View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15540_low_2 (Length: 687)

Name: NF15540_low_2
Description: NF15540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15540_low_2
NF15540_low_2
[»] chr1 (13 HSPs)
chr1 (1-674)||(24310019-24310695)
chr1 (1-201)||(24322304-24322510)
chr1 (171-674)||(24415769-24416257)
chr1 (259-674)||(24322842-24323249)
chr1 (247-674)||(24340472-24340893)
chr1 (247-674)||(24352837-24353258)
chr1 (72-287)||(24369399-24369613)
chr1 (499-674)||(24367472-24367644)
chr1 (29-210)||(24367026-24367204)
chr1 (10-239)||(24365193-24365417)
chr1 (79-195)||(24340337-24340450)
chr1 (79-195)||(24352702-24352815)
chr1 (358-464)||(24367334-24367440)
[»] chr5 (10 HSPs)
chr5 (342-614)||(42561975-42562235)
chr5 (549-616)||(9120117-9120184)
chr5 (357-445)||(29696401-29696489)
chr5 (145-190)||(29696198-29696243)
chr5 (549-599)||(179412-179462)
chr5 (79-115)||(29688025-29688061)
chr5 (145-188)||(179026-179069)
chr5 (500-539)||(29712161-29712200)
chr5 (145-187)||(29712513-29712555)
chr5 (561-613)||(29696602-29696654)
[»] chr4 (47 HSPs)
chr4 (66-613)||(49040795-49041330)
chr4 (65-464)||(48863129-48863525)
chr4 (549-614)||(7878737-7878802)
chr4 (500-613)||(48863573-48863683)
chr4 (556-614)||(7790441-7790499)
chr4 (556-614)||(7908663-7908721)
chr4 (549-614)||(7773467-7773532)
chr4 (504-614)||(48852993-48853100)
chr4 (549-617)||(49043807-49043875)
chr4 (554-613)||(48156072-48156131)
chr4 (556-614)||(7813838-7813896)
chr4 (561-614)||(7771761-7771814)
chr4 (4-117)||(45372192-45372305)
chr4 (554-611)||(48147358-48147415)
chr4 (32-117)||(48852530-48852615)
chr4 (352-445)||(49043994-49044087)
chr4 (29-117)||(50250913-50251001)
chr4 (562-614)||(50666682-50666734)
chr4 (151-190)||(7237767-7237806)
chr4 (151-190)||(7771396-7771435)
chr4 (151-190)||(7790081-7790120)
chr4 (555-614)||(48864395-48864454)
chr4 (29-116)||(48875710-48875797)
chr4 (79-208)||(48898633-48898759)
chr4 (555-614)||(49038520-49038579)
chr4 (150-209)||(50669052-50669111)
chr4 (556-614)||(7800998-7801056)
chr4 (153-195)||(7908325-7908367)
chr4 (500-606)||(48903260-48903366)
chr4 (150-195)||(37827024-37827069)
chr4 (549-614)||(45371716-45371781)
chr4 (357-434)||(48705198-48705275)
chr4 (4-117)||(48870381-48870494)
chr4 (4-117)||(48886067-48886180)
chr4 (561-613)||(7237386-7237438)
chr4 (151-195)||(7877727-7877771)
chr4 (150-185)||(7813474-7813509)
chr4 (150-185)||(7822963-7822998)
chr4 (150-209)||(48852663-48852722)
chr4 (556-614)||(7786825-7786883)
chr4 (554-600)||(45384548-45384594)
chr4 (79-117)||(48170703-48170741)
chr4 (29-115)||(50668916-50669002)
chr4 (144-181)||(7800625-7800662)
chr4 (565-614)||(37826632-37826681)
chr4 (549-617)||(49048194-49048262)
chr4 (150-206)||(50250809-50250865)
[»] chr3 (8 HSPs)
chr3 (16-125)||(47452022-47452131)
chr3 (554-613)||(11015134-11015193)
chr3 (556-613)||(11024146-11024203)
chr3 (150-209)||(11005978-11006037)
chr3 (150-209)||(11024553-11024612)
chr3 (556-613)||(11005571-11005628)
chr3 (549-586)||(47451570-47451607)
chr3 (352-433)||(47451717-47451798)
[»] chr8 (5 HSPs)
chr8 (150-197)||(12200304-12200351)
chr8 (150-197)||(12444732-12444779)
chr8 (153-209)||(12195300-12195356)
chr8 (153-209)||(12439728-12439784)
chr8 (556-600)||(15349244-15349288)
[»] chr7 (2 HSPs)
chr7 (549-614)||(48884178-48884243)
chr7 (150-208)||(48883798-48883856)
[»] chr6 (5 HSPs)
chr6 (150-190)||(21979682-21979722)
chr6 (561-600)||(21979284-21979323)
chr6 (31-117)||(21015672-21015758)
chr6 (549-611)||(21016175-21016237)
chr6 (340-392)||(21015978-21016030)
[»] scaffold0508 (1 HSPs)
scaffold0508 (4-52)||(12155-12203)


Alignment Details
Target: chr1 (Bit Score: 655; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Original strand, 24310019 - 24310695
Alignment:
Q  1 ctaaatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310019 ctaaatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagt 24310118  T
Q  101 tcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagttttagta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310119 tcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagttttagta 24310218  T
Q  201 tcctatgattgtattccaaactcacatgatgtgctatctcgcatttggattttttcaatgagagctaatgtgtgcaacgaaattgtgagtcctgcacatt 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310219 tcctatgattgtattccatactcacatgatgtgctatctcgcatttggattttttcaatgagagctaatgtgtgcaacgaaattgtgagtcctgcacatt 24310318  T
Q  301 tacctttttatagtgagctttctccttttgcttattctgtggtagagtccgtcttcaatggggctattcactggttggctattcgtcatgatgtatgcga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310319 tacctttttatagtgagctttctccttttgcttattctgtggtagagtccgtcttcaatggggctattcactggttggctattcgtcatgatgtatgcga 24310418  T
Q  401 gtatgttattgtttcctttcatttaattgaaaggatacttctagaaattcctctcccagatg---atgatgatgatattgaatatggttcgacagattgt 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  24310419 gtatgttattgtttcctttcatttaattgaaaggatacttctagaaattcctctcccagatgatcatgatgatgatattgaatatggttcgacagattgt 24310518  T
Q  498 agtttatgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctctt 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24310519 agtttatgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcttctt 24310618  T
Q  598 ggagtaaaactcttgtttttgatttgcataccatttcttacatttcccttgtatgttgtacaaaaagtggtgatatt 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310619 ggagtaaaactcttgtttttgatttgcataccatttcttacatttcccttgtatgttgtacaaaaagtggtgatatt 24310695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 24322304 - 24322510
Alignment:
Q  1 ctaaatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatgg------aatccatccac 94  Q
    |||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||| |||||||||||||||| |||||      ||||||||| |    
T  24322304 ctaaatcttattttgatcttaaagttagaggttcatgtagagggtatatattgttggagtttttttcaaacatttacctatggaaatggaatccatcccc 24322403  T
