View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15540_low_1 (Length: 709)

Name: NF15540_low_1
Description: NF15540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15540_low_1
NF15540_low_1
[»] chr2 (20 HSPs)
chr2 (1-709)||(35367712-35368436)
chr2 (405-689)||(35374296-35374571)
chr2 (388-689)||(35371486-35371787)
chr2 (393-611)||(35345987-35346205)
chr2 (384-607)||(35355585-35355808)
chr2 (403-613)||(35364256-35364469)
chr2 (323-607)||(35335430-35335699)
chr2 (388-607)||(35343475-35343694)
chr2 (388-607)||(35348166-35348385)
chr2 (392-467)||(35351004-35351079)
chr2 (373-466)||(35340561-35340656)
chr2 (606-709)||(35348014-35348112)
chr2 (644-689)||(35355899-35355944)
chr2 (655-695)||(35346269-35346309)
chr2 (141-239)||(4762117-4762214)
chr2 (147-244)||(14284539-14284637)
chr2 (4-52)||(18906804-18906852)
chr2 (320-359)||(35374243-35374282)
chr2 (176-239)||(37624993-37625056)
chr2 (634-671)||(35335752-35335791)
[»] chr8 (9 HSPs)
chr8 (141-244)||(24560022-24560124)
chr8 (141-244)||(11336734-11336838)
chr8 (144-228)||(30734913-30734995)
chr8 (141-240)||(34702697-34702796)
chr8 (4-52)||(2655226-2655274)
chr8 (144-210)||(159173-159238)
chr8 (141-239)||(33388456-33388553)
chr8 (200-237)||(25888052-25888089)
chr8 (199-239)||(30989507-30989547)
[»] chr5 (3 HSPs)
chr5 (141-240)||(4982480-4982577)
chr5 (141-244)||(30116932-30117034)
chr5 (141-224)||(37148798-37148882)
[»] chr3 (4 HSPs)
chr3 (141-240)||(30686834-30686932)
chr3 (141-240)||(36226159-36226257)
chr3 (145-236)||(9644502-9644592)
chr3 (4-52)||(51818436-51818484)
[»] chr1 (6 HSPs)
chr1 (141-239)||(17498977-17499074)
chr1 (141-240)||(52413872-52413969)
chr1 (142-235)||(40372689-40372781)
chr1 (141-227)||(14499656-14499741)
chr1 (174-240)||(18908225-18908291)
chr1 (141-239)||(30512617-30512715)
[»] chr7 (5 HSPs)
chr7 (141-240)||(38318976-38319074)
chr7 (175-235)||(32958231-32958291)
chr7 (141-219)||(41894741-41894818)
chr7 (4-52)||(5968393-5968441)
chr7 (4-52)||(44397427-44397475)
[»] chr6 (3 HSPs)
chr6 (144-239)||(33756039-33756133)
chr6 (144-223)||(24822614-24822692)
chr6 (4-52)||(8438929-8438977)
[»] chr4 (8 HSPs)
chr4 (144-235)||(32280346-32280437)
chr4 (415-467)||(9063702-9063754)
chr4 (146-228)||(42168988-42169069)
chr4 (415-468)||(9060405-9060458)
chr4 (415-467)||(9072768-9072820)
chr4 (4-52)||(9088118-9088166)
chr4 (4-44)||(23775216-23775256)
chr4 (12-52)||(53718260-53718300)
[»] scaffold0102 (1 HSPs)
scaffold0102 (189-239)||(21523-21573)


Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 709
Target Start/End: Original strand, 35367712 - 35368436
Alignment:
Q  1 taattaaaagagaaatgatattaagtgatgtggttaaagtatttatcttttagannnnnnnngtttgtgtgtgtaagatacagtagtttcttaacggata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||| ||||| |||||||||   |||||||||||||    
T  35367712 taattaaaagagaaatgatattaagtgatgtggttaaagtatttatcttttagattatttttgtttgtatgtgtgagatacagt---ttcttaacggata 35367808  T
Q  101 agaagaaatggtcattttttatgaagggaaatgcaaacttcacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataat 200  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||||| ||||| || |||||||||||||| ||||||||| ||    
T  35367809 agaagaaatggtcattttttatgaagagaaatgctaacttcacaggttaaaaagttaaagatataattactt-ttttgaaaattgtgtattcaacattat 35367907  T
Q  201 aaaagtttaaacatttatactttcaatataaaatttattgcttannnnnnnnnatagctccttaacttgtatcttaatggcacacattagcatgaccatt 300  Q
    |||||||||||||||||| || |||||| |||||||||||||||         |||||||||| ||||||  | |||||| |||| ||||||||| | ||    
T  35367908 aaaagtttaaacatttattctatcaatacaaaatttattgcttatttctttttatagctcctttacttgtgccctaatggtacacgttagcatgatcctt 35368007  T
Q  301 ttatgaaacgtaa----------------------ccacaattacaatatcattgcaagacctttaaaacaattaaaactaccatgatgcctagtactaa 378  Q
