View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15540_low_15 (Length: 240)
Name: NF15540_low_15
Description: NF15540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15540_low_15 |
 | |
|
| [»] scaffold0271 (2 HSPs) |
| |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0271 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 14400 - 14178
Alignment:
| Q |
18 |
aacatatacccttgatctgcataggtcaatttgatattgttcttgggagtaagtatgatcaccgatcaagttggtttgattacagtttacaaagaatata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14400 |
aacatatacccttgatctgcataggtcaatttgatattgttcttgggagtaagtatgatcaccgatcaagttggtttgattacagtttacaaagaatata |
14301 |
T |
|
| Q |
118 |
ggtcnnnnnnnatgagcaaagaatatatagatcttagtcaatgtttgactagtcttttttggtgtaatattagttaggaaactaataagtgcttaaactt |
217 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14300 |
ggtctttttttatgagcaaagaatatataggtcttagtcaatgtttgactagtcttttttggtgtaatattagttaggaaactaccaagtgcttaaactt |
14201 |
T |
|
| Q |
218 |
tgaagttcaaactctgaccaaaa |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
14200 |
tgaagttcaaactctgaccaaaa |
14178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 3748 - 3671
Alignment:
| Q |
25 |
acccttgatctgcataggtcaatttgatattgttcttgggagtaagtatgatcaccgatcaagttggtttgattacag |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||| ||| || ||||| |||||||| ||||| ||||||| |
|
|
| T |
3748 |
acccttgatctgcataggtcaatttgatattcttcttcggagcaaggatcatcacggatcaagtgggtttcattacag |
3671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 41415807 - 41416012
Alignment:
| Q |
39 |
taggtcaatttgatattgttcttgggagtaagtatgatcaccgatcaagttggtttg----attacagtttacaaagaatataggtcnnnnnnn-atgag |
133 |
Q |
| |
|
||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
41415807 |
taggtcaatttgatattgttcttggtagcaaggatgatcatggatcaagttggtttggttgattacagtttacagtgaatataggtctttttttgatgag |
41415906 |
T |
|
| Q |
134 |
caaagaatatatagatcttagtcaatgtttgactagtcttttttggtgtaatattagttaggaaactaataagtgcttaaactttgaagttcaaactctg |
233 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41415907 |
cagagaacatatagatcttagtcaatgtttgactagtcttttttggtgtagtattagttaggaaactaataagtgcttaaactttgaagttcaaactttg |
41416006 |
T |
|
| Q |
234 |
accaaa |
239 |
Q |
| |
|
|||||| |
|
|
| T |
41416007 |
accaaa |
41416012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 41417569 - 41417632
Alignment:
| Q |
25 |
acccttgatctgcataggtcaatttgatattgttcttgggagtaagtatgatcaccgatcaagt |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||||| |
|
|
| T |
41417569 |
acccttgatctgcataggtcaatttgatattgttcttgggagcaaggatcatcacggatcaagt |
41417632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 41417650 - 41417732
Alignment:
| Q |
142 |
atatagatcttagtcaatgtttgactagtcttttttggtgtaatattagttaggaaactaataagtgcttaaactttgaagtt |
224 |
Q |
| |
|
|||||| ||||| ||||||||| || |||||||| ||||||||||| ||| |||||||| ||| || |||||||||||||| |
|
|
| T |
41417650 |
atatagttcttaatcaatgttttacaagtcttttaaggtgtaatattgattatgaaactaacaagcgcataaactttgaagtt |
41417732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 5542 - 5619
Alignment:
| Q |
25 |
acccttgatctgcataggtcaatttgatattgttcttgggagtaagtatgatcaccgatcaagttggtttgattacag |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||| ||| || ||||| |||||||| ||||| ||||||| |
|
|
| T |
5542 |
acccttgatctgcataggtcaatttgatattcttcttcggagcaaggatcatcacggatcaagtgggtttcattacag |
5619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University