttgtttaag 130  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  21816215 taaaggtaaagttttttttgatgaattttgttgtttaag 21816177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 24242977 - 24243055
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  24242977 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 24243055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 24244765 - 24244831
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| |||||| | ||||||||||||||| || || |||||| || ||||||||| |||||||    
T  24244765 ttttattacttatggtatcaaagcgataccaaataaatacttaagggaccaaaatagcatttaagcc 24244831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 398
Target Start/End: Complemental strand, 50530703 - 50530625
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagca 398  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || || |||||| || |||||||||    
T  50530703 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatacttaagggactaaaatagca 50530625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 406
Target Start/End: Original strand, 52857273 - 52857343
Alignment:
Q  336 aactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| ||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  52857273 aacttttttttatttaagggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 52857343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 385
Target Start/End: Complemental strand, 54831934 - 54831876
Alignment:
Q  327 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 385  Q
    ||||||| || |||||| ||| ||| |||||||||||||||||||| || |||||||||    
T  54831934 actcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatagttaagg 54831876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 406
Target Start/End: Original strand, 12740335 - 12740412
Alignment:
Q  329 tcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| |||| | ||| ||| ||||||| |||||||||||  || || |||||||||||||| |||| |||||||    
T  12740335 tcaaataatctttcttttagttaagggaccatagcgataccaattaaataattaaggaacgaaaagagcatttaagcc 12740412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 17509517 - 17509464
Alignment:
Q  353 gggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||| ||| | |||||| ||||||| | ||||||||||    
T  17509517 gggaccaaagcgataccaaataataacttaagggacgaaaagaacaattaagcc 17509464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 36982867 - 36982826
Alignment:
Q  209 gaagaagatgaatataaattccaaccaatgcgaaaatgacac 250  Q
    |||||||||||||||| |||||| |||||||||| |||||||    
T  36982867 gaagaagatgaatatatattccagccaatgcgaagatgacac 36982826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 37008306 - 37008265
Alignment:
Q  209 gaagaagatgaatataaattccaaccaatgcgaaaatgacac 250  Q
    |||||||||||||||| |||||| |||||||||| |||||||    
T  37008306 gaagaagatgaatatatattccagccaatgcgaagatgacac 37008265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 39198495 - 39198418
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 405  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || || |||||| || ||||||| | ||||||    
T  39198495 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaataattaagggaccaaaatagtatttaagc 39198418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 42540216 - 42540163
Alignment:
Q  353 gggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||| ||| | |||||| ||||||| || |||||||||    
T  42540216 gggaccaaagcgataccaaataataacttaagggacgaaaagagtaattaagcc 42540163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 4953405 - 4953457
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaa 372  Q
    |||| ||||| ||| | ||||||||||| ||||||||||||| ||||||||||    
T  4953405 ttaagggacttaaacagactttttattacttatgggaccaaaacgataccaaa 4953457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 45940283 - 45940215
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  45940283 cttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 45940215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 9e-74; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 178 - 406
Target Start/End: Complemental strand, 21709386 - 21709158
Alignment:
Q  178 aagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaa 277  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||        ||    
T  21709386 aagatttgttgaaaaagatgaaggtgagttggaagaagatgaatataaattctaaccaatgcaaaaatgacacgtgtgcttgagttaacgttttttttaa 21709287  T
Q  278 taaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaatt 377  Q
    ||||||||||||| | |||||||||||||||   |||||||||||||||||| |||   |||||||||||||||||||||||||||||||| ||||||||    
T  21709286 taaaattaacggaagggaccaatttatgtaacgaagacatatttaaaggacttaaacggactttttattaattatgggaccaaagcgatactaaaaaatt 21709187  T
Q  378 agttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| ||||||||||||||||||||    
T  21709186 agttaagggacgaaaatagcaattaagcc 21709158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 209 - 406
Target Start/End: Original strand, 26025728 - 26025924
Alignment:
Q  209 gaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||| |||||||||||||||||    
T  26025728 gaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaac-atttttttaataaaattaacggaagagaccaatttatgtaa 26025826  T
Q  309 aagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
      ||||||||||||||||||||||    |||||||||||||||||| | |||||| ||||||| ||||||||||| | || |||||||||||||||||    
T  26025827 cggagacatatttaaaggactcaagcggactttttattaattatggaatcaaagcaataccaagaaattagttaaaggacaaaaatagcaattaagcc 26025924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 276 - 405
Target Start/End: Complemental strand, 26025017 - 26024888
Alignment:
Q  276 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 375  Q
    ||||||||| ||||| | |||||||||||||||  ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  26025017 aataaaattgacggaagggaccaatttatgtaacggagacatatttaaaggactcaaacagactttttattaattatgggaccaaagcgataccaaaaaa 26024918  T
Q  376 ttagttaaggaacgaaaatagcaattaagc 405  Q
    | |||||||| ||||| |||||||||||||    
T  26024917 taagttaagggacgaagatagcaattaagc 26024888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 294 - 406
Target Start/End: Original strand, 21710547 - 21710659
Alignment:
Q  294 gaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaa 393  Q
    |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||    
T  21710547 gaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaataagttaagggacaaaaa 21710646  T
Q  394 tagcaattaagcc 406  Q
    || ||||| ||||    
T  21710647 tatcaattcagcc 21710659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 26025287 - 26025354
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  26025287 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 26025354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 21710259 - 21710193
Alignment:
Q  59 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 126  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||    
T  21710259 atgataaagggtttagatttggatttcatatgataaatgtaaagtttt-tttgatgtgttttgttgtt 21710193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 404
Target Start/End: Original strand, 10990568 - 10990654
Alignment:
Q  318 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 404  Q
    |||||||||||||||| | ||||||||||| |||||||| ||||||||||| |||||| ||  ||||  |||||||||| |||||||    
T  10990568 atttaaaggactcaaacagactttttattacttatgggatcaaagcgatactaaaaaaatacataagagacgaaaatagtaattaag 10990654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 406
Target Start/End: Complemental strand, 10986775 - 10986695
Alignment:
Q  326 gactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||| ||| ||||||||||| |||||| ||| |||| ||||||||||||| ||||||||| ||||||| || |||||||||    
T  10986775 gacttaaacaaactttttatcaattataggagcaaaacgataccaaaaaaatagttaagggacgaaaagagaaattaagcc 10986695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 45088244 - 45088310
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||| ||| |||||||||||||  ||||||||| |||||||||||| || |||||||||||||||||    
T  45088244 tttttttagttatgggaccaaactgataccaaacaattagttaagggactaaaatagcaattaagcc 45088310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 40738254 - 40738193
Alignment:
Q  345 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| |||||||||||||||| ||  |||||||| ||| ||||||||||||||||||||    
T  40738254 ttaattaagggaccaaagcgatactaattaattagttgagggacgaaaatagcaattaagcc 40738193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 45087131 - 45087067
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 404  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||| | || |||||| ||||||||    
T  45087131 tttttttagttatgggaccaaaccgataccaaaaaattagttaaaggactaaaataacaattaag 45087067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 19543551 - 19543492
Alignment:
Q  345 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 404  Q
    ||||||| |||| ||||||||||| ||| || ||||||||| ||||||||||||||||||    
T  19543551 ttaattaagggatcaaagcgatactaaataaatagttaagggacgaaaatagcaattaag 19543492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 26025704 - 26025739
Alignment:
Q  164 atgaaggttttatgaagatttgttgaagaagatgaa 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  26025704 atgaaggttttatgaagatttgttgaagaagatgaa 26025739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 3217734 - 3217812
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||| |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  3217734 ctcaaataatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 3217812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 45457084 - 45457162
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  45457084 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 45457162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 14682973 - 14683030
Alignment:
Q  327 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaag 384  Q
    |||||||||| |||||| ||| ||| |||||||||||||||||||| || ||||||||    
T  14682973 actcaaataatcttttttttagttaagggaccaaagcgataccaaataaatagttaag 14683030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 30766674 - 30766742
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||| ||||||||| ||| | |||||| ||||||| ||||||||||||    
T  30766674 cttttttttacttaagggaccaaagtgataccaaataataacttaagggacgaaaaaagcaattaagcc 30766742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 403
Target Start/End: Complemental strand, 38030413 - 38030332
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 403  Q
    |||||||| | ||||| ||||||||||| |||||||| ||||||||||| ||||||  |  ||||| |||||||||| ||||||    
T  38030413 ttaaaggattgaaatagactttttattacttatgggatcaaagcgatactaaaaaa--acgtaagggacgaaaatagaaattaa 38030332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 26041802 - 26041873
Alignment:
Q  335 aaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||| |||||||| |||| ||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  26041802 aaaccttttattacttataggaccaaagcgataccaaataaatatttaagggaccaaaagagcatttaagcc 26041873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 406
Target Start/End: Complemental strand, 43705012 - 43704945
Alignment:
Q  339 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  43705012 ttttttttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaaaagcatttaagcc 43704945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 7776937 - 7777015
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  7776937 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 7777015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 27284320 - 27284242
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  27284320 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 27284242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 27284589 - 27284667
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  27284589 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 27284667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 31852062 - 31852140
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  31852062 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 31852140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 36951134 - 36951056
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||| |||||| ||| ||| || ||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  36951134 ctcaaataatcttttttttagttaaggaaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 36951056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 39143491 - 39143569
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  39143491 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 39143569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 40852140 - 40852218