    |||||||| ||||                      |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  35368008 ttatgaaatgtaaacacaattacaatatcattgcaccacaattacaatatcattgcaagacctttaaaacaat-aaaactaccatgatgcctaatagtaa 35368106  T
Q  379 ctagttagtgactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatc 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  35368107 ctagttagtgactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccaataagaatc 35368206  T
Q  479 ttgatcctcgttatgataatcttcttcaatgcaagatacagatgtacaaccaaaccaatcaacctcaccttcaccatatgcatgttgcttgcagtttaga 578  Q
     ||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  35368207 atgatccgtgttatgataatcttcttcaatacaagatacagatgtacaaccaaaccaatcaacttcaccttcaccatatgcatgctgcttgcagtttaga 35368306  T
Q  579 gcaatgaccatggaaatggatgccattttagttatatgagatggtaatgtaattatgtgagttga--tgagttgtgtttgagttaggattggagactttg 676  Q
    |||||||||||||||||| || |||  |||||||||| | ||| ||| ||| || ||||||||||  || ||| | |||||||||  |||||||| ||||    
T  35368307 gcaatgaccatggaaatgaatacca--ttagttatattatatgctaaggtagttgtgtgagttgagttgtgtt-tatttgagttaccattggagagtttg 35368403  T
Q  677 tgtgttatatatataactagaagataagttgtt 709  Q
    |||||||||||||||||||||||||||||||||    
T  35368404 tgtgttatatatataactagaagataagttgtt 35368436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 405 - 689
Target Start/End: Original strand, 35374296 - 35374571
Alignment:
Q  405 acattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgatcctcgttatgataatcttctt 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |  |||||||| | ||  ||||||||||||||||||    
T  35374296 acattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcatcatcaccttcctggtaagaatctcggtctccgttatgataatcttctt 35374395  T
Q  505 caatgcaagatacagatgtacaaccaaaccaatcaacctcaccttcaccatatgcatgttgcttgcagtttagagcaatgaccatggaaatggatgccat 604  Q
    ||||||||||||||  |||| || ||||||||| |      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35374396 caatgcaagatacacttgtataatcaaaccaatta------ccttcaccatatgcatgttgcttgcagtttagagcaatgaccatggaaatggatgccat 35374489  T
Q  605 tttagttatatgagatggtaatgtaattatgtgagttgatgagttgtgtttgagttaggattggagactttgtgtgttatatata 689  Q
    ||||||||||||||||| |||||||||| |||||||   |||| ||||||||||||||||||||||| |||||||||||||||||    
T  35374490 tttagttatatgagatgctaatgtaattgtgtgagt---tgagctgtgtttgagttaggattggagagtttgtgtgttatatata 35374571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 388 - 689
Target Start/End: Original strand, 35371486 - 35371787
Alignment:
Q  388 gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatc---------gccttcccgagaagaatc 478  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||         |||||||    | || ||    
T  35371486 gactaatgtaagttaacacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcgtcgtcatcgtcgtcgccttccttgcatgagtc 35371585  T
Q  479 ttgatcctcgttatgataatcttcttcaatgcaagatacagatgtacaaccaaaccaatcaacctcaccttcaccatatgcatgttgcttgcagtttaga 578  Q
    | ||||  | ||  | ||||||||||||||||||||||||  |||| || ||||||||| |      |||||||||||| ||||||||||||| ||||||    
T  35371586 tcgatctccattgcggtaatcttcttcaatgcaagatacacttgtataatcaaaccaatta------ccttcaccatatacatgttgcttgcactttaga 35371679  T
Q  579 gcaatgaccatggaaatggatgccattttagttatatgagatggtaatgtaattatgtgagttgatgagttgtgtttgagttaggattggagactttgtg 678  Q
    |||||||||||  |||||||||||||||||||||||||||||| ||| |||||| |||||||   ||||||||||||||||||| |||||||| ||||||    
T  35371680 gcaatgaccatcaaaatggatgccattttagttatatgagatgctaacgtaattgtgtgagt---tgagttgtgtttgagttagaattggagagtttgtg 35371776  T
Q  679 tgttatatata 689  Q
    |||||||||||    
T  35371777 tgttatatata 35371787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 393 - 611
Target Start/End: Original strand, 35345987 - 35346205
Alignment:
Q  393 atgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgatcctcgttat 492  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||    |||||||||||||| | ||      
