View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15540_low_6 (Length: 360)
Name: NF15540_low_6
Description: NF15540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15540_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 45201931 - 45201606
Alignment:
| Q |
15 |
caaaggcaaaacttcatcatcaacttcatgaatttgaaaaacaggtgcatatcgacctaaacctaatccattaagccaaattctaacaccatcttcacca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201931 |
caaaggcaaaacttcatcatcaacttcatgaatttgaaaaacaggtgcatatcgacctaaacctaatccattaagccaaattctaacaccatcttcacca |
45201832 |
T |
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| Q |
115 |
caacttcctcttccaccatcttcattcctagcatcaaaatcgcctaaattctctgaagaacgaattctactacccgaattatcaccttcaaaatctcgat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201831 |
caacttcctcttccaccatcttcattcctagcatcaaaatcacctaaattctctgaagaacgaattctactacccgaattatcaccttcaaaatctcgat |
45201732 |
T |
|
| Q |
215 |
acaaatcatcttcattatcattatcaacatcttcaccttcttcgattcgcgaagatacccaattcgatcttggtcttttggaaccctttttcactttcca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201731 |
acaaatcatcttcattatcattatcaacatcttcaccttcttcgattcgcgaagatacccaattcgatcttggtcttttggaaccctttttcactttcca |
45201632 |
T |
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| Q |
315 |
gctaccaatgattacaccgtcggtgt |
340 |
Q |
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|||||||||||||||||||||||||| |
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| T |
45201631 |
gctaccaatgattacaccgtcggtgt |
45201606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 18865804 - 18865698
Alignment:
| Q |
235 |
ttatcaacatcttcaccttcttcgattcgcgaagatacccaattcgatcttggtctttt-ggaaccctttttcactttccagctaccaatgattacaccg |
333 |
Q |
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||||| |||||||||| ||||| |||||| ||||| || || |||||||||||||||| ||| |||||||||| ||||||||||| |||| |||||||| |
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| T |
18865804 |
ttatcgacatcttcacgttctttgattcgtgaagaaactaaactcgatcttggtctttttggagccctttttcaatttccagctacaaatggttacaccg |
18865705 |
T |
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| Q |
334 |
tcggtgt |
340 |
Q |
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||||||| |
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| T |
18865704 |
tcggtgt |
18865698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 40340911 - 40340816
Alignment:
| Q |
19 |
ggcaaaacttcatcatcaacttcatgaatttgaaaaacaggtgcatatcgacctaaacctaatccattaagccaaattctaacaccatcttcacca |
114 |
Q |
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|||||||||||||||||||||||||| | || ||| || || ||||| |||||||| || || |||||||||||||| |||| |||||||||||| |
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| T |
40340911 |
ggcaaaacttcatcatcaacttcatgcacttcaaacacgggcgcataacgacctaatcccaacccattaagccaaatcctaatcccatcttcacca |
40340816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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