View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15541_high_10 (Length: 553)

Name: NF15541_high_10
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15541_high_10
NF15541_high_10
[»] chr7 (1 HSPs)
chr7 (356-462)||(29060658-29060765)
[»] chr1 (2 HSPs)
chr1 (389-462)||(48835016-48835089)
chr1 (409-446)||(49420160-49420197)
[»] chr3 (1 HSPs)
chr3 (389-462)||(33455700-33455773)
[»] chr4 (3 HSPs)
chr4 (269-339)||(32078656-32078726)
chr4 (470-530)||(29057878-29057938)
chr4 (394-431)||(22255673-22255710)
[»] chr8 (2 HSPs)
chr8 (396-446)||(35840465-35840515)
chr8 (394-431)||(5433644-5433681)
[»] chr6 (1 HSPs)
chr6 (394-446)||(29647387-29647439)
[»] chr2 (1 HSPs)
chr2 (394-446)||(30545370-30545422)


Alignment Details
Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 356 - 462
Target Start/End: Complemental strand, 29060765 - 29060658
Alignment:
Q  356 gggaattgtttcccaccatgggaaaannnnnnn-aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacaca 454  Q
    |||||||||||||||||||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29060765 gggaattgtttcccaccatgggaaagttttttttaacggttagattaaggagtagcgcatattttatgatggtctgttcacaccatatattttccacaca 29060666  T
Q  455 tcatcttc 462  Q
    ||||||||    
T  29060665 tcatcttc 29060658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 389 - 462
Target Start/End: Complemental strand, 48835089 - 48835016
Alignment:
Q  389 aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacacatcatcttc 462  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48835089 aacggttagattaaggagtagctcatattttatgatggtctgttcacaccatatattttccacacatcatcttc 48835016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 446
Target Start/End: Original strand, 49420160 - 49420197
Alignment:
Q  409 gcacatattttatgatggtctgttcacaccatatattt 446  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  49420160 gcacacattttatgatggtctgtccacaccatatattt 49420197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 389 - 462
Target Start/End: Complemental strand, 33455773 - 33455700
Alignment:
Q  389 aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacacatcatcttc 462  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33455773 aacggttagattaaggagtaacacatattttatgatggtctgttcacaccatatatattccacacatcatcttc 33455700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 32078726 - 32078656
Alignment:
Q  269 ttaaatattagacacagttgcaaaatatcagtcttaaatttcaaattggttcatttgtagatacattttac 339  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  32078726 ttaaatattagacacagttgcaaaatattagtcttaaatttccaattggttcatttgtagatacattttac 32078656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 470 - 530
Target Start/End: Original strand, 29057878 - 29057938
Alignment:
Q  470 ataaacatctcccctttcaatttaacacggttagctattatgttaaaagtacatctgctat 530  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  29057878 ataaacatctcccctttcaatttaacacggttagttattctgttaaaagtacatcttctat 29057938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 431
Target Start/End: Original strand, 22255673 - 22255710
Alignment:
Q  394 ttagattaaggagtagcacatattttatgatggtctgt 431  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  22255673 ttagattaaagaggagcacatattttatgatggtctgt 22255710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 35840515 - 35840465
Alignment:
Q  396 agattaaggagtagcacatattttatgatggtctgttcacaccatatattt 446  Q
    ||||||| |||  ||||| ||||||||||||||||| ||||||||||||||    
T  35840515 agattaaagaggtgcacacattttatgatggtctgtccacaccatatattt 35840465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 431
Target Start/End: Complemental strand, 5433681 - 5433644
Alignment:
Q  394 ttagattaaggagtagcacatattttatgatggtctgt 431  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  5433681 ttagattaaagaggagcacatattttatgatggtctgt 5433644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 29647387 - 29647439
Alignment:
Q  394 ttagattaaggagtagcacatattttatgatggtctgttcacaccatatattt 446  Q
    ||||||||| |||  ||||||||||||||||||| | | ||||||||||||||    
T  29647387 ttagattaaagaggtgcacatattttatgatggtttctccacaccatatattt 29647439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 30545422 - 30545370
Alignment:
Q  394 ttagattaaggagtagcacatattttatgatggtctgttcacaccatatattt 446  Q
    ||||||||| |||  ||||| ||||||||||||| ||| ||||||||||||||    
T  30545422 ttagattaaagaggtgcacacattttatgatggtttgtccacaccatatattt 30545370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University