T  35345987 atgtaagttaacacattagagttttacgcagcgggagcatagtcataaccaccatcatcgtcatcatcgccttccttgtaagaatcttgatccccattgc 35346086  T
Q  493 gataatcttcttcaatgcaagatacagatgtacaaccaaaccaatcaacctcaccttcaccatatgcatgttgcttgcagtttagagcaatgaccatgga 592  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||| | |  ||||||||| ||||||  ||||||||   | ||||||||||| || |    
T  35346087 gataatcttctacaatacaagatacagatgtataaccaaaccaatcaccgttgccttcaccacatgcattctgcttgcacaatggagcaatgaccgtgaa 35346186  T
Q  593 aatggatgccattttagtt 611  Q
    |||||||||||||||||||    
T  35346187 aatggatgccattttagtt 35346205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 384 - 607
Target Start/End: Original strand, 35355585 - 35355808
Alignment:
Q  384 tagtgactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgat 483  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    |||| ||| |||    
T  35355585 tagtgacttatgtaagttaacacattagagttttaggcagcaggagcatagtcataaccaccgtcatcgtcatcatcgccttccatgtaagagtctcgat 35355684  T
Q  484 cctcgttatgataatcttcttcaatgcaagatacagatgtacaaccaaaccaatcaacctcaccttcaccatatgcatgttgcttgcagtttagagcaat 583  Q
    |  | ||  |||||||||||||||||||||||||| ||||| |||||||||||||| | | ||||||| ||||| |||| | |||||| ||| ||| |||    
T  35355685 ctccattgcgataatcttcttcaatgcaagatacatatgtataaccaaaccaatcaccattaccttcatcatatccatgctccttgcactttggagtaat 35355784  T
Q  584 gaccatggaaatggatgccatttt 607  Q
    | |||| ||||| |||||||||||    
T  35355785 ggccatagaaattgatgccatttt 35355808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 403 - 613
Target Start/End: Original strand, 35364256 - 35364469
Alignment:
Q  403 acacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgatcctcgttatgataatcttc 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |  ||| | ||||| ||||   |||||||||    
T  35364256 acacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttccctgtataaatttcgatccccgttggtataatcttc 35364355  T
Q  503 ttcaatgcaagatacagatgtacaaccaaaccaatcaacctcaccttcacc---atatgcatgttgcttgcagtttagagcaatgaccatggaaatggat 599  Q
    |||||||||||||||| | ||| |||| ||||||||| | |||||||||||   |||||||| ||||||||| ||| ||||||||||| |||||||| ||    
T  35364356 ttcaatgcaagatacacacgtataaccgaaccaatcaccgtcaccttcaccattatatgcatattgcttgcactttggagcaatgaccgtggaaatgaat 35364455  T
Q  600 gccattttagttat 613  Q
    | |||||| |||||    
T  35364456 gtcattttggttat 35364469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 323 - 607
Target Start/End: Original strand, 35335430 - 35335699
Alignment:
Q  323 caatatcattgcaa-gacctttaaaacaattaaaactaccatgatgcctagtactaactagttagtgactaatgtaagttaacacattagagttttatgc 421  Q
    |||| ||||||||| || ||||||||| |||||||||| ||||    ||| ||||||||||||||||||||||||||||||||||||||    |||||||    
T  35335430 caatgtcattgcaaagatctttaaaaccattaaaactatcatg----ctaatactaactagttagtgactaatgtaagttaacacattactactttatgc 35335525  T
Q  422 agcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgatcctcgttatgataatcttcttcaatgcaagatacagat 521  Q
    ||||||||||||||||||||||||||| || || |||||               |||    ||| | || | ||||||||||||||||||||||| |  |    
T  35335526 agcgggagcatagtcataaccaccgtcgtcatcatcatc---------------atcaccttccccattgtaataatcttcttcaatgcaagatatattt 35335610  T
Q  522 gtacaaccaaaccaatcaacctcaccttcacc---atatgcatgttgcttgcagtttagagcaatgaccatggaaatggatgccatttt 607  Q
    ||  ||||||||||||||   || ||||||||   | |||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  35335611 gtgtaaccaaaccaatcacagtcgccttcaccgttaaatgcatgttgcttgcactttggagcaatgaccatggaaatggatgccatttt 35335699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 388 - 607
Target Start/End: Complemental strand, 35343694 - 35343475
Alignment:
Q  388 gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgatcctc 487  Q
