View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15541_high_12 (Length: 536)

Name: NF15541_high_12
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15541_high_12
NF15541_high_12
[»] chr3 (9 HSPs)
chr3 (261-472)||(45914121-45914332)
chr3 (162-308)||(45870450-45870596)
chr3 (152-269)||(2996482-2996600)
chr3 (182-284)||(20995053-20995155)
chr3 (312-480)||(20949491-20949660)
chr3 (182-284)||(20981894-20981996)
chr3 (224-269)||(20948718-20948763)
chr3 (420-482)||(7058607-7058669)
chr3 (436-474)||(20981712-20981750)
[»] chr4 (1 HSPs)
chr4 (153-497)||(3978065-3978401)
[»] chr5 (3 HSPs)
chr5 (410-480)||(7976609-7976679)
chr5 (144-210)||(38142202-38142268)
chr5 (410-467)||(7895207-7895264)
[»] chr6 (6 HSPs)
chr6 (174-267)||(7115545-7115638)
chr6 (174-267)||(7120617-7120710)
chr6 (174-267)||(7124021-7124114)
chr6 (188-240)||(7140762-7140814)
chr6 (188-240)||(8680376-8680428)
chr6 (188-240)||(8656677-8656729)
[»] chr7 (3 HSPs)
chr7 (165-286)||(44501431-44501552)
chr7 (144-267)||(32413580-32413703)
chr7 (162-288)||(6889120-6889246)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 261 - 472
Target Start/End: Complemental strand, 45914332 - 45914121
Alignment:
Q  261 tctggaaacatattccttctcttatatttcatgctgatgattttcgaattcgaacttacaacatattcataaaatttgtctctaaaatttatctcttcgt 360  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45914332 tctggaaacgtattccttctcttatatttcatgctgatgattttcgaattcgaacttacaacatattcataaaatttgtctctaaaatttatctcttcgt 45914233  T
Q  361 gattcctctatatcgctgcacgctcttgattttaagcctaaaaacggttgcttaaagcctcacataatcgacagaattgtgaattatgctctttcacaca 460  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45914232 gattcctctatatcgctgcaggctcttgattttaagcctaaaaacggttgcttaaagcctcacataatcgacagaattgtgaattatgctctttcacaca 45914133  T
Q  461 atgtccagcggt 472  Q
    ||||||||||||    
T  45914132 atgtccagcggt 45914121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 162 - 308
Target Start/End: Complemental strand, 45870596 - 45870450
Alignment:
Q  162 tcagcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatct 261  Q
    |||||||| || |||| || ||||||||||| ||||| || |||| |||| |||||  |||||||||||||||  |||||||  ||||||||| ||||||    
T  45870596 tcagcgacctacctgactgtgttatccttcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgttttatcaccaagatatacggatct 45870497  T
Q  262 ctggaaacatattccttctcttatatttcatgctgatgattttcgaa 308  Q
     ||||||| | |||||||||||||||| ||| ||||||| |||||||    
T  45870496 ttggaaacgtcttccttctcttatattgcattctgatgactttcgaa 45870450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 2996600 - 2996482
Alignment:
Q  152 aaagacagattcagcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctc-aaga 250  Q
    ||||||||  |||| |||||||||||||| ||||||||||| ||||| || |||||||| || |||   |||||||||||||| ||||||||| | |||     
T  2996600 aaagacaggctcagtgacttaactgattgtgttatccttcacatactttcatttttgaacacaaaagatgcagttcaaacttgcattttatccccaaagg 2996501  T
Q  251 tataaggatctctggaaac 269  Q
    | ||||||||| |||||||    
T  2996500 tttaaggatctatggaaac 2996482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 20995155 - 20995053
Alignment:
Q  182 gttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaaacatattccttctc 281  Q
    ||||||||||| || ||||| ||| |||| ||||||  ||| |||||||||||| |||||||| ||| |||||||||||| ||||||| | ||||| |||    
T  20995155 gttatccttcacattctctcctttctgaacaccaaagacgctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcctgctc 20995056  T
Q  282 tta 284  Q
    |||    
T  20995055 tta 20995053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 480
Target Start/End: Original strand, 20949491 - 20949660
Alignment:
Q  312 gaacttacaacatattcataaaatttgtctctaaaattt-atctcttcgtgattcctctatatcgctgcacgctcttgattttaagcctaaaaacggttg 410  Q
    |||||||||| |||||||  ||||| || |||||||||| ||||||| |||||||||||||  |  |  | |||||||||||||||| | | |  ||| |    