Q  95 cggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagtt 194  Q
    | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||    
T  24322404 ccgagttcatagacaaataccttcgcctcctctcaactattcacgtttaaatttctctagttttggatatgacgagtcaagagaggattacttggtagtt 24322503  T
Q  195 ttagtat 201  Q
    |||||||    
T  24322504 ttagtat 24322510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 171 - 674
Target Start/End: Original strand, 24415769 - 24416257
Alignment:
Q  171 tcaagagatgattacttggtagttttagtatcctatgattgtattccaaactcacatgatgtgctatctcgcatttggattttttcaatgagagctaatg 270  Q
    |||| ||| |||||||||||||||| ||||||||||      |||||||||||| ||||||||||||||||| |  ||||||| ||| ||||||||||||    
T  24415769 tcaaaagacgattacttggtagtttcagtatcctat------attccaaactcagatgatgtgctatctcgcttgaggattttctcattgagagctaatg 24415862  T
Q  271 tgtgcaacgaaattgtgagtcctgcacatttacctttttatagtgagct------ttctccttttgcttattctgtggtagagtccgtcttcaatggggc 364  Q
    |||| |||||||||||||||||| | ||||| |||| |   | |||| |      ||||  || || |||| ||||||||||||| ||||||||||||||    
T  24415863 tgtggaacgaaattgtgagtcctacccatttgccttgt---attgaggtcccgtgttctggttctgattatcctgtggtagagtcggtcttcaatggggc 24415959  T
Q  365 tattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaaggatacttctagaaattcctctcccagatgat 464  Q
    |||||| ||||| ||| | ||||||||  ||   || |   || |||   ||||||||||||  ||||||| ||||||||| ||||||||||||  ||||    
T  24415960 tattcattggttagctttccgtcatgagata---gatttctttgttgcagcctttcatttaacggaaaggaaacttctagagattcctctcccaagtgat 24416056  T
Q  465 gatgatgatattgaatatggttcgacagattgtagtttatgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatat 564  Q
             ||||||| | | || ||||||| |||||||||||||||||||||||||||||||||||||||| |||||    |||||| |||||||||||    
T  24416057 ---------attgaattttggtctacagattatagtttatgggtatttagaggatttctcagtctatgggttttgaggtttaaggatagagttgatatat 24416147  T
Q  565 gggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtttttgatttgcataccatttcttacatttcccttgtatgttgtacaaaaag 664  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||||||| |  |  || |||||||| ||  ||||||||   | ||||||||||||||    
T  24416148 gggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttctcaacatggataccattcctcgcatttcccccatttgttgtacaaaaag 24416247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 259 - 674
Target Start/End: Original strand, 24322842 - 24323249
Alignment:
Q  259 tgagagctaatgtgtgcaacgaaattgtgagtcctgcacatttaccttttta-tagtgagctttctccttttgcttattctgtggtagagtccgtcttca 357  Q
    |||||||||||| ||| |||||||||||| ||||| ||||||| |||||||  |||| | |||||||| ||  ||||||||||||||||||| |||||||    
T  24322842 tgagagctaatgcgtggaacgaaattgtgggtcctacacatttgccttttttgtagtaa-ctttctcccttcacttattctgtggtagagtcggtcttca 24322940  T
Q  358 atggggctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaaggatacttctagaaattcctctccc 457  Q
    | ||||||||||||||||||||| |  ||| ||||| |   |||||| ||| |||| ||||| || |||| ||||| | | || |||| |||||| |||     
T  24322941 acggggctattcactggttggctttaagtcctgatgcacatgagtatcttactgttgcctttgatctaatggaaagaaaatttgtagagattcctttcct 24323040  T
Q  458 agatgatgatgatgatattgaatatggttcgacagattgtagtttatgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagtt 557  Q
    |||||||         |||||   || ||||| ||||| | |||||||||||||||||||||||| ||||||||||||| ||  ||||  || |||||||    
T  24323041 agatgat---------attga---tgtttcgaaagattatggtttatgggtatttagaggatttcccagtctatgggttttggaggacttgggtaaagtt 24323128  T
Q  558 gatatatggg----tgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtttttgatttgcataccatttcttacatttcccttgtatgt 653  Q
    ||||||||||    ||||||||||||||||||||||||| |||| || ||||||||||||| ||||||||| |||||||  |  | ||||||||||||||    
T  24323129 gatatatgggtgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttcttgatttgcttaccattcatggcgtttcccttgtatgt 24323228  T
Q  654 tgtacaaaaagtggtgatatt 674  Q
    |||||||||||||||||||||    
T  24323229 tgtacaaaaagtggtgatatt 24323249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 247 - 674
Target Start/End: Original strand, 24340472 - 24340893
Alignment:
Q  247 ggattttttcaatgagagctaatgtgtgcaacgaaattgtgagtcctgcacatttacctttttatagtgagctttctccttttgcttattctgtggtaga 346  Q
    ||||||| ||| |||||||||||| ||| |||||||||||||| ||| | ||||| ||||||| |||| ||   ||||| |||| |||| |  | |||||    
T  24340472 ggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagtaagtcctctccctttgtttatcccttagtaga 24340571  T
Q  347 gtccgtcttcaatggggctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaaggatacttctagaa 446  Q
    ||| |||||||| || |||||||||||||||||| |   | |||||  |   || ||| || ||||| ||||| | ||| | ||||||| |||| ||||     
T  24340572 gtcggtcttcaacggagctattcactggttggctttcaattatgatacacatgaatatcttgttgttgcctttgaattagtcgaaaggaaacttgtagag 24340671  T
Q  447 attcctctcccagatgatgatgatgatattgaatatggttcgacagattgtagtttatgggtatttagaggatttctcagtctatgggttatgagggacg 546  Q
    ||||||||||||||||||          ||||  ||||||  || | |||| |||||||||||| |||||||||||| |||||||||||||||  ||| |    
T  24340672 attcctctcccagatgatt---------ttgaccatggttatacggtttgtggtttatgggtatgtagaggatttctaagtctatgggttatggtggatg 24340762  T
Q  547 aggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtttt---tgatttgcataccatttcttacatttc 643  Q
    ||||||  |||||||| ||||| ||||||||||| ||||||||||| ||||||| ||||||||||||| |   |  ||   ||||||||  | |  ||||    
T  24340763 aggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttcttactacttatgataccattcataatgtttc 24340862  T
Q  644 ccttgtatgttgtacaaaaagtggtgatatt 674  Q
    ||||||||||||||||| |||||||||||||    
T  24340863 ccttgtatgttgtacaacaagtggtgatatt 24340893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 247 - 674
Target Start/End: Original strand, 24352837 - 24353258
Alignment:
Q  247 ggattttttcaatgagagctaatgtgtgcaacgaaattgtgagtcctgcacatttacctttttatagtgagctttctccttttgcttattctgtggtaga 346  Q
    ||||||| ||| |||||||||||| ||| |||||||||||||| ||| | ||||| ||||||| |||| ||   ||||| |||| |||| |  | |||||    