    |||||||||||||||||||||||| |||||| || || ||||||||||| |||||||| |||||||| |||||||||||     | || ||| ||||  |    
T  35343694 gactaatgtaagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcgccttctttgcatgagtctcgatctcc 35343595  T
Q  488 gttatgataatcttcttcaatgcaagatacagatgtacaaccaaaccaatcaacctcaccttcaccatatgcatgttgcttgcagtttagagcaatgacc 587  Q
     || ||||||| ||||||||||||||||||| ||||| ||| || ||||||| | | ||||||||||||| |||| |||| ||| ||| ||  |||| ||    
T  35343594 attgtgataattttcttcaatgcaagatacacatgtataactaatccaatcaccgttaccttcaccatatccatgctgctcgcactttggaataatggcc 35343495  T
Q  588 atggaaatggatgccatttt 607  Q
    |  |||||||||||||||||    
T  35343494 aaagaaatggatgccatttt 35343475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 388 - 607
Target Start/End: Complemental strand, 35348385 - 35348166
Alignment:
Q  388 gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgatcctc 487  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||| ||||||    | || ||| ||||  |    
T  35348385 gactaatgtaagttaacacattagagttttaggcagtgggagcatagtcgtaaccaccatcatcgtcatcatcaccttccttgcatgagtctcgatctcc 35348286  T
Q  488 gttatgataatcttcttcaatgcaagatacagatgtacaaccaaaccaatcaacctcaccttcaccatatgcatgttgcttgcagtttagagcaatgacc 587  Q
     ||  ||| |||||||| |||||||||||||  |||| |||||||||||||| | | ||||||||  ||| |||| |||||||| ||| ||| |||  ||    
T  35348285 attgcgattatcttctttaatgcaagatacacttgtataaccaaaccaatcaccgttaccttcactgtatccatgatgcttgcactttggagtaatagcc 35348186  T
Q  588 atggaaatggatgccatttt 607  Q
    |  |||||||||||||||||    
T  35348185 aaagaaatggatgccatttt 35348166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 392 - 467
Target Start/End: Original strand, 35351004 - 35351079
Alignment:
Q  392 aatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcc 467  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||| ||||||    
T  35351004 aatgtaagttagcacattagagtcttatgcagcgggagcgtagtcataaccaccatcatcgtcatcatcaccttcc 35351079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 373 - 466
Target Start/End: Original strand, 35340561 - 35340656
Alignment:
Q  373 tactaactagttag-tgactaatgtaagttaacacattagagtttt-atgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttc 466  Q
    |||||||||| ||| |||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||| || ||||| ||||| |||||    
T  35340561 tactaactagctagctgactaatataagttcacacattagagtttttatgcagctggagcatagtcataaccaccatcgtcgtcatcatcaccttc 35340656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 709
Target Start/End: Complemental strand, 35348112 - 35348014
Alignment:
Q  606 ttagttatatgagatggtaatgtaattatgtgagttgatgagttgtgtttgagttaggattggagactttgtgtgttatatatataactagaagataagt 705  Q
    |||||||||||| ||| ||| ||| || ||||||||||   | ||||||||||||||||||||||| |||||||||||||  |||||| |||||| ||||    
T  35348112 ttagttatatgatatgctaaggtagttgtgtgagttga---gctgtgtttgagttaggattggagagtttgtgtgttata--tataacaagaagagaagt 35348018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 644 - 689
Target Start/End: Original strand, 35355899 - 35355944
Alignment:
Q  644 tgagttgtgtttgagttaggattggagactttgtgtgttatatata 689  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  35355899 tgagttgtgtttgagttaggattggagagtttgtgtgttatatata 35355944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 695
Target Start/End: Original strand, 35346269 - 35346309
Alignment:
Q  655 tgagttaggattggagactttgtgtgttatatatataacta 695  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  35346269 tgagttaggattggagagtttgtgtgttatatatataacta 35346309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 4762214 - 4762117
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttatt 239  Q
    |||||||||| || ||||| ||| |||| ||| ||| |||| ||||| |||||| |  |||||||||| || |||||||||||||||| ||||||||||    