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  40852140 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 40852218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 45456812 - 45456734
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  45456812 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 45456734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 404
Target Start/End: Complemental strand, 42287378 - 42287313
Alignment:
Q  339 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 404  Q
    ||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||    
T  42287378 tttttcttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaag 42287313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 21709447 - 21709415
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaa 101  Q
    |||||||||||||||||||| ||||||||||||    
T  21709447 gtttagatttggatttcatatgataaaggtaaa 21709415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 23440909 - 23440977
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||||||||||||  || |||||||||||  |||| |||| |||||||    
T  23440909 cttttttttagttaagggaccaaagcgataccaattaaatagttaaggaatcaaaagagcatttaagcc 23440977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 26025648 - 26025680
Alignment:
Q  69 gtttagatttggatttcataagataaaggtaaa 101  Q
    |||||||||||||||||||| ||||||||||||    
T  26025648 gtttagatttggatttcatatgataaaggtaaa 26025680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 37374447 - 37374515
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  37374447 cttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 37374515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 47987395 - 47987327
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  47987395 cttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 47987327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 36889719 - 36889805
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  36889719 ttaaaggattcaaatagactttttattaattatgggaccaaaccgataccaaaaaattagttaagggactaaaatagcaattaagcc 36889805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 36888424 - 36888338
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||    
T  36888424 ttaaaggactcaaacagactttttattagttatgggaccaaaccgataccaaaaaattagctaagggactaaaatagcaattaagcc 36888338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 350 - 406
Target Start/End: Complemental strand, 35738419 - 35738363
Alignment:
Q  350 tatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35738419 tatggaaccaaagcgataccaaaaaattagttaaggaacgaaaatagtaattaagcc 35738363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 7184949 - 7184881
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| |||||||| |||| ||||||||||||||||||||||  || |||||||||||||||||    
T  7184949 cttttttttagttatgggatcaaaccgataccaaaaaattagttaagagactaaaatagcaattaagcc 7184881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 34166914 - 34166843
Alignment:
Q  336 aactttttattaattatgggaccaaagcgataccaa-aaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||||| |||  |||||||| |||| || |||||| ||||||||||||||||||||    
T  34166914 aactttttattaattatgggacaaaactgataccaaaaaaaatatttaagggacgaaaatagcaattaagcc 34166843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 43820308 - 43820386
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || |||||||||||| ||||||||| |||||||    
T  43820308 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaatagcatttaagcc 43820386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 13809491 - 13809426
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 405  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||  | ||||||| ||||||||    
T  13809491 tttttttaattataggatcaaagcgataccaaaaaattagttaagggcctaaaatagaaattaagc 13809426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 13810569 - 13810636
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| ||| |||||||||||||||||||||  |||||||||||||  || ||||| |||||||||||    
T  13810569 acttttttttagttatgggaccaaagcgatacc--aaaattagttaagagactaaaattgcaattaagcc 13810636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 15044825 - 15044739
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| || |||||| ||| |||  ||||||||||||||||||  || ||||||||| || ||||||||| |||||||    
T  15044825 ttaaagtactcaaacaatcttttttttagttaaaggaccaaagcgataccaattaaatagttaagggaccaaaatagcacttaagcc 15044739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 26424804 - 26424882
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  26424804 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 26424882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 3603557 - 3603504
Alignment:
Q  353 gggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||| ||| || ||||||||| ||||||||| ||||||||||    
T  3603557 gggaccaaagcgatactaaataaatagttaagggacgaaaataacaattaagcc 3603504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 40468114 - 40468049
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 403  Q
    |||||| ||| ||| |||||||||||||||||||| ||| | |||||| ||||||| |||||||||    
T  40468114 cttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaa 40468049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 5381624 - 5381536
Alignment:
Q  318 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || || |||||| || |||| |||| |||||||    
T  5381624 atttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatacttaagggaccaaaagagcatttaagcc 5381536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 19297595 - 19297527
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| ||||||||| |||||||||| ||| | |||||| ||||||| ||||||||||||    
T  19297595 cttttttttacttaagggaccaaaacgataccaaataataacttaagggacgaaaagagcaattaagcc 19297527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 3607036 - 3607098
Alignment:
Q  345 ttaattatgggaccaaagcgataccaa--aaaattagttaaggaacgaaaatagcaattaagc 405  Q
    ||||||| || | ||||||||||| ||  ||||||| ||||||||||||||||||||||||||    
T  3607036 ttaattaaggaatcaaagcgatactaattaaaattaattaaggaacgaaaatagcaattaagc 3607098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 4602797 - 4602875
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  4602797 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 4602875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 385
Target Start/End: Complemental strand, 8885737 - 8885679
Alignment:
Q  327 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 385  Q
