View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15540_high_14 (Length: 223)

Name: NF15540_high_14
Description: NF15540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15540_high_14
NF15540_high_14
[»] chr1 (7 HSPs)
chr1 (1-207)||(24310019-24310225)
chr1 (1-201)||(24322304-24322510)
chr1 (72-207)||(24369399-24369534)
chr1 (29-195)||(24367026-24367189)
chr1 (10-114)||(24365193-24365297)
chr1 (79-195)||(24340337-24340450)
chr1 (79-195)||(24352702-24352815)
[»] chr3 (3 HSPs)
chr3 (16-125)||(47452022-47452131)
chr3 (150-207)||(11005980-11006037)
chr3 (150-207)||(11024555-11024612)
[»] chr4 (22 HSPs)
chr4 (65-125)||(48863129-48863189)
chr4 (4-117)||(45372192-45372305)
chr4 (32-117)||(48852530-48852615)
chr4 (29-117)||(50250913-50251001)
chr4 (151-190)||(7237767-7237806)
chr4 (151-190)||(7771396-7771435)
chr4 (151-190)||(7790081-7790120)
chr4 (29-116)||(48875710-48875797)
chr4 (153-195)||(7908325-7908367)
chr4 (150-195)||(37827024-37827069)
chr4 (4-117)||(48870381-48870494)
chr4 (4-117)||(48886067-48886180)
chr4 (150-195)||(50669052-50669097)
chr4 (151-195)||(7877727-7877771)
chr4 (150-185)||(7813474-7813509)
chr4 (150-185)||(7822963-7822998)
chr4 (66-207)||(49041191-49041330)
chr4 (79-117)||(48170703-48170741)
chr4 (29-115)||(50668916-50669002)
chr4 (144-181)||(7800625-7800662)
chr4 (150-207)||(48852663-48852720)
chr4 (150-206)||(50250809-50250865)
[»] chr5 (4 HSPs)
chr5 (145-190)||(29696198-29696243)
chr5 (79-115)||(29688025-29688061)
chr5 (145-188)||(179026-179069)
chr5 (145-187)||(29712513-29712555)
[»] chr8 (4 HSPs)
chr8 (150-197)||(12200304-12200351)
chr8 (150-197)||(12444732-12444779)
chr8 (153-207)||(12195300-12195354)
chr8 (153-207)||(12439728-12439782)
[»] chr6 (2 HSPs)
chr6 (150-190)||(21979682-21979722)
chr6 (31-117)||(21015672-21015758)
[»] chr7 (1 HSPs)
chr7 (150-195)||(48883798-48883843)
[»] scaffold0508 (1 HSPs)
scaffold0508 (4-52)||(12155-12203)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 24310019 - 24310225
Alignment:
Q  1 ctaaatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310019 ctaaatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagt 24310118  T
Q  101 tcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagttttagta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310119 tcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagttttagta 24310218  T
Q  201 tcctatg 207  Q
    |||||||    
T  24310219 tcctatg 24310225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 24322304 - 24322510
Alignment:
Q  1 ctaaatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatgg------aatccatccac 94  Q
    |||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||| |||||||||||||||| |||||      ||||||||| |    
T  24322304 ctaaatcttattttgatcttaaagttagaggttcatgtagagggtatatattgttggagtttttttcaaacatttacctatggaaatggaatccatcccc 24322403  T
Q  95 cggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagtt 194  Q
    | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||    
T  24322404 ccgagttcatagacaaataccttcgcctcctctcaactattcacgtttaaatttctctagttttggatatgacgagtcaagagaggattacttggtagtt 24322503  T
Q  195 ttagtat 201  Q
    |||||||    
T  24322504 ttagtat 24322510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 24369399 - 24369534
Alignment:
Q  72 atttacgtatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagt 171  Q
    |||||| |||||||| | || ||| | |||||||||||||||||||||| |||||| ||| |||||||||||  ||  ||||||||||| ||||||||||    
T  24369399 atttacttatggaatacgtctaccagggttcatagacaaataccttcgcttcctcctaatcattcacgtttaccttcttatggttttggctatgacgagt 24369498  T
Q  172 caagagatgattacttggtagttttagtatcctatg 207  Q
    ||| |||||||||| |||| |||| |||||||||||    
T  24369499 caacagatgattacctggtggtttcagtatcctatg 24369534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 24367026 - 24367189
Alignment:
Q  29 aggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaataccttcgcctcctccc 128  Q
    |||||||||| |||| |||||||||||| | | || ||||||||||||| ||||||| ||||||||| |||||||||| ||| |||||| ||||| |       
T  24367026 aggttcatgtcgagggtttatattgttgcactcttcttcaaacatttacctatggaacccatccaccagagttcataggcaattacctttgcctctt--- 24367122  T
Q  129 aattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagttt 195  Q