T  4762214 cacaagttaagaaactaaaaataaaattctttatttggaaa-ttgtgtattcaatagtataaaagttttaatatttatactttcaatacaaaatttatt 4762117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 14284637 - 14284539
Alignment:
Q  147 ttaaaaagctaaagatagaattatt-tgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttattgctta 244  Q
    |||||||  |||||||| ||||||| | |||| ||||||| | ||||||| | | ||||||| ||| |||||||||||||||| ||||||||| |||||    
T  14284637 ttaaaaaattaaagataaaattattatttttttaaaattgagtattcaacgttacaaaagttcaaatatttatactttcaatacaaaatttatcgctta 14284539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 18906852 - 18906804
Alignment:
Q  4 ttaaaagagaaatgatattaagtgatgtggttaaagtatttatctttta 52  Q
    ||||||||||| ||||||||| |||||| |||||| |||||||||||||    
T  18906852 ttaaaagagaattgatattaaatgatgtagttaaattatttatctttta 18906804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 35374243 - 35374282
Alignment:
Q  320 ttacaatatcattgcaagacctttaaaacaattaaaacta 359  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  35374243 ttacaatgtcattgcaagacctttaaaaccattaaaacta 35374282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 37624993 - 37625056
Alignment:
Q  176 ttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttatt 239  Q
    |||||||||||| |||||| ||  ||||||||| || | ||||| |||||||||||||||||||    
T  37624993 ttgaaaattgtgcattcaatatcttaaaagttttaaaagttatattttcaatataaaatttatt 37625056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 634 - 671
Target Start/End: Original strand, 35335752 - 35335791
Alignment:
Q  634 tgtgagttgat--gagttgtgtttgagttaggattggaga 671  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  35335752 tgtgagttgatttgagttgtgtttgagttaggattggaga 35335791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 9e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 24560022 - 24560124
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttattg 240  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||    
T  24560022 cacaagttaagaagctaaagatagaattattt-ttttgaaaattgtgtattcaacattacaaaagtttaaacatttatactttcaatacaaaatttattg 24560120  T
Q  241 ctta 244  Q
    ||||    
T  24560121 ctta 24560124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 11336838 - 11336734
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatt--tgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttat 238  Q
    ||||||||||||||||||||||| |||||||  | ||||   ||||||| ||||||||| | |||||||||| ||||||||||||  ||| |||||||||    
T  11336838 cacaagttaaaaagctaaagata-aattattattatttttttaattgtgtattcaacatcacaaaagtttaatcatttatacttttgatacaaaatttat 11336740  T
Q  239 tgctta 244  Q
    ||||||    
T  11336739 tgctta 11336734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 30734995 - 30734913
Alignment:
Q  144 aagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaata 228  Q
    ||||||| ||||| |||||||||| ||||  |||| |||||||| ||||||| | | ||||||||||||||||||||||||||||    
T  30734995 aagttaagaagctgaagatagaataattt--tttggaaattgtgtattcaacttcacaaaagtttaaacatttatactttcaata 30734913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 34702697 - 34702796
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttattg 240  Q
    |||||||||| ||| |||||||    || ||| ||||||||||| || ||||||||| | ||||||||||||||||||| ||| |||| |||||| ||||    
T  34702697 cacaagttaagaagttaaagatgatttttttttttttgaaaattttgtattcaacatcacaaaagtttaaacatttatatttttaatacaaaattaattg 34702796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 2655226 - 2655274
Alignment:
Q  4 ttaaaagagaaatgatattaagtgatgtggttaaagtatttatctttta 52  Q
    |||||||| |||||||||||||||||||| ||||| ||||| |||||||    
T  2655226 ttaaaagaaaaatgatattaagtgatgtgattaaaatatttttctttta 2655274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 159238 - 159173
Alignment:
Q  144 aagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaa 210  Q
    |||||||||| |||||||||||| ||||| |||||||| ||||| |||||| ||  |||||||||||    