    |||||||||| |||||| ||| ||| |||||||||||||||||||| || || ||||||    
T  8885737 actcaaataatcttttttttagttaagggaccaaagcgataccaaataaatacttaagg 8885679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 20686669 - 20686735
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||| ||| ||| ||||||||||| |||||||| ||| | |||||| ||||||| ||||||||||||    
T  20686669 tttttttacttaagggaccaaagcaataccaaataataacttaagggacgaaaaaagcaattaagcc 20686735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 33200106 - 33200028
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||| | || ||||||||| |||||||    
T  33200106 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaaggaccaaaatagcatttaagcc 33200028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 34618502 - 34618580
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  34618502 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggactaaaagagcatttaagcc 34618580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 39109475 - 39109561
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || || | |||| |||||||    
T  39109475 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaatagagcatttaagcc 39109561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 8029019 - 8028966
Alignment:
Q  353 gggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||||||||||||||||| ||| | |||||  ||| ||||||||||||||||    
T  8029019 gggaccaaagcgataccaaataataacttaagagacggaaatagcaattaagcc 8028966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 38978912 - 38978961
Alignment:
Q  336 aactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 385  Q
    ||||||||||||  ||||||||||||||||||||||| || || ||||||    
T  38978912 aactttttattacatatgggaccaaagcgataccaaataaatatttaagg 38978961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 32194819 - 32194887
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  32194819 cttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 32194887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 71821 - 71887
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  71821 tttttttagttatgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 71887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 406
Target Start/End: Complemental strand, 70736 - 70669
Alignment:
Q  339 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  70736 ttttttttagttatgggaccaaaccgataccaaaaaattagttaagggactaaaatagcaattaagcc 70669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 14340 - 14270
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaa-ttagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||| ||| ||||||||||||| ||||||||||||| |||||||||| || |||||||||||||||||    
T  14340 acttttttttagttatgggaccaaaccgataccaaaaaaattagttaagggactaaaatagcaattaagcc 14270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 26049 - 25963
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||| ||||| ||| ||||||||||||| |||||||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  26049 ttaagggacttaaacaaactttttattacttatgggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 25963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 406
Target Start/End: Original strand, 19718881 - 19718948
Alignment:
Q  339 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| ||| |||| ||| |||||||||||||||||||||||||| | || |||||||||||||||||    
T  19718881 ttttttttagttataggatcaaagcgataccaaaaaattagttaaaggactaaaatagcaattaagcc 19718948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 25333161 - 25333246
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| ||||||| || |||||| |||||||  ||||||||||||||||||  || ||||||||| || ||||||||| |||||||    
T  25333161 taaagtactcaaacaatcttttttttaattaaaggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 25333246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 37192445 - 37192509
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 385  Q
    ||||| |||||||||| |||||| ||| ||| |||||||||||||||||||| || |||||||||    
T  37192445 taaagtactcaaataatcttttttttagttaagggaccaaagcgataccaaataaatagttaagg 37192509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 38384953 - 38384889
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 385  Q
    ||||| ||||||| || |||||| ||||||| |||||||||||||||||||| || |||||||||    
T  38384953 taaagtactcaaacaatcttttttttaattaagggaccaaagcgataccaaataaatagttaagg 38384889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 16669584 - 16669506
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  16669584 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaagagcatttaagcc 16669506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 30112682 - 30112768
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || || |||||| || |||| ||||||||||||    
T  30112682 ttaaagaactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatacttaagggactaaaagagcaattaagcc 30112768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 30645700 - 30645785
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  30645700 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 30645785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 35463861 - 35463909
Alignment:
Q  337 actttttattaattatgggaccaaagcgataccaaaaaattagttaagg 385  Q
    ||||||||||| |||||||||||||||||||||||| || || ||||||    
T  35463861 actttttattacttatgggaccaaagcgataccaaataaatatttaagg 35463909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 1983550 - 1983613
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 403  Q
    |||||||| |||||||||||||||||||| ||| || || ||||||||| |||| |||| ||||    
T  1983550 ttttattacttatgggaccaaagcgatactaaataaatacttaaggaaccaaaagagcatttaa 1983613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 435632 - 435554
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  435632 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 435554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 4959627 - 4959561
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||| ||| ||| |||||||||||||||||||  || ||||||||| || ||||||||| |||||||    
T  4959627 tttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 4959561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 16670008 - 16670086
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  16670008 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 16670086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 17339873 - 17339795
