View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_low_8 (Length: 390)
Name: NF1553_low_8
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 141 - 373
Target Start/End: Complemental strand, 11164926 - 11164694
Alignment:
| Q |
141 |
aaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccattatcatcaccaga |
240 |
Q |
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| T |
11164926 |
aaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccattatcatcaccaga |
11164827 |
T |
|
| Q |
241 |
atcatcataatcatcctcataatcttcaacataatccaatcccttcgaacaagggacaacattagcatccacactaggaacaacattattatcaccaaca |
340 |
Q |
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| T |
11164826 |
atcatcataatcatcctcataatcttcaacacaatccaatccctccgaacaagtaacaacattagcatccacactaggaacaacattattatcaccaaca |
11164727 |
T |
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| Q |
341 |
ttaaccttaacattatcactactagtagaacct |
373 |
Q |
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| T |
11164726 |
ttaaccttaacattatcactactagtagaacct |
11164694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 133 - 332
Target Start/End: Complemental strand, 11157845 - 11157646
Alignment:
| Q |
133 |
ttgaattgaaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccattatca |
232 |
Q |
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| T |
11157845 |
ttgaattgaaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccattatca |
11157746 |
T |
|
| Q |
233 |
tcaccagaatcatcataatcatcctcataatcttcaacataatccaatcccttcgaacaagggacaacattagcatccacactaggaacaacattattat |
332 |
Q |
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| T |
11157745 |
tcaccagaatcatcataatcatcctcataatcttcaacacaatccaatccctccgaacaagtaacaacattaacatcaacactattatcaacattattat |
11157646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 11177602 - 11177563
Alignment:
| Q |
250 |
atcatcctcataatcttcaacataatccaatcccttcgaa |
289 |
Q |
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| T |
11177602 |
atcatcctcataattttcaacataatccaatccctccgaa |
11177563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 302
Target Start/End: Original strand, 4703324 - 4703448
Alignment:
| Q |
169 |
tcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccattatcatcaccagaatcatcataatcatcctcataatcttca |
268 |
Q |
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| T |
4703324 |
tcacattaacgattttagtgacctttctttcacgggtttcctcattctcctcttcccattatc---------atcatcatattcatcctcataatcttca |
4703414 |
T |
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| Q |
269 |
acataatccaatcccttcgaacaagggacaacat |
302 |
Q |
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| T |
4703415 |
aaataattcaatccctcagaacaaggaacaacat |
4703448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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