T  159238 aagttaaaaaactaaagatagaaatattt-ttttgaaacttgtgtattcaatattgtaaaagtttaa 159173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 33388553 - 33388456
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttatt 239  Q
    ||||||||||||||||||| ||| || ||||| |||||||| ||||| ||||||  |   ||||||||||  ||||||| |||||||  ||||||||||    
T  33388553 cacaagttaaaaagctaaatataaaagtattt-ttttgaaacttgtgtattcaatgttgcaaaagtttaacaatttatattttcaattcaaaatttatt 33388456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 25888052 - 25888089
Alignment:
Q  200 taaaagtttaaacatttatactttcaatataaaattta 237  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  25888052 taaaagtttaaagatttatacttttaatataaaattta 25888089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 30989547 - 30989507
Alignment:
Q  199 ataaaagtttaaacatttatactttcaatataaaatttatt 239  Q
    ||||||||||||| ||||||| |||||||| ||||||||||    
T  30989547 ataaaagtttaaatatttatattttcaatacaaaatttatt 30989507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 4982480 - 4982577
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttattg 240  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| ||||    
T  4982480 cacaagttaaaaagctaaagatagaat-attt-ttttggaaattgtgcattcaacatcataaaagtttaaacatttatactttcaatacaaaattaattg 4982577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 30116932 - 30117034
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttattg 240  Q
    |||||||||||| |||||| ||| |||||||| ||| |||||||||| ||||||||  | ||||||||||||||||||| ||| ||||||||||||||||    
T  30116932 cacaagttaaaa-gctaaatataaaattatttttttagaaaattgtgtattcaacactacaaaagtttaaacatttataatttaaatataaaatttattg 30117030  T
Q  241 ctta 244  Q
    ||||    
T  30117031 ctta 30117034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 37148882 - 37148798
Alignment:
Q  141 cacaagttaaaaagctaaagatagaat-tatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttc 224  Q
    |||||||||| |||||||||||| ||| ||||| ||| | |||||||| ||||||||| | ||||||||||||||||||||||||    
T  37148882 cacaagttaagaagctaaagataaaatatatttttttgggaaattgtgcattcaacatcacaaaagtttaaacatttatactttc 37148798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 30686834 - 30686932
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttattg 240  Q
    |||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||| |||||| |||| || ||||| |||| ||||||||||||||||    
T  30686834 cacaagttaagaagctaaagatagaat-attttttttgaaaattgtgtattcaacatcataaaaatttacacttttatgcttttaatataaaatttattg 30686932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 36226159 - 36226257
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttattg 240  Q
    ||||||||||| ||||||| ||||||| |||| |||| ||||||||| ||||||||| |||||||| |||| |||||||||||||||| |||||| ||||    
T  36226159 cacaagttaaatagctaaaaatagaataattt-ttttaaaaattgtgtattcaacatcataaaagtataaatatttatactttcaatacaaaattaattg 36226257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 9644592 - 9644502
Alignment:
Q  145 agttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaattt 236  Q
    ||||||| || |||| ||| |||||||| |||||||||||||| ||||||||| | || |||||||||||||||| |||||||| |||||||    
T  9644592 agttaaagagttaaaaataaaattattt-ttttgaaaattgtgtattcaacattacaacagtttaaacatttataatttcaatacaaaattt 9644502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 51818484 - 51818436
Alignment:
Q  4 ttaaaagagaaatgatattaagtgatgtggttaaagtatttatctttta 52  Q
    |||||||| |||| ||||||||||||||| ||||| ||||| |||||||    
T  51818484 ttaaaagaaaaataatattaagtgatgtgattaaattatttttctttta 51818436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 17498977 - 17499074
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttatt 239  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||||| |||| |||| | |||| |||||||||||| |||||||||| ||||||||||    
T  17498977 cacaagttaagaagttaaagatagaattattt-ttttgaaaattgtgtattctacattagaaaactttaaacatttaaactttcaatacaaaatttatt 17499074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 52413969 - 52413872
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttattg 240  Q
    |||||||||| |||||||||||||||| |||| ||||| |||||||| ||||||| | | |||||||| ||||||||||||||||||| |||||| ||||    
T  52413969 cacaagttaagaagctaaagatagaat-attt-ttttggaaattgtgtattcaacttcacaaaagtttgaacatttatactttcaatacaaaattaattg 52413872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 40372689 - 40372781
Alignment:
Q  142 acaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatt 235  Q
    |||| |||| ||| |||||||| ||| |||| ||||| |||||||| ||||||||| | |||||||||||||||||||||||| ||||||||||    
T  40372689 acaaattaagaagttaaagataaaat-attttttttggaaattgtgtattcaacatcacaaaagtttaaacatttatactttctatataaaatt 40372781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 14499741 - 14499656
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaat 227  Q
    |||||||||| ||| ||||||||||||||| | ||| |||||||||| |||||| || | |||| |||||| |||||||||||||||    
T  14499741 cacaagttaacaagttaaagatagaattatatattt-gaaaattgtgtattcaatattacaaaactttaaatatttatactttcaat 14499656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 18908291 - 18908225
Alignment:
Q  174 ttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttattg 240  Q
    |||| |||| |||| ||||||| | | ||||||||||||||||||||||||||||||||||| ||||    
T  18908291 tttttaaaaatgtgtattcaacttcacaaaagtttaaacatttatactttcaatataaaattaattg 18908225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 30512715 - 30512617
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttatt 239  Q
    ||||||||||||   ||||||||||| ||||| | ||| || ||||| |||||| ||  ||||||||||| |||||||| |||||||| || |||||||    
T  30512715 cacaagttaaaatcttaaagatagaaatatttttattggaatttgtgtattcaatattgtaaaagtttaatcatttatattttcaatacaatatttatt 30512617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 38318976 - 38319074
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttattg 240  Q
    |||||||||| |||||||||||||||| || | ||||| |||||||| ||| ||||| | |||||||||||||||||||||||||||| |||||| ||||    
T  38318976 cacaagttaagaagctaaagatagaataatat-ttttggaaattgtgcatttaacatcacaaaagtttaaacatttatactttcaatacaaaattaattg 38319074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 32958231 - 32958291
Alignment:
Q  175 tttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatt 235  Q
    |||| |||||||| ||||||||| | |||||||||||||||||||||||||||| ||||||    
T  32958231 tttggaaattgtgtattcaacatcacaaaagtttaaacatttatactttcaatacaaaatt 32958291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 41894818 - 41894741
Alignment:
Q  141 cacaagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttata 219  Q
    |||||||||| ||| |||||||| |||| ||| |||||||||||||| ||||||||| | ||| |||||| ||||||||    
T  41894818 cacaagttaagaagttaaagatataattgttt-ttttgaaaattgtgtattcaacatcacaaatgtttaatcatttata 41894741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 5968441 - 5968393
Alignment:
Q  4 ttaaaagagaaatgatattaagtgatgtggttaaagtatttatctttta 52  Q
    |||||| |||||||||||||||| ||||| ||||| ||||| |||||||    
T  5968441 ttaaaatagaaatgatattaagtaatgtgattaaattatttctctttta 5968393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 44397427 - 44397475
Alignment:
Q  4 ttaaaagagaaatgatattaagtgatgtggttaaagtatttatctttta 52  Q
    ||||||||||||| |||||||||||||||  |||| ||||| |||||||    
T  44397427 ttaaaagagaaatcatattaagtgatgtgactaaattatttctctttta 44397475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 33756133 - 33756039
Alignment:
Q  144 aagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatttatt 239  Q
    ||||||| ||| ||||||||||||||||| | ||| |||||||| ||||||||| | ||||||| |||||||||||||||||||| ||||||||||    
T  33756133 aagttaagaagttaaagatagaattattt-tcttggaaattgtgtattcaacattacaaaagttgaaacatttatactttcaatacaaaatttatt 33756039  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 24822692 - 24822614
Alignment:
Q  144 aagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatacttt 223  Q
    |||||||||||||||||||| |||||||| ||||| |||||||| ||||||||| | ||||||||||| |||||||||||    
T  24822692 aagttaaaaagctaaagataaaattattt-ttttggaaattgtgcattcaacatcacaaaagtttaaatatttatacttt 24822614  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 8438929 - 8438977
Alignment:
Q  4 ttaaaagagaaatgatattaagtgatgtggttaaagtatttatctttta 52  Q
    |||||||||| |||||||||||||||||| ||||| ||||| |||||||    
T  8438929 ttaaaagagagatgatattaagtgatgtgattaaattatttctctttta 8438977  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 32280437 - 32280346
Alignment:
Q  144 aagttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaatataaaatt 235  Q
    ||||||| |||  ||| |||||||  ||| ||||||||||| || ||||||||| | |||||||||||||||||||||||||||| ||||||    
T  32280437 aagttaagaagtcaaatatagaatatttttttttgaaaattatgcattcaacatcacaaaagtttaaacatttatactttcaatacaaaatt 32280346  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 467
Target Start/End: Complemental strand, 9063754 - 9063702
Alignment:
Q  415 tttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcc 467  Q
    |||| |||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  9063754 tttaagcagcgggagcatagtcataaccaccatcatcgtcatcatcaccttcc 9063702  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 42168988 - 42169069
Alignment:
Q  146 gttaaaaagctaaagatagaattatttgttttgaaaattgtggattcaacataataaaagtttaaacatttatactttcaata 228  Q
    ||||| |||||||| | | |||||||| |||||||||||||| ||||||||| | |||||||||||  |||||||||| ||||    
T  42168988 gttaagaagctaaataaaaaattattt-ttttgaaaattgtgtattcaacattacaaaagtttaaatgtttatacttttaata 42169069  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 468
Target Start/End: Complemental strand, 9060458 - 9060405
Alignment:
Q  415 tttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttccc 468  Q
    |||| |||||||||||||| ||||| ||||| |||||||| ||||| |||||||    
T  9060458 tttaagcagcgggagcataatcatatccaccatcatcgtcatcatcaccttccc 9060405  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 415 - 467
Target Start/End: Complemental strand, 9072820 - 9072768
Alignment:
Q  415 tttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcc 467  Q
    |||| ||||| |||||||||||||| ||||| |||||||| ||||| ||||||    
T  9072820 tttaagcagcaggagcatagtcatagccaccatcatcgtcatcatcaccttcc 9072768  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 9088118 - 9088166
Alignment:
Q  4 ttaaaagagaaatgatattaagtgatgtggttaaagtatttatctttta 52  Q
    ||||||||||||||||||||||| |||||  |||| ||||| |||||||    
T  9088118 ttaaaagagaaatgatattaagtaatgtgactaaactatttctctttta 9088166  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 23775216 - 23775256
Alignment:
Q  4 ttaaaagagaaatgatattaagtgatgtggttaaagtattt 44  Q
    |||||||| |||||||||||||||| ||||||||| |||||    
T  23775216 ttaaaagataaatgatattaagtgacgtggttaaaatattt 23775256  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 53718260 - 53718300
Alignment:
Q  12 gaaatgatattaagtgatgtggttaaagtatttatctttta 52  Q
    ||||||||||||||||||||| ||||| ||||| |||||||    
T  53718260 gaaatgatattaagtgatgtgattaaattatttctctttta 53718300  T

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Target: scaffold0102 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 21523 - 21573
Alignment:
Q  189 attcaacataataaaagtttaaacatttatactttcaatataaaatttatt 239  Q
    |||||| || ||||||||||||  ||||||| |||||||||||||||||||    
T  21523 attcaatattataaaagtttaataatttatattttcaatataaaatttatt 21573  T

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