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  17339873 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaaaagcatttaagcc 17339795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 24100680 - 24100758
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  24100680 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 24100758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 27851023 - 27851101
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  27851023 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 27851101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 29962161 - 29962239
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  29962161 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 29962239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 30012637 - 30012559
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  30012637 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 30012559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 30645000 - 30644914
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| || |||||| ||| ||| ||||||| |||||||||||| || || |||||| || |||| |||| |||||||    
T  30645000 ttaaagtactcaaacaatcttttttttagttaagggaccatagcgataccaaataaatatttaagggaccaaaagagcatttaagcc 30644914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 38312403 - 38312325
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  38312403 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 38312325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 385
Target Start/End: Complemental strand, 42766896 - 42766838
Alignment:
Q  327 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 385  Q
    ||||||| || |||||| ||| ||| |||||||||||||||||||| || |||||||||    
T  42766896 actcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatagttaagg 42766838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 401
Target Start/End: Original strand, 9378728 - 9378785
Alignment:
Q  344 attaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaatt 401  Q
    |||||||||| |||||||| |||||||||||| ||||||| | || ||| ||||||||    
T  9378728 attaattatgcgaccaaagtgataccaaaaaaatagttaatggaccaaattagcaatt 9378785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 14662662 - 14662695
Alignment:
Q  339 tttttattaattatgggaccaaagcgataccaaa 372  Q
    ||||||||| ||||||||||||||||||||||||    
T  14662662 tttttattacttatgggaccaaagcgataccaaa 14662695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 24648582 - 24648615
Alignment:
Q  175 atgaagatttgttgaagaagatgaaggtgaggag 208  Q
    |||||||||||||||||| |||||||||||||||    
T  24648582 atgaagatttgttgaagatgatgaaggtgaggag 24648615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 37966875 - 37966814
Alignment:
Q  345 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    ||||||||||||||||||  |||| ||  || ||||||||| ||||||||| ||||||||||    
T  37966875 ttaattatgggaccaaagtaatactaattaaatagttaagggacgaaaataacaattaagcc 37966814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 6793835 - 6793767
Alignment:
Q  338 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||| ||| |||||||||| ||||||||| ||| | |||||| || |||| ||||||||||||    
T  6793835 cttttttttacttaagggaccaaagtgataccaaataataacttaagggacaaaaagagcaattaagcc 6793767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 37191678 - 37191614
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 385  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| ||  ||||||||    
T  37191678 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaacagttaagg 37191614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 42381268 - 42381204
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 404  Q
    ||||| || ||| ||||||||| ||| |||||||||| ||||||||||| |||| || |||||||    
T  42381268 ttttaatagttaagggaccaaaacgaaaccaaaaaataagttaaggaaccaaaagagtaattaag 42381204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 19237 - 19303
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||| ||| ||||||||||||| ||||| |||||||||||||||||||| ||| || ||||||||||    
T  19237 tttttttagttatgggaccaaaccgatatcaaaaaattagttaaggaactaaagtaacaattaagcc 19303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 18134 - 18070
Alignment:
Q  340 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 404  Q
    |||| ||| ||||| ||||||| ||||||  ||||||||||||||| || ||||||| |||||||    
T  18134 tttttttagttatgagaccaaaccgatactcaaaaattagttaagggactaaaatagtaattaag 18070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 57530 - 57616
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| | ||||||||||    
T  57530 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagaacaattaagcc 57616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 57107 - 57022
Alignment:
Q  320 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| | ||||||||||    
T  57107 ttaaagtactcaaacaatcttttt-ttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagaacaattaagcc 57022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 83366 - 83444
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || ||||||||| |||||||    
T  83366 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 83444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 12127 - 12061
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaa 387  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || ||||||||    
T  12127 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaaggaa 12061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 38967 - 38901
Alignment:
Q  321 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaa 387  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || ||||||||    
T  38967 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaaggaa 38901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 283154 - 283232
Alignment:
Q  328 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 406  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  283154 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 283232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 6233 - 6289
Alignment:
Q  345 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaatt 401  Q
    |||||||||||| ||||||||||| ||  || ||||||||  |||||||||||||||    
T  6233 ttaattatgggatcaaagcgatactaattaaatagttaagagacgaaaatagcaatt 6289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University