T  24352837 ggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagtaagtcctctccctttgtttatcccttagtaga 24352936  T
Q  347 gtccgtcttcaatggggctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaaggatacttctagaa 446  Q
    ||| |||||||| || |||||||||||||||||| |   | |||||  |   || ||| || ||||| ||||| | ||| | ||||||| |||| ||||     
T  24352937 gtcggtcttcaacggagctattcactggttggctttcaattatgatacacatgaatatcttgttgttgcctttgaattagtcgaaaggaaacttgtagag 24353036  T
Q  447 attcctctcccagatgatgatgatgatattgaatatggttcgacagattgtagtttatgggtatttagaggatttctcagtctatgggttatgagggacg 546  Q
    ||||||||||||||||||          ||||  ||||||  || | |||| |||||||||||| |||||||||||| |||||||||||||||  ||| |    
T  24353037 attcctctcccagatgatt---------ttgaccatggttatacggtttgtggtttatgggtatgtagaggatttctaagtctatgggttatggtggatg 24353127  T
Q  547 aggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtttt---tgatttgcataccatttcttacatttc 643  Q
    ||||||  |||||||| ||||| ||||||||||| ||||||||||| ||||||| ||||||||||||| |   |  ||   ||||||||  | |  ||||    
T  24353128 aggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttcttactacttatgataccattcataatgtttc 24353227  T
Q  644 ccttgtatgttgtacaaaaagtggtgatatt 674  Q
    ||||||||||||||||| |||||||||||||    
T  24353228 ccttgtatgttgtacaacaagtggtgatatt 24353258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 72 - 287
Target Start/End: Original strand, 24369399 - 24369613
Alignment:
Q  72 atttacgtatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagt 171  Q
    |||||| |||||||| | || ||| | |||||||||||||||||||||| |||||| ||| |||||||||||  ||  ||||||||||| ||||||||||    
T  24369399 atttacttatggaatacgtctaccagggttcatagacaaataccttcgcttcctcctaatcattcacgtttaccttcttatggttttggctatgacgagt 24369498  T
Q  172 caagagatgattacttggtagttttagtatcctatgattgtattccaaactcacatgatgtgctatctcgcatttgg-attttttcaatgagagctaatg 270  Q
    ||| |||||||||| |||| |||| |||||||||||||| ||||||||  ||| ||||||||  || || |||||||   ||||||| || |||||||||    
T  24369499 caacagatgattacctggtggtttcagtatcctatgattatattccaagttcatatgatgtg--atatcccatttggcgatttttcattgtgagctaatg 24369596  T
Q  271 tgtgcaacgaaattgtg 287  Q
    |||| || |||||||||    
T  24369597 tgtggaaggaaattgtg 24369613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 499 - 674
Target Start/End: Original strand, 24367472 - 24367644
Alignment:
Q  499 gtttatgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttg 598  Q
    |||||||||||||||||||||||||||||||||||||| |||||   ||| ||| | || |||||||||| ||| |||||||||||||||| || |||||    
T  24367472 gtttatgggtatttagaggatttctcagtctatgggttttgagga--gag-atacactttatatatgggtaatggaagaatacaaagtgcattcgtcttg 24367568  T
Q  599 gagtaaaactcttgtttttgatttgcataccatttcttacatttcccttgtatgttgtacaaaaagtggtgatatt 674  Q
    || ||||||||||||| |   | || |||||||| ||  ||||| || | ||||||||||||||| ||||||||||    
T  24367569 gactaaaactcttgttctaactatggataccattcctcgcattttccctatatgttgtacaaaaactggtgatatt 24367644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 24367026 - 24367204
Alignment:
Q  29 aggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaataccttcgcctcctccc 128  Q
    |||||||||| |||| |||||||||||| | | || ||||||||||||| ||||||| ||||||||| |||||||||| ||| |||||| ||||| |       
T  24367026 aggttcatgtcgagggtttatattgttgcactcttcttcaaacatttacctatggaacccatccaccagagttcataggcaattacctttgcctctt--- 24367122  T
Q  129 aattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgatt 210  Q
    ||| ||| |  |  | |||||||||||||||| |||||| |||||| ||||||||||||||| ||||   ||||||||||||    
T  24367123 aatcatttatatgcagatttctatggttttgggtatgacaagtcaacagatgattacttggtggtttcgttatcctatgatt 24367204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 24365193 - 24365417
Alignment:
Q  10 attttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagaca 109  Q
    |||||||||||||| ||||||||||||||||||| || ||||| ||| | | || | ||||| ||||  |||||||||||||||  ||||||||||| ||    
T  24365193 attttgatcttaaaattataggttcatgtagagggttcatatttttgtactcttatccaaacttttagctatggaatccatccaatggagttcataggca 24365292  T
Q  110 aataccttcgcctcctcccaattattcacgtttaaatttctatggtttt-ggttatgacgagtcaagagatgattacttggtagttttagtatcctatga 208  Q
    ||||| ||       | | |||  ||||| ||| || |||||||||||| ||| ||||| ||||||  || ||||||||||| |||| | ||||||| ||    
T  24365293 aatacttt------attctaatctttcacatttcaaattctatggttttgggtaatgacaagtcaatggacgattacttggtggtttcactatcctacga 24365386  T
Q  209 ttgtattccaaactcacatgatgtgctatct 239  Q
    || ||||| |||||||  |||||||||||||    
T  24365387 ttatattcaaaactcaggtgatgtgctatct 24365417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 24340337 - 24340450
Alignment:
Q  79 tatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagaga 178  Q
    |||||||||||||||||||| ||| ||||||||||||||  ||||||   |||  ||||  ||||| ||| ||||||||||| |||||||| |||| | |    
T  24340337 tatggaatccatccaccggatttcttagacaaatacctttccctcct---aatgtttcaaatttaattttttatggttttgggtatgacgaatcaacata 24340433  T
Q  179 tgattacttggtagttt 195  Q
    |||||||||||| ||||    
T  24340434 tgattacttggtggttt 24340450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 24352702 - 24352815
Alignment:
Q  79 tatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagaga 178  Q
    |||||||||||||||||||| ||| ||||||||||||||  ||||||   |||  ||||  ||||| ||| ||||||||||| |||||||| |||| | |    
T  24352702 tatggaatccatccaccggatttcttagacaaatacctttccctcct---aatgtttcaaatttaattttttatggttttgggtatgacgaatcaacata 24352798  T
Q  179 tgattacttggtagttt 195  Q
    |||||||||||| ||||    
T  24352799 tgattacttggtggttt 24352815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 358 - 464
Target Start/End: Original strand, 24367334 - 24367440
Alignment:
Q  358 atggggctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaaggatacttctagaaattcctctccc 457  Q
    |||||||||||||||||||| || ||||| ||||| || | |   ||||||||||| |||||| |||||| ||||||| |||||| || |||||||||||    
