View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15540_low_5 (Length: 434)
Name: NF15540_low_5
Description: NF15540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15540_low_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 6676659 - 6677092
Alignment:
| Q |
1 |
tgaacattgaaaccttcaagtattttatcccacttaaaccgatttatgcttttaccaccattttatttcaatcccagtaatacgaatttagcacgatctg |
100 |
Q |
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| T |
6676659 |
tgaacattgaaacctt-aagtattttatcccacttaaaccgatttatgcttttaccaccattttatttcaatcccagtaaaacgaatttagcacgatctg |
6676757 |
T |
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| Q |
101 |
tgataggatctaaatcctaccacaatggaaaaccatgaaaactattggaaactacggttgtaagctaaaatgacaagagaatagaaactactagaaaata |
200 |
Q |
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| T |
6676758 |
tgataggatctaaatcctaccacaatggaaaaccatgaaaactattggaaactacggttctaagctaaaatgacaagagaatagaaactactagaaaata |
6676857 |
T |
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| Q |
201 |
aaatacattttcattcatgttatatcaatttt-gactgaaatcatccctctcaattgtttttctttctcttaaataaaagagtgatttgatttccatata |
299 |
Q |
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| T |
6676858 |
aaatacattttcattcatgttatatcaattttggactgaaattatctctctaaattgtttttctttctcttaaataaaagagtgatttgatttccatata |
6676957 |
T |
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| Q |
300 |
ttttcagctttctttgatatannnnnnngaattcttcatcttaacatatcgtttttatataattttatccaagtctcaattttattataatcttcatcat |
399 |
Q |
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| T |
6676958 |
ttttcagctttctttgatatttttttttgaattcttcgtcttaacaggtcgtttttatataattttatccaagtcttaattttattataatcttcatcat |
6677057 |
T |
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| Q |
400 |
tatcatttagtatgaattttggactgaaatcacct |
434 |
Q |
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| T |
6677058 |
tatcatttagtatgaattttggactgaaatcacct |
6677092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 345
Target Start/End: Original strand, 6677079 - 6677186
Alignment:
| Q |
233 |
gactgaaatcatccctctcaattgtttttctttctcttaaataaaagagtgatttgatttccatatattttcagctttctttgatatannnnnnngaatt |
332 |
Q |
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| T |
6677079 |
gactgaaatcacctctctcaattgtttttctttctcttagttaaaagag-----tgatttccatatattttcagctttctttgatatgtttttttgaatt |
6677173 |
T |
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| Q |
333 |
cttcatcttaaca |
345 |
Q |
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| T |
6677174 |
cttcatcttaaca |
6677186 |
T |
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