    ||| ||| |  |  | |||||||||||||||| |||||| |||||| ||||||||||||||| ||||    
T  24367123 aatcatttatatgcagatttctatggttttgggtatgacaagtcaacagatgattacttggtggttt 24367189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 24365193 - 24365297
Alignment:
Q  10 attttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagaca 109  Q
    |||||||||||||| ||||||||||||||||||| || ||||| ||| | | || | ||||| ||||  |||||||||||||||  ||||||||||| ||    
T  24365193 attttgatcttaaaattataggttcatgtagagggttcatatttttgtactcttatccaaacttttagctatggaatccatccaatggagttcataggca 24365292  T
Q  110 aatac 114  Q
    |||||    
T  24365293 aatac 24365297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 24340337 - 24340450
Alignment:
Q  79 tatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagaga 178  Q
    |||||||||||||||||||| ||| ||||||||||||||  ||||||   |||  ||||  ||||| ||| ||||||||||| |||||||| |||| | |    
T  24340337 tatggaatccatccaccggatttcttagacaaatacctttccctcct---aatgtttcaaatttaattttttatggttttgggtatgacgaatcaacata 24340433  T
Q  179 tgattacttggtagttt 195  Q
    |||||||||||| ||||    
T  24340434 tgattacttggtggttt 24340450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 24352702 - 24352815
Alignment:
Q  79 tatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagaga 178  Q
    |||||||||||||||||||| ||| ||||||||||||||  ||||||   |||  ||||  ||||| ||| ||||||||||| |||||||| |||| | |    
T  24352702 tatggaatccatccaccggatttcttagacaaatacctttccctcct---aatgtttcaaatttaattttttatggttttgggtatgacgaatcaacata 24352798  T
Q  179 tgattacttggtagttt 195  Q
    |||||||||||| ||||    
T  24352799 tgattacttggtggttt 24352815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 47452131 - 47452022
Alignment:
Q  16 atcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacc 115  Q
    ||||| || ||| ||||||||||||||| |||||| | ||    |||| ||||||||| ||| |||||||||||||||| |||||||| | |||||||||    
T  47452131 atcttgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacc 47452032  T
Q  116 ttcgcctcct 125  Q
    || |||||||    
T  47452031 tttgcctcct 47452022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 11006037 - 11005980
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatg 207  Q
    ||||||||||| |||||| | |||||||||||||||||||| || | ||| |||||||    
T  11006037 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatg 11005980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 11024612 - 11024555
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatg 207  Q
    ||||||||||| |||||| | |||||||||||||||||||| || | ||| |||||||    
T  11024612 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatg 11024555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 48863129 - 48863189
Alignment:
Q  65 ttcaaacatttacgtatggaatccatccaccggagttcatagacaaataccttcgcctcct 125  Q
    ||||||||| ||| ||||||||||||||||||||| ||| | |||||||||||||||||||    
T  48863129 ttcaaacatctacctatggaatccatccaccggagctcagaaacaaataccttcgcctcct 48863189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 45372305 - 45372192
Alignment:
Q  4 aatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttca 103  Q
    ||||||||||||||||| || ||| ||||||||||||||| |||||||| ||| |  ||  ||||| | | ||  |||||||||||||||| || |||||    
T  45372305 aatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgcatggtaattcaaccttctatctatggaatccatccactggtgttca 45372206  T
Q  104 tagacaaatacctt 117  Q
     | |||||||||||    
T  45372205 gaaacaaatacctt 45372192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 48852530 - 48852615
Alignment:
Q  32 ttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacctt 117  Q
    |||||||||||| |||||||| ||| |  ||| |||| | |||||  ||||||||||||||||||||||||| | |||||||||||    
T  48852530 ttcatgtagaggctttatatttttgcaccgttcttcagagatttatctatggaatccatccaccggagttcacaaacaaatacctt 48852615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 50251001 - 50250913
Alignment:
Q  29 aggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacctt 117  Q
    ||||||||||||||| |||||||| ||  | |||||||||| | | ||| |||||||||||||||||||  |||| | |||||||||||    
T  50251001 aggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctt 50250913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 7237806 - 7237767
Alignment:
Q  151 atggttttggttatgacgagtcaagagatgattacttggt 190  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggt 7237767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 7771396 - 7771435
Alignment:
Q  151 atggttttggttatgacgagtcaagagatgattacttggt 190  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggt 7771435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 7790081 - 7790120
Alignment:
Q  151 atggttttggttatgacgagtcaagagatgattacttggt 190  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggt 7790120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 48875710 - 48875797
Alignment:
Q  29 aggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacct 116  Q
    |||||| || ||||| |||||| ||||| | |||||||||| | | ||| |||||||||||||||||||| |||| | ||||||||||    
T  48875710 aggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaacaaatacct 48875797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 7908325 - 7908367
Alignment:
Q  153 ggttttggttatgacgagtcaagagatgattacttggtagttt 195  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggttt 7908367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 37827069 - 37827024
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttt 195  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||    
T  37827069 tatggttttggttatgaccagtctagagatgattacttggttgttt 37827024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 48870381 - 48870494
Alignment:
Q  4 aatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttca 103  Q
    ||||| ||| |||| || || ||| ||||||||||||||| |||||||| ||| | |||  | ||| | | ||| |||||||||||||||||||| ||||    
T  48870381 aatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttca 48870480  T
Q  104 tagacaaatacctt 117  Q
     | |||||||||||    
T  48870481 caaacaaatacctt 48870494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 48886067 - 48886180
Alignment:
Q  4 aatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttca 103  Q
    ||||| ||| |||| || || ||| ||||||||||||||| |||||||| ||| | |||  | ||| | | ||| |||||||||||||||||||| ||||    
T  48886067 aatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttca 48886166  T
Q  104 tagacaaatacctt 117  Q
     | |||||||||||    
T  48886167 caaacaaatacctt 48886180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 50669052 - 50669097
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttt 195  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||    
T  50669052 tatggttttggttatgaccggtcaagagatgattacttggttgttt 50669097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 7877727 - 7877771
Alignment:
Q  151 atggttttggttatgacgagtcaagagatgattacttggtagttt 195  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggttt 7877771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 7813474 - 7813509
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattac 185  Q
    |||||||||||||||||| |||||||||||||||||    
T  7813474 tatggttttggttatgaccagtcaagagatgattac 7813509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 7822963 - 7822998
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattac 185  Q
    |||||||||||||||||| |||||||||||||||||    
T  7822963 tatggttttggttatgaccagtcaagagatgattac 7822998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 49041330 - 49041191
Alignment:
Q  66 tcaaacat-ttacgtatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttat 164  Q
    |||||||| |||| ||||||| ||||||||||||| ||| | || |||||||| |||||||    || ||| ||  |||||||||||||||||||| |||    
T  49041330 tcaaacatcttacctatggaacccatccaccggagctcacaaactaatacctttgcctcctaatcatgatt-ac--ttaaatttctatggttttgggtat 49041234  T
Q  165 gacgagtcaagagatgattacttggtagttttagtatcctatg 207  Q
    ||   ||||| ||||||||||||| | |||| |||||| ||||    
T  49041233 gatccgtcaacagatgattacttgatggtttcagtatcgtatg 49041191  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 48170741 - 48170703
Alignment:
Q  79 tatggaatccatccaccggagttcatagacaaatacctt 117  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  48170741 tatggaatccatccacccgagttcataaacaaatacctt 48170703  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 50668916 - 50669002
Alignment:
Q  29 aggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacc 115  Q
    |||||| |||||||| |||||||| ||| | |||| ||| ||||| | | ||||||||||||||||| || |||||| ||| |||||    
