View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553_low_9 (Length: 322)
Name: NF1553_low_9
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 32596485 - 32596176
Alignment:
| Q |
1 |
tattctgttttatttcctttctcgggcttgtttttacctgaccaagtaaatagggtggcttgagtggtttcccttttgagtatgatgagaaggtaatgcc |
100 |
Q |
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|||||| ||||||||| ||||||| |||||||||||| ||||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
32596485 |
tattcttttttatttcttttctcgagcttgtttttacttgaccaattaaatagagtggctggagtggttacccttttgagtatgatgagaaggtaatgcc |
32596386 |
T |
|
| Q |
101 |
ctcattcacattattcattatcgttatgnnnnnnnnnnnnnnnnnnnnnnnnngatcaagttgggaatcccgggtttgagccccgctcctgcatatggca |
200 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32596385 |
ctcattcacattattcattatcgttatgttttttaacttatttatttatttttgatcaagtcgggaatcccgggtttgagccccgctcctgcatatggca |
32596286 |
T |
|
| Q |
201 |
ttgcaatgtccctaccaactgagctatgctcactagggctaatttatttatatcttcgtttgtagttgtaatatatgaatgattttgtttatgtgttcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32596285 |
ttgcaatgtccctaccaactgagctatgctcactagcgctaatttatttatatcttcgtttgtagttgtaatatatgaatgattttgtttatgtgttcaa |
32596186 |
T |
|
| Q |
301 |
ttttggtctg |
310 |
Q |
| |
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|||||||||| |
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| T |
32596185 |
ttttggtctg |
32596176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 16017086 - 16017120
Alignment:
| Q |
203 |
gcaatgtccctaccaactgagctatgctcactagg |
237 |
Q |
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| T |
16017086 |
gcaatgtccctaccaactgagctatgctcactagg |
16017120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 11133120 - 11133075
Alignment:
| Q |
188 |
cctgcatatggcattgcaatgtccctaccaactgagctatgctcac |
233 |
Q |
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||||||||| || |||| ||||||||||||||||||||||||||| |
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| T |
11133120 |
cctgcatataacaatgcattgtccctaccaactgagctatgctcac |
11133075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 23403334 - 23403306
Alignment:
| Q |
206 |
atgtccctaccaactgagctatgctcact |
234 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
23403334 |
atgtccctaccaactgagctatgctcact |
23403306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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