View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15540_low_10 (Length: 299)
Name: NF15540_low_10
Description: NF15540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15540_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 54233938 - 54234193
Alignment:
| Q |
13 |
aatatccagccctatacaatttttctaataaagatggaaattctacactccaaattaaagcgtattttgccgagaatttatcttgtaagttcaatctggc |
112 |
Q |
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| T |
54233938 |
aatatccagccctatacaatttt-ctaataaagatggaaattctacactccaaattaaagcgtattttgccgagcatttatcttgtaagttcaatctggc |
54234036 |
T |
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| Q |
113 |
acaacatgtgagaaataaattctatgaaatggaggctcaagttatggcatttgattaatctttaatagtaacattgataagaagaaatgctcctacattg |
212 |
Q |
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| T |
54234037 |
acaacatgtgagaaataaattctatgaaatggaggctcaagttatggcatttgattcatctttaatagtaacattgataagaagaaatgctcctacattg |
54234136 |
T |
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| Q |
213 |
catacctcatgcctaatttcacgtccattgctttcctaactcatacacgtgattcat |
269 |
Q |
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| T |
54234137 |
catacctcatgcctaatttcacgtccattgctttcctaactcatacacgtgattcat |
54234193 |
T |
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