View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15540_high_5 (Length: 354)
Name: NF15540_high_5
Description: NF15540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15540_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 32377487 - 32377152
Alignment:
| Q |
1 |
gaagacaactaggactctcatgcatgttaagcactgaagttggtgcagttctagcagtgatacgacgttatcccgaatttactcctgtctacaacatatc |
100 |
Q |
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| T |
32377487 |
gaagacaactaggactctcatgcatgttaagcactgaagttggtgcagttctagcagtgatacgacgttatcccgaatttactcctgtctacaacatatc |
32377388 |
T |
|
| Q |
101 |
ttctcctgaagaatcctacgattcttccattattaattctttaaggtctctccgttctctcatattcaatcctcaacaagaatggcgcactatcgatcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377387 |
ttctcctgaagaatcctacgattcttccattattaattctttaaggtctctccgttctctcatattcaatcctcaacaagaatggcgcactatcgatcct |
32377288 |
T |
|
| Q |
201 |
tccatttaccttactcctttccttgatgtcattcaaagcgatgatgttccagcgtccgcgacaggcgttgcactttcttccatactcaagattctcaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377287 |
tccatttaccttactcctttccttgatgtcattcaaagcgatgatgttccagcgtccgcgacaggcgttgcactttcttccatactcaagattctcaagt |
32377188 |
T |
|
| Q |
301 |
ttcaagtgtttgatgataggactccaggcgcaaaag |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32377187 |
ttcaagtgtttgatgataggactccaggcgcaaaag |
32377152 |
T |
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