View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15540_low_3 (Length: 588)

Name: NF15540_low_3
Description: NF15540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15540_low_3
NF15540_low_3
[»] chr2 (2 HSPs)
chr2 (18-522)||(4419778-4420282)
chr2 (346-447)||(4417909-4418010)
[»] chr1 (11 HSPs)
chr1 (383-519)||(30629519-30629655)
chr1 (383-514)||(30623888-30624019)
chr1 (472-522)||(40444682-40444732)
chr1 (394-504)||(30641730-30641840)
chr1 (386-444)||(30689730-30689788)
chr1 (386-448)||(30698616-30698678)
chr1 (386-444)||(30718773-30718831)
chr1 (476-519)||(18652894-18652937)
chr1 (386-444)||(30671835-30671893)
chr1 (386-444)||(30710499-30710557)
chr1 (383-456)||(18709026-18709099)
[»] chr3 (1 HSPs)
chr3 (384-441)||(33469977-33470034)
[»] chr7 (4 HSPs)
chr7 (463-519)||(38809648-38809704)
chr7 (394-519)||(38822597-38822722)
chr7 (395-437)||(38830756-38830798)
chr7 (383-517)||(38862397-38862531)
[»] chr5 (1 HSPs)
chr5 (384-443)||(25986001-25986060)
[»] chr4 (2 HSPs)
chr4 (377-441)||(34648874-34648938)
chr4 (385-442)||(49385786-49385843)
[»] chr6 (1 HSPs)
chr6 (384-448)||(4038752-4038816)


Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 4419778 - 4420282
Alignment:
Q  18 caaaatttacaaatataaatgcaataaataaataaattggtataaactaacaatctgatttgtatttctgtcaaaaagatgagagcaaactgtccaagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4419778 caaaatttacaaatataaatgcaataaataaataaattggtataaactaacaatctaatttgtatttctgtcaaaaagatgagagcaaactgtccaagta 4419877  T
Q  118 atcaattcctaggtcctgaaatagaaaaacatcattttctaacatgtcttccaattccaacactgccatctttttgtttgcaggttcttcaatattcatc 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4419878 atcaattcctaggtcctgaaatacaaaaacatcattttctaacatgtcttccaattccaacactgccatctttttgtttgcagtttcttcaatattcatc 4419977  T
Q  218 acatcaacaaattctcctctatcccttaatcctctcttccttgaatccaataaactttctctctttgtaacatcaataattcctttcttaccatatccta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4419978 acatcaacaaattctcctctatcccttaatcctctcttccttgaatccaataaactttctctctttgtaacatcaacaattcctttcttaccatatccta 4420077  T
Q  318 aagcatttgtatttgcaacactctcaattgggaaattaagacatgcttttgaacctctaattctcaaagcagctttatcataagctaaagcagcttgttc 417  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4420078 aagtatttgtatttgcaacactctcaattgggaaattaagacatgcttttgaacctctaattctcaaagcagctttatcataagctaaagcagcttgttc 4420177  T
Q  418 agctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctgcatattttccccatggccttctccttactcctcta 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4420178 agctgtatcaaatgtaccaagccaaactcttgaacctttctttgatgaatctctaatttcagctgcatattttccccatggccttctccttactcctcta 4420277  T
Q  518 taatg 522  Q
    |||||    
T  4420278 taatg 4420282  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 346 - 447
Target Start/End: Complemental strand, 4418010 - 4417909
Alignment:
Q  346 tgggaaattaagacatgcttttgaacctctaattctcaaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaact 445  Q
    ||||||||||||  | || ||||||||||| ||| | ||||||||| |||||||||| | |||||||| ||||||||| |  ||||| |||||||| |||    
T  4418010 tgggaaattaagcaaagcctttgaacctctcattttgaaagcagctctatcataagccatagcagcttcttcagctgtttggaatgttccaagccatact 4417911  T
Q  446 ct 447  Q
    ||    
T  4417910 ct 4417909  T