T  24367334 atggggctattcactggttgacttttcgttatgatatacgtgtcaatgttattgttgcctttcttttaatggaaaggaaacttctcgatattcctctccc 24367433  T
Q  458 agatgat 464  Q
    || ||||    
T  24367434 agttgat 24367440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 342 - 614
Target Start/End: Complemental strand, 42562235 - 42561975
Alignment:
Q  342 gtagagtccgtcttcaatggggctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaaggatacttc 441  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||  ||  ||||||||||| ||||||||||||  ||||||| |||||    
T  42562235 gtagagtcgttcttcaatggggctattcactggttggctcttcgtcatgatatatatgaccatgttattgttgcctttcatttaacggaaaggaaacttc 42562136  T
Q  442 tagaaattcctctcccagatgatgatgatgatattgaatatggttcgacagattgtagtttatgggtatttagaggatttctcagtctatgggttatgag 541  Q
    |||| |||| ||| |||       ||  ||||||| | |||  ||| | || |||| |||| |||||||||||||||||||||||||||||| || ||||    
T  42562135 tagagattcttcttcca-------at--tgatattaattataattccaaaggttgtggtttttgggtatttagaggatttctcagtctatggattttgag 42562045  T
Q  542 ggacgaggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    ||||||   ||| ||||||||||||||||||||||||||||||||||| || ||||||| ||| | |||||||    
T  42562044 ggacga---taatgttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgtt 42561975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 549 - 616
Target Start/End: Original strand, 9120117 - 9120184
Alignment:
Q  549 gataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtttt 616  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  9120117 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgtttt 9120184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 357 - 445
Target Start/End: Original strand, 29696401 - 29696489
Alignment:
Q  357 aatggggctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaaggatacttctaga 445  Q
    |||||||||||||||||||||||| ||||| ||||| |||    |  |||||||||| ||||||||||||||||||||| |||||||||    
T  29696401 aatggggctattcactggttggcttttcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaacttctaga 29696489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 29696198 - 29696243
Alignment:
Q  145 atttctatggttttggttatgacgagtcaagagatgattacttggt 190  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||    
T  29696198 atttctatggttttgggtatgacgagtcaacagatgattacttggt 29696243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 599
Target Start/End: Original strand, 179412 - 179462
Alignment:
Q  549 gataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttgg 599  Q
    |||| |||||| ||||||||||||||||||||||||||||| || ||||||    
T  179412 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 29688025 - 29688061
Alignment:
Q  79 tatggaatccatccaccggagttcatagacaaatacc 115  Q
    ||||||||||||||||||||||||| |||||||||||    
T  29688025 tatggaatccatccaccggagttcacagacaaatacc 29688061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 179026 - 179069
Alignment:
Q  145 atttctatggttttggttatgacgagtcaagagatgattacttg 188  Q
    |||||||||||||||| ||||| ||||||| |||||||||||||    
T  179026 atttctatggttttgggtatgaggagtcaacagatgattacttg 179069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 539
Target Start/End: Complemental strand, 29712200 - 29712161
Alignment:
Q  500 tttatgggtatttagaggatttctcagtctatgggttatg 539  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  29712200 tttatgggtatttagaggatgtctcagtctatgggatatg 29712161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 29712555 - 29712513
Alignment:
Q  145 atttctatggttttggttatgacgagtcaagagatgattactt 187  Q
    |||| ||||||||||| |||||||||||||| |||||||||||    
T  29712555 atttatatggttttgggtatgacgagtcaagggatgattactt 29712513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 561 - 613
Target Start/End: Original strand, 29696602 - 29696654
Alignment:
Q  561 atatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgt 613  Q
    |||||||||||| || ||||||| ||||| |||||||||| ||| ||||||||    
T  29696602 atatgggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgt 29696654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 66 - 613
Target Start/End: Complemental strand, 49041330 - 49040795
Alignment:
Q  66 tcaaacat-ttacgtatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttat 164  Q
    |||||||| |||| ||||||| ||||||||||||| ||| | || |||||||| |||||||    || ||| ||  |||||||||||||||||||| |||    
T  49041330 tcaaacatcttacctatggaacccatccaccggagctcacaaactaatacctttgcctcctaatcatgatt-ac--ttaaatttctatggttttgggtat 49041234  T
Q  165 gacgagtcaagagatgattacttggtagttttagtatcctatgattgtattccaaactcacatgatgtgctatctcgcatttggattttttcaatgagag 264  Q
    ||   ||||| ||||||||||||| | |||| |||||| |||||| ||||||| |||||| ||||  ||||||| | | |   |||||| ||| ||| ||    
T  49041233 gatccgtcaacagatgattacttgatggtttcagtatcgtatgatagtattccgaactcagatgacatgctatcccacttggagattttctcattgaaag 49041134  T
Q  265 ctaatgtgtgcaacgaaattgtgagtcctgcacatttacctttttatagtgagct-ttctccttttgcttattctgtggtagagtccgtcttcaatgggg 363  Q
    |||||||||| || ||||||||| || ||   ||||  ||||||| |||| || |  | |||| ||  |||| |  ||||||| ||  ||||||| ||||    
T  49041133 ctaatgtgtggaaggaaattgtgggtactatccattggcctttttgtagtaaggtcgtttcctctt-attatcccatggtagactcgttcttcaacgggg 49041035  T
Q  364 ctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtt-tcctttcatttaat-tgaaaggatacttctagaaattcctctcccagat 461  Q
    ||||||| ||||||||| ||||||||||| |||| |  |||||||||||| ||||||||||||||  ||||||  |||||||   || |||||||||       
T  49041034 ctattcattggttggcttttcgtcatgatatatgtgtttatgttattgttgtcctttcatttaataggaaagggaacttctattgatacctctccca--- 49040938  T
Q  462 gatgatgatgatattgaatatggttcgacagattgtagtttatgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgata 561  Q
          |||||||||||| ||| ||| |  ||| ||  |||||||||||||| ||||||||||||||||||||||  | ||   ||  |||  |||||||    
T  49040937 ------gatgatattgaaaatgattctaatgatcgtgatttatgggtatttaaaggatttctcagtctatgggtttcgggg---gatcatacggttgata 49040847  T
Q  562 tatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgt 613  Q
    ||||||||||| |||||||   |||||| || ||||||| ||||| ||||||    
T  49040846 tatgggtgatggaagaatatggagtgcattcatcttggattaaaattcttgt 49040795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 65 - 464
Target Start/End: Original strand, 48863129 - 48863525
Alignment:
Q  65 ttcaaacatttacgtatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttat 164  Q
    ||||||||| ||| ||||||||||||||||||||| ||| | |||||||||||||||||||   ||| |||    ||||||||||   |||||||| |||    
T  48863129 ttcaaacatctacctatggaatccatccaccggagctcagaaacaaataccttcgcctcct---aatgattattatttaaatttcgccggttttgggtat 48863225  T
Q  165 gacgagtcaagagatgattacttggtagttttagtatcctatgattgtattccaaactcacatgatgtgctatctcgcatttggattttttcaatgagag 264  Q
    ||   ||||  ||||||||||||||| |||| |||||| |||||| |||||||||||||| ||||   |||||| | | |   ||||||  || ||| ||    
T  48863226 gatccgtcagaagatgattacttggtggtttcagtatcgtatgatagtattccaaactcagatgacaagctatcccacttggagattttcacattgaaag 48863325  T
Q  265 ctaatgtgtgcaacgaaattgtgagtcctgcacatttacctttttatagtgagctt-tctccttttgcttattctgtggtagagtccgtcttcaatgggg 363  Q
    |||||||||| || |||| |||| || || | ||||  |||| || |||| || || | |||| ||  |||| |  ||||||| ||| ||||||| ||||    
T  48863326 ctaatgtgtggaaggaaactgtgggtactacccattggccttattgtagtaagattgtttcctctt-attatcccatggtagactccttcttcaacgggg 48863424  T
Q  364 ctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaaggatacttctagaaattcctctcccagatga 463  Q
    ||||||| ||||||||| ||||||||||| || | |  |||||||||||| |||||| |||||  ||||||  |||||||   || ||||||| ||||||    
T  48863425 ctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgcctttcgtttaacggaaagggaacttctattgatacctctcctagatga 48863524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 549 - 614
Target Start/End: Original strand, 7878737 - 7878802
Alignment:
Q  549 gataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    |||| |||||| ||||||||||||||||||||||||||||| || ||||||| |||||||||||||    
T  7878737 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgtt 7878802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 500 - 613
Target Start/End: Original strand, 48863573 - 48863683
Alignment:
Q  500 tttatgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttgg 599  Q
    |||||||||||||||||||| ||||||||||||||||  | ||||  |   ||| ||||| |||||||||||| ||||||||  |||||| || ||||||    
T  48863573 tttatgggtatttagaggatctctcagtctatgggtttcgggggatca---taaggttgacatatgggtgatggaagaatacggagtgcattcatcttgg 48863669  T
Q  600 agtaaaactcttgt 613  Q
    | ||||||||||||    
T  48863670 attaaaactcttgt 48863683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 556 - 614
Target Start/End: Original strand, 7790441 - 7790499
Alignment:
Q  556 ttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    |||| ||||||||||||||||||||||||||||| || ||||||| |||||||||||||    
T  7790441 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgtt 7790499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 556 - 614
Target Start/End: Original strand, 7908663 - 7908721
Alignment:
Q  556 ttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    |||| ||||||||||||||||||||||||||||| || ||||||| |||||||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgtt 7908721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 549 - 614
Target Start/End: Complemental strand, 7773532 - 7773467
Alignment:
Q  549 gataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    |||| |||||| ||||||||||||||||||||||||||||| || ||||||| |||| ||||||||    
T  7773532 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgtt 7773467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 504 - 614
Target Start/End: Original strand, 48852993 - 48853100
Alignment:
Q  504 tgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagta 603  Q
    ||||||||||||| |||||| ||| ||||||| ||| |||| ||   || |||||| |||||||| |||||||||||||||||||  || ||||||| ||    
T  48852993 tgggtatttagagaatttctaagtatatgggtcatgggggatga---tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggacta 48853089  T
Q  604 aaactcttgtt 614  Q
    | |||||||||    
T  48853090 agactcttgtt 48853100  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 549 - 617
Target Start/End: Complemental strand, 49043875 - 49043807
Alignment:
Q  549 gataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgttttt 617  Q
    |||| |||||| ||||||||||||||||||||||||||||| || || |||| ||| ||||||||||||    
T  49043875 gatatagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttt 49043807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 554 - 613
Target Start/End: Complemental strand, 48156131 - 48156072
Alignment:
Q  554 agttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgt 613  Q
    |||||| |||||||||||||| |||||||||||||| || ||||||| ||||||||||||    
T  48156131 agttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgt 48156072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 614
Target Start/End: Original strand, 7813838 - 7813896
Alignment:
Q  556 ttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||| |||||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgtt 7813896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 614
Target Start/End: Original strand, 7771761 - 7771814
Alignment:
Q  561 atatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    ||||||||||||||||||||||||||||| || || |||| |||||||||||||    
T  7771761 atatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgtt 7771814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 45372305 - 45372192
Alignment:
Q  4 aatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttca 103  Q
    ||||||||||||||||| || ||| ||||||||||||||| |||||||| ||| |  ||  ||||| | | ||  |||||||||||||||| || |||||    
T  45372305 aatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgcatggtaattcaaccttctatctatggaatccatccactggtgttca 45372206  T
Q  104 tagacaaatacctt 117  Q
     | |||||||||||    
T  45372205 gaaacaaatacctt 45372192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 554 - 611
Target Start/End: Complemental strand, 48147415 - 48147358
Alignment:
Q  554 agttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactctt 611  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||| ||| ||||||    
T  48147415 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 48852530 - 48852615
Alignment:
Q  32 ttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacctt 117  Q
    |||||||||||| |||||||| ||| |  ||| |||| | |||||  ||||||||||||||||||||||||| | |||||||||||    
T  48852530 ttcatgtagaggctttatatttttgcaccgttcttcagagatttatctatggaatccatccaccggagttcacaaacaaatacctt 48852615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 445
Target Start/End: Complemental strand, 49044087 - 49043994
Alignment:
Q  352 tcttcaatggggctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaaggatacttctaga 445  Q
    |||| |||||||||||||||||||||||| ||| || |||| |||    | ||||||||||| ||||| ||||||||||||||| |||| ||||    
T  49044087 tctttaatggggctattcactggttggcttttcatcttgatttatcaatgaatgttattgttgcctttgatttaattgaaaggaaacttttaga 49043994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 50251001 - 50250913
Alignment:
Q  29 aggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacctt 117  Q
    ||||||||||||||| |||||||| ||  | |||||||||| | | ||| |||||||||||||||||||  |||| | |||||||||||    
T  50251001 aggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctt 50250913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 614
Target Start/End: Original strand, 50666682 - 50666734
Alignment:
Q  562 tatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    ||||||||||| |||||||||||||||| || ||||||| |||||||||||||    
T  50666682 tatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 7237806 - 7237767
Alignment:
Q  151 atggttttggttatgacgagtcaagagatgattacttggt 190  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggt 7237767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 7771396 - 7771435
Alignment:
Q  151 atggttttggttatgacgagtcaagagatgattacttggt 190  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggt 7771435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 7790081 - 7790120
Alignment:
Q  151 atggttttggttatgacgagtcaagagatgattacttggt 190  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggt 7790120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 614
Target Start/End: Original strand, 48864395 - 48864454
Alignment:
Q  555 gttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||| ||| | |||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgtt 48864454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 48875710 - 48875797
Alignment:
Q  29 aggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacct 116  Q
    |||||| || ||||| |||||| ||||| | |||||||||| | | ||| |||||||||||||||||||| |||| | ||||||||||    
T  48875710 aggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaacaaatacct 48875797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 48898633 - 48898759
Alignment:
Q  79 tatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagaga 178  Q
    ||||||||||||||||||||| ||| | ||||||||||| | |||||    ||| |||   |||| |||||||||||||||| |||||  ||| || |||    
T  48898633 tatggaatccatccaccggagctcacaaacaaatacctttgtctcctaatcatttttc---tttatatttctatggttttgggtatgatcagttaacaga 48898729  T
Q  179 tgattacttggtagttttagtatcctatga 208  Q
    ||||||||| || |||||| | ||||||||    
T  48898730 tgattacttagtggttttattgtcctatga 48898759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 614
Target Start/End: Complemental strand, 49038579 - 49038520
Alignment:
Q  555 gttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    ||||| |||||||||||||||||||||||||| || || ||||||| ||| |||||||||    
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgtt 49038520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 50669052 - 50669111
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgat 209  Q
    ||||||||||||||||||  ||||||||||||||||||||| |||| | | |||||||||    
T  50669052 tatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgat 50669111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 614
Target Start/End: Original strand, 7800998 - 7801056
Alignment:
Q  556 ttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    |||| ||||||||| ||||||| ||||||||||| || ||||||| |||||||||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 7801056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 7908325 - 7908367
Alignment:
Q  153 ggttttggttatgacgagtcaagagatgattacttggtagttt 195  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggttt 7908367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 500 - 606
Target Start/End: Original strand, 48903260 - 48903366
Alignment:
Q  500 tttatgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttgg 599  Q
    ||||||||||||| ||| |||||| || ||||||| | ||    ||||  ||||| |||| ||||||||||||||||||||||||||||| |  ||||||    
T  48903260 tttatgggtatttggagaatttcttagcctatgggctttggattacgataataaatttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttgg 48903359  T
Q  600 agtaaaa 606  Q
    | |||||    
T  48903360 actaaaa 48903366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 37827069 - 37827024
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttt 195  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||    
T  37827069 tatggttttggttatgaccagtctagagatgattacttggttgttt 37827024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 614
Target Start/End: Complemental strand, 45371781 - 45371716
Alignment:
Q  549 gataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    |||| |||||| |||||||| |||||||||||||||||||| || ||||||| ||| ||| |||||    
T  45371781 gatacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgtt 45371716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 434
Target Start/End: Complemental strand, 48705275 - 48705198
Alignment:
Q  357 aatggggctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaagg 434  Q
    |||||||||||||| |||||||||  |||||||||| || |  || ||||||||||| ||||| ||||||| ||||||    
T  48705275 aatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagg 48705198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 48870381 - 48870494
Alignment:
Q  4 aatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttca 103  Q
    ||||| ||| |||| || || ||| ||||||||||||||| |||||||| ||| | |||  | ||| | | ||| |||||||||||||||||||| ||||    
T  48870381 aatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttca 48870480  T
Q  104 tagacaaatacctt 117  Q
     | |||||||||||    
T  48870481 caaacaaatacctt 48870494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 48886067 - 48886180
Alignment:
Q  4 aatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttca 103  Q
    ||||| ||| |||| || || ||| ||||||||||||||| |||||||| ||| | |||  | ||| | | ||| |||||||||||||||||||| ||||    
T  48886067 aatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttca 48886166  T
Q  104 tagacaaatacctt 117  Q
     | |||||||||||    
T  48886167 caaacaaatacctt 48886180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 613
Target Start/End: Complemental strand, 7237438 - 7237386
Alignment:
Q  561 atatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgt 613  Q
    |||||||||||||||||||||||| |||| || | ||||| ||||||||||||    
T  7237438 atatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 7877727 - 7877771
Alignment:
Q  151 atggttttggttatgacgagtcaagagatgattacttggtagttt 195  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggttt 7877771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 7813474 - 7813509
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattac 185  Q
    |||||||||||||||||| |||||||||||||||||    
T  7813474 tatggttttggttatgaccagtcaagagatgattac 7813509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 7822963 - 7822998
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattac 185  Q
    |||||||||||||||||| |||||||||||||||||    
T  7822963 tatggttttggttatgaccagtcaagagatgattac 7822998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 48852663 - 48852722
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgat 209  Q
    ||||||||||| ||||||  |||||  ||||||||||||||||||||| | |||||||||    
T  48852663 tatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctatgat 48852722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 614
Target Start/End: Original strand, 7786825 - 7786883
Alignment:
Q  556 ttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    |||| ||||||||||||||||||||||| ||||| |  ||||||| ||| |||||||||    
T  7786825 ttgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgtt 7786883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 600
Target Start/End: Complemental strand, 45384594 - 45384548
Alignment:
Q  554 agttgatatatgggtgatgaaagaatacaaagtgcagtcctcttgga 600  Q
    |||||| |||||||||||||||||||| |||||||| || |||||||    
T  45384594 agttgaaatatgggtgatgaaagaatataaagtgcattcgtcttgga 45384548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 48170741 - 48170703
Alignment:
Q  79 tatggaatccatccaccggagttcatagacaaatacctt 117  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  48170741 tatggaatccatccacccgagttcataaacaaatacctt 48170703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 50668916 - 50669002
Alignment:
Q  29 aggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacc 115  Q
    |||||| |||||||| |||||||| ||| | |||| ||| ||||| | | ||||||||||||||||| || |||||| ||| |||||    
T  50668916 aggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacagatacc 50669002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 7800625 - 7800662
Alignment:
Q  144 aatttctatggttttggttatgacgagtcaagagatga 181  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  7800625 aatttatatggttttggttatgaccagtcaagagatga 7800662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 614
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  565 gggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    |||||||||||||||||||| |||| || ||||||| ||| |||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 549 - 617
Target Start/End: Complemental strand, 49048262 - 49048194
Alignment:
Q  549 gataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgttttt 617  Q
    |||| |||||| ||||||||||||||||| || |||||||| || || |||| ||| ||| ||||||||    
T  49048262 gatatagttgaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgttttt 49048194  T

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Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 50250865 - 50250809
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctat 206  Q
    |||||||||||||||||| | |||| ||||||||| ||||| |||| | ||||||||    
T  50250865 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 50250809  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 47452131 - 47452022
Alignment:
Q  16 atcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacc 115  Q
    ||||| || ||| ||||||||||||||| |||||| | ||    |||| ||||||||| ||| |||||||||||||||| |||||||| | |||||||||    
T  47452131 atcttgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacc 47452032  T
Q  116 ttcgcctcct 125  Q
    || |||||||    
T  47452031 tttgcctcct 47452022  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 554 - 613
Target Start/End: Complemental strand, 11015193 - 11015134
Alignment:
Q  554 agttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgt 613  Q
    |||||| |||||||| |||||||||||||||||||| || ||||||  ||||||||||||    
T  11015193 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 11015134  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 613
Target Start/End: Complemental strand, 11024203 - 11024146
Alignment:
Q  556 ttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgt 613  Q
    |||| |||||||| |||||||||||||||||||| || ||||||| ||| ||||||||    
T  11024203 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 11006037 - 11005978
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgat 209  Q
    ||||||||||| |||||| | |||||||||||||||||||| || | ||| |||||||||    
T  11006037 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 11005978  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 11024612 - 11024553
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgat 209  Q
    ||||||||||| |||||| | |||||||||||||||||||| || | ||| |||||||||    
T  11024612 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 11024553  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 613
Target Start/End: Complemental strand, 11005628 - 11005571
Alignment:
Q  556 ttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgt 613  Q
    |||| |||||||| |||||||||||||||||||| || ||||||| |||  |||||||    
T  11005628 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgt 11005571  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 586
Target Start/End: Complemental strand, 47451607 - 47451570
Alignment:
Q  549 gataaagttgatatatgggtgatgaaagaatacaaagt 586  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  47451607 gatatagttgaaatatgggtgatgaaagaatacaaagt 47451570  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 47451798 - 47451717
Alignment:
Q  352 tcttcaatggggctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaag 433  Q
    ||||||||||||||||| | ||||||||| ||||||||||| ||| |  | ||||||||| | | ||| ||||||| |||||    
T  47451798 tcttcaatggggctatttattggttggcttttcgtcatgatatatccatgaatgttattgctgcatttgatttaatggaaag 47451717  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 12200304 - 12200351
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagtttta 197  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  12200304 tatggttttggttatgaccggtcaagagatgattacttggtggtttta 12200351  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 12444732 - 12444779
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagtttta 197  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  12444732 tatggttttggttatgaccggtcaagagatgattacttggtggtttta 12444779  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 12195300 - 12195356
Alignment:
Q  153 ggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgat 209  Q
    ||||||||||||||||  | |||||||||||||||||| |||||| | |||||||||    
T  12195300 ggttttggttatgacggattaagagatgattacttggtcgttttattgtcctatgat 12195356  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 12439728 - 12439784
Alignment:
Q  153 ggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgat 209  Q
    ||||||||||||||||  | |||||||||||||||||| |||||| | |||||||||    
T  12439728 ggttttggttatgacggattaagagatgattacttggtcgttttattgtcctatgat 12439784  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 556 - 600
Target Start/End: Original strand, 15349244 - 15349288
Alignment:
Q  556 ttgatatatgggtgatgaaagaatacaaagtgcagtcctcttgga 600  Q
    |||| ||||||||||||||||||||||||||| | || |||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttgga 15349288  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 614
Target Start/End: Original strand, 48884178 - 48884243
Alignment:
Q  549 gataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactcttgtt 614  Q
    ||||||||||| |||| ||||||||||||||||||||||||    ||||||| ||| |||||||||    
T  48884178 gataaagttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgtt 48884243  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 48883798 - 48883856
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatga 208  Q
    ||||||||||||||||||  |||||||||||||||| |||| |||| | | ||||||||    
T  48883798 tatggttttggttatgacccgtcaagagatgattacatggtggtttcaatgtcctatga 48883856  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 21979722 - 21979682
Alignment:
Q  150 tatggttttggttatgacgagtcaagagatgattacttggt 190  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  21979722 tatggttttggttatgaccagtcaagaaatgattacttggt 21979682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 600
Target Start/End: Complemental strand, 21979323 - 21979284
Alignment:
Q  561 atatgggtgatgaaagaatacaaagtgcagtcctcttgga 600  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  21979323 atatgggtgatgaaagaatacaaagtgcgttcctcttgga 21979284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 21015672 - 21015758
Alignment:
Q  31 gttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacctt 117  Q
    ||||||||||||| |||||||| ||| |   |  ||||||||| ||| ||||||||||||||||  ||||||| | |||||||||||    
T  21015672 gttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctt 21015758  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 611
Target Start/End: Original strand, 21016175 - 21016237
Alignment:
Q  549 gataaagttgatatatgggtgatgaaagaatacaaagtgcagtcctcttggagtaaaactctt 611  Q
    |||| |||||| |||||||| ||||||||||||||||| || || ||||||| ||| ||||||    
T  21016175 gatatagttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactctt 21016237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 21015978 - 21016030
Alignment:
Q  340 tggtagagtccgtcttcaatggggctattcactggttggctattcgtcatgat 392  Q
    |||||| ||| || || |||||||||||||| ||||||||| |||||||||||    
T  21015978 tggtagggtcggtttttaatggggctattcattggttggcttttcgtcatgat 21016030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 12155 - 12203
Alignment:
Q  4 aatctcattttgatcttaaagttataggttcatgtagaggttttatatt 52  Q
    ||||||||||||||||| || ||| ||||||||||||| | ||||||||    
T  12155 aatctcattttgatcttcaaattaaaggttcatgtagaaggtttatatt 12203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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