T  20949491 gaacttacaagatattcaccaaattcgtgtctaaaattttatctctttgtgattcctctatcacattataagctcttgattttaagcatcatattggtcg 20949590  T
Q  411 cttaaagcctcacataatcgacagaattgtgaattatgctctttcacacaatgtccagcggttaggactt 480  Q
     ||| ||||||||||| || | || ||||||||||| ||| ||  ||||||||||||||| ||| |||||    
T  20949591 tttagagcctcacatactcaaaaggattgtgaattacgctattaaacacaatgtccagcgcttacgactt 20949660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 20981996 - 20981894
Alignment:
Q  182 gttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaaacatattccttctc 281  Q
    ||||||||||| || ||||| ||| |||| ||||||   || |||||||||||| |||||||| ||| |||||| ||||| ||||||| | ||||| |||    
T  20981996 gttatccttcacattctctcctttctgaacaccaaacatgctgttcaaacttgtgttttatccccaatatataaagatctttggaaacgtcttcctgctc 20981897  T
Q  282 tta 284  Q
    |||    
T  20981896 tta 20981894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 20948718 - 20948763
Alignment:
Q  224 gttcaaacttgtattttatcctcaagatataaggatctctggaaac 269  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||    
T  20948718 gttcaaacttgtgttttatccacaagatataacgatctctggaaac 20948763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 7058669 - 7058607
Alignment:
Q  420 tcacataatcgacagaattgtgaattatgctctttcacacaatgtccagcggttaggacttga 482  Q
    ||||||| |||| |||||| |||| |||||| ||||||| ||||||||||| |||||| ||||    
T  7058669 tcacatactcgaaagaattttgaaatatgctttttcacataatgtccagcgattaggagttga 7058607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 474
Target Start/End: Complemental strand, 20981750 - 20981712
Alignment:
Q  436 attgtgaattatgctctttcacacaatgtccagcggtta 474  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  20981750 attgtgaattacgctatttcacacaatgtccagcggtta 20981712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 153 - 497
Target Start/End: Original strand, 3978065 - 3978401
Alignment:
Q  153 aagacagattcagcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagata 252  Q
    |||||||| ||||||||||| ||||  || |||| ||||| |||||||| ||||| || |||||   ||| |||||||||||  |||||||| |||||||    
T  3978065 aagacagactcagcgacttacctgaaagcattattcttcacatactctcgtttttaaacaccaaccacgcggttcaaacttgcgttttatccacaagata 3978164  T
Q  253 taaggatctctggaaacatattccttctcttatatttcatgctgatgattttcgaattcgaacttacaacatattcataaaatttgtctctaaa-attta 351  Q
    ||||||||| ||||||| | ||||| |||||| ||| ||| ||   || |      || || ||||||| | |||||  | ||| || ||||||  ||||    
T  3978165 taaggatctttggaaacgtcttcctactcttacattgcattcttcagact------ttggagcttacaagaaattcaccagattagtgtctaaagtttta 3978258  T
Q  352 tctcttcgtgattcctctatatcgctgcacgctcttgattttaagcctaaaaacggttgcttaaagcctcacataatcgacagaattgtgaattatgctc 451  Q
    | |||||| |||||||||||  | || || |||||||||||||||| ||  |||||| ||||  |||||   | | |||| |  ||||||||||||||||    
T  3978259 tttcttcgcgattcctctatcgcactacaagctcttgattttaagcgtagtaacggtcgctttgagcct---aaactcgaaaagattgtgaattatgctc 3978355  T
Q  452 tttcacacaatgtccagcggttaggacttgaggtcaatggtgacat 497  Q
    |||||||||||||| | || ||||||||  |  |||||||||||||    
T  3978356 tttcacacaatgtcaaacgattaggactacatttcaatggtgacat 3978401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 7976679 - 7976609
Alignment:
Q  410 gcttaaagcctcacataatcgacagaattgtgaattatgctctttcacacaatgtccagcggttaggactt 480  Q
    ||||| |||||||| || || | || ||||||||||||||| |||||||||||||||||||||||||||||    
T  7976679 gcttagagcctcacttactcaaaaggattgtgaattatgctatttcacacaatgtccagcggttaggactt 7976609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 38142268 - 38142202
Alignment:
Q  144 gtgaaaacaaagacagattcagcgacttaactgattgcgttatccttcagatactctcttttttgaa 210  Q
    |||||||  |||||||| ||||||||||| |||| || ||||||||||| |||||||| ||||||||    
T  38142268 gtgaaaatgaagacagactcagcgacttacctgactgtgttatccttcacatactctcctttttgaa 38142202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 7895207 - 7895264
Alignment:
Q  410 gcttaaagcctcacataatcgacagaattgtgaattatgctctttcacacaatgtcca 467  