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Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 519
Target Start/End: Original strand, 30629519 - 30629655
Alignment:
Q  383 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctg 482  Q
    ||||| |||| ||||||||||||||| |||  ||||||||||||||||||||||| |||||||||   ||| ||  | |  || ||||| ||||| ||||    
T  30629519 aaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttccgctg 30629618  T
Q  483 catattttccccatggccttctccttactcctctata 519  Q
    |  ||||||||||||| |||||||| |||||||||||    
T  30629619 cgaattttccccatggtcttctcctaactcctctata 30629655  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 383 - 514
Target Start/End: Original strand, 30623888 - 30624019
Alignment:
Q  383 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctg 482  Q
    ||||| |||| ||||||||||||||||||   ||||||||||||||||||||||| |||||||||   ||||||  |||  || ||||| ||||| ||||    
T  30623888 aaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtctcttatttccgctg 30623987  T
Q  483 catattttccccatggccttctccttactcct 514  Q
    |  ||||||||||||| ||||| || ||||||    
T  30623988 cgaattttccccatggtcttcttctaactcct 30624019  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 472 - 522
Target Start/End: Original strand, 40444682 - 40444732
Alignment:
Q  472 aatttcagctgcatattttccccatggccttctccttactcctctataatg 522  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  40444682 aatttctgcagcatattttccccatggccttctccttactcctctgtaatg 40444732  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 504
Target Start/End: Complemental strand, 30641840 - 30641730
Alignment:
Q  394 atcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctgcatattttccc 493  Q
    ||||||||||   |||||||||||||| ||||||||||| |||||||| | |||||  |||||| |||  |  || | |||||| |||||| ||||||||    
T  30641840 atcataagctcttgcagcttgttcagcagtatcaaatgttccaagccatattcttgtccctttccttgttgggtcacgaatttctgctgcaaattttccc 30641741  T
Q  494 catggccttct 504  Q
    ||||| |||||    
T  30641740 catggtcttct 30641730  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 30689730 - 30689788
Alignment:
Q  386 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 444  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| |||||||||||    
T  30689730 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaac 30689788  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 448
Target Start/End: Original strand, 30698616 - 30698678
Alignment:
Q  386 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactctt 448  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| || ||||||||||||    
T  30698616 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactctt 30698678  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 30718773 - 30718831
Alignment:
Q  386 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 444  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| |||||||||||    
T  30718773 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaac 30718831  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 519
Target Start/End: Complemental strand, 18652937 - 18652894
Alignment:
Q  476 tcagctgcatattttccccatggccttctccttactcctctata 519  Q
    ||||||||| |||| |||||||||||||||||||| ||||||||    
T  18652937 tcagctgcaaatttcccccatggccttctccttacacctctata 18652894  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 30671835 - 30671893
Alignment:
Q  386 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 444  Q
    ||||||| |||||||||||||||||| | ||||||  | |||||||| |||||||||||    
T  30671835 gcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaac 30671893  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 30710499 - 30710557
Alignment:
Q  386 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 444  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| || ||||||||    
T  30710499 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaac 30710557  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 456
Target Start/End: Original strand, 18709026 - 18709099
Alignment:
Q  383 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaaccttt 456  Q
    |||||||||||||||||||||   ||||||| |   ||||||||||| || |||||||| |||||||| |||||    
T  18709026 aaagcagctttatcataagcttttgcagcttctatggctgtatcaaaggttccaagccatactcttgatccttt 18709099  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 384 - 441
Target Start/End: Complemental strand, 33470034 - 33469977
Alignment:
Q  384 aagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagcca 441  Q
    ||||||||||||||||||| ||||| |||| ||||||||| ||||| |||||||||||    
T  33470034 aagcagctttatcataagccaaagctgcttcttcagctgtgtcaaaagtaccaagcca 33469977  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 519
Target Start/End: Complemental strand, 38809704 - 38809648
Alignment:
Q  463 cgaatctctaatttcagctgcatattttccccatggccttctccttactcctctata 519  Q
    |||||||| ||| || |||||| ||||||||||||||||| ||||||||||||||||    
T  38809704 cgaatctcgaatctctgctgcacattttccccatggccttatccttactcctctata 38809648  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 394 - 519
Target Start/End: Complemental strand, 38822722 - 38822597
Alignment:
Q  394 atcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctgcatattttccc 493  Q
    ||||||||||   |||||||  ||||| || | ||||||||||||||||||||  | ||| | | | | |||||||| ||| || || ||| ||||||||    
T  38822722 atcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccc 38822623  T
Q  494 catggccttctccttactcctctata 519  Q
    ||||||||| |||| |||||||||||    
T  38822622 catggccttatcctcactcctctata 38822597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 38830798 - 38830756
Alignment:
Q  395 tcataagctaaagcagcttgttcagctgtatcaaatgtaccaa 437  Q
    ||||||||||||||||||  |||||||||||||||||| ||||    
T  38830798 tcataagctaaagcagctgcttcagctgtatcaaatgttccaa 38830756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 517
Target Start/End: Complemental strand, 38862531 - 38862397
Alignment:
Q  383 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctg 482  Q
    ||||| |||| |||||||||||||||||||  ||| || || || ||||| |||| ||| |||||   ||||||  |||  |||||||| || || || |    
T  38862531 aaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgcgg 38862432  T
Q  483 catattttccccatggccttctccttactcctcta 517  Q
    || ||||||||||||||||  | ||||||||||||    
T  38862431 caaattttccccatggcctagttcttactcctcta 38862397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 25986060 - 25986001
Alignment:
Q  384 aagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaa 443  Q
    |||||||| |||||||||| |||||||||| |||||| || ||||| |||||||||||||    
T  25986060 aagcagctctatcataagccaaagcagcttcttcagcagtgtcaaaagtaccaagccaaa 25986001  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 441
Target Start/End: Original strand, 34648874 - 34648938
Alignment:
Q  377 attctcaaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagcca 441  Q
    ||||| |||||||||||||||||||| |  ||||| | ||||||||| | |||||||||||||||    
T  34648874 attctgaaagcagctttatcataagcaattgcagcctcttcagctgtttgaaatgtaccaagcca 34648938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 49385843 - 49385786
Alignment:
Q  385 agcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaa 442  Q
    ||||||| |||||||||| | |||||||| || ||| |||||||| ||||||||||||    
T  49385843 agcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaa 49385786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 4038816 - 4038752
Alignment:
Q  384 aagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactctt 448  Q
    ||||||| | ||||||||||  |||||||| ||||||||||||||| || || | ||||||||||    
T  4038816 aagcagcctcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactctt 4038752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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