T  50668916 aggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacagatacc 50669002  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 7800625 - 7800662
Alignment:
Q  144 aatttctatggttttggttatgacgagtcaagagatga 181  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  7800625 aatttatatggttttggttatgaccagtcaagagatga 7800662  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 48852663 - 48852720
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatg 207  Q
    ||||||||||| ||||||  |||||  ||||||||||||||||||||| | |||||||    
T  48852663 tatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctatg 48852720  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 50250865 - 50250809
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctat 206  Q
    |||||||||||||||||| | |||| ||||||||| ||||| |||| | ||||||||    
T  50250865 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 50250809  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 29696198 - 29696243
Alignment:
Q  145 atttctatggttttggttatgacgagtcaagagatgattacttggt 190  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||    
T  29696198 atttctatggttttgggtatgacgagtcaacagatgattacttggt 29696243  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 29688025 - 29688061
Alignment:
Q  79 tatggaatccatccaccggagttcatagacaaatacc 115  Q
    ||||||||||||||||||||||||| |||||||||||    
T  29688025 tatggaatccatccaccggagttcacagacaaatacc 29688061  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 179026 - 179069
Alignment:
Q  145 atttctatggttttggttatgacgagtcaagagatgattacttg 188  Q
    |||||||||||||||| ||||| ||||||| |||||||||||||    
T  179026 atttctatggttttgggtatgaggagtcaacagatgattacttg 179069  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 29712555 - 29712513
Alignment:
Q  145 atttctatggttttggttatgacgagtcaagagatgattactt 187  Q
    |||| ||||||||||| |||||||||||||| |||||||||||    
T  29712555 atttatatggttttgggtatgacgagtcaagggatgattactt 29712513  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 12200304 - 12200351
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagtttta 197  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  12200304 tatggttttggttatgaccggtcaagagatgattacttggtggtttta 12200351  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 12444732 - 12444779
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagtttta 197  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  12444732 tatggttttggttatgaccggtcaagagatgattacttggtggtttta 12444779  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 12195300 - 12195354
Alignment:
Q  153 ggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatg 207  Q
    ||||||||||||||||  | |||||||||||||||||| |||||| | |||||||    
T  12195300 ggttttggttatgacggattaagagatgattacttggtcgttttattgtcctatg 12195354  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 12439728 - 12439782
Alignment:
Q  153 ggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatg 207  Q
    ||||||||||||||||  | |||||||||||||||||| |||||| | |||||||    
T  12439728 ggttttggttatgacggattaagagatgattacttggtcgttttattgtcctatg 12439782  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 21979722 - 21979682
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggt 190  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  21979722 tatggttttggttatgaccagtcaagaaatgattacttggt 21979682  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 21015672 - 21015758
Alignment:
Q  31 gttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacctt 117  Q
    ||||||||||||| |||||||| ||| |   |  ||||||||| ||| ||||||||||||||||  ||||||| | |||||||||||    
T  21015672 gttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctt 21015758  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 48883798 - 48883843
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttt 195  Q
    ||||||||||||||||||  |||||||||||||||| |||| ||||    
T  48883798 tatggttttggttatgacccgtcaagagatgattacatggtggttt 48883843  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 12155 - 12203
Alignment:
Q  4 aatctcattttgatcttaaagttataggttcatgtagaggttttatatt 52  Q
    ||||||||||||||||| || ||| ||||||||||||| | ||||||||    
T  12155 aatctcattttgatcttcaaattaaaggttcatgtagaaggtttatatt 12203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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