View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15540_low_4 (Length: 568)
Name: NF15540_low_4
Description: NF15540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15540_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 7e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 406 - 547
Target Start/End: Original strand, 42037331 - 42037472
Alignment:
| Q |
406 |
gtatctggtctagctgccaatacttactcaattgaacacacatacacaatcataaaagatgcggtgaccgagttcgaactcatcatacacgattaaccct |
505 |
Q |
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| T |
42037331 |
gtatctggtctagctgccaatacttactcaattgaacacacatacacaatcataaaagatgtggtgaccgagttcgaactcatcatacacgattaaccct |
42037430 |
T |
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| Q |
506 |
acttctttgtactttctttcttttcaatttgttttatactac |
547 |
Q |
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| T |
42037431 |
acttctttgtactttctttcttttcaatttgttttatactac |
42037472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 181 - 352
Target Start/End: Original strand, 42037105 - 42037277
Alignment:
| Q |
181 |
actaatattaacatatatcattatcttattttgaaaatgttaaggttcaatcaaaagatgaacttgaaagatttttcttattgaagaggctgaaagatta |
280 |
Q |
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| T |
42037105 |
actagtattaacatatatcattatcttattttgaaaatgttaaggttcaatcaaaagatgaacttgaaagatttttcttattgaagaggctgaaagatta |
42037204 |
T |
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| Q |
281 |
tctcaatggttgttac-nnnnnnnntctaaattatctctaattgtatgatacaaaattttgaaattgctagag |
352 |
Q |
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| T |
42037205 |
tctcaatggttgttacaaaaaaaaatctaaatcatctctaattgtatgatacaaaattttgaaattgctagag |
42037277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 42036995 - 42037111
Alignment:
| Q |
19 |
ccaaaccaaagagaaaaatcaatgaattacaacatattgtatatttgtattaatatgataaatgcgtttctgtcccttgagaggaagaataccttctctt |
118 |
Q |
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| T |
42036995 |
ccaaaccaaagagaaaaatcaatgaattacaacatattgtatatttgtattaatatgataaatgcgtttctgtcccttgagaggaagaataccttctctt |
42037094 |
T |
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| Q |
119 |
tatgcagcctactagta |
135 |
Q |
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| T |
42037095 |
tatgcagcctactagta |
42037111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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