View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15540_high_13 (Length: 236)
Name: NF15540_high_13
Description: NF15540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15540_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 32738023 - 32738222
Alignment:
| Q |
21 |
acacaaatagtcttcaataatgaatgaacgttaaccctttcatcaaggtgcatgtgtctcaccttgaaagagagcttcattgattgtttgcaacaccaaa |
120 |
Q |
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| T |
32738023 |
acacaaatagtcttcaataatgaatgaacgataaccctttcatcaaggtgcatgtgtctcaccttgaaagagagcttcattgattgtttgcaacaccaaa |
32738122 |
T |
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| Q |
121 |
tggaacaaaaagacggggataacctcgacgctgatgaatgtttccggcgacattcatttctttcagagggcagtttgtgccaccacttccggggataaag |
220 |
Q |
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| T |
32738123 |
tggaacaaaaagacggggataacctcgacgctgatgaatgtttccggcgacattcatttctttcagagggcagtttgtgccaccacttccggggataaag |
32738222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 32740539 - 32740702
Alignment:
| Q |
21 |
acacaaatagtcttcaataatgaatgaacgttaaccctttcatcaaggtgcatgtgtctcaccttgaaagagagcttcattgattgtttgcaacaccaaa |
120 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32740539 |
acacaaatagtcttcaataatgaatgaaatttaaccctttcatcaaggtgcatgtgtctcaccttgaaagagatcttcattgattgtttgcaacaccaaa |
32740638 |
T |
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| Q |
121 |
tggaacaaaaagacggggataacctcgacgctgatgaatgtttccggcgacattcatttctttca |
185 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
32740639 |
tggaacaaaaagac-gggataacctcgacgctgatgagtgtttccggcgacattcatttccttca |
32740702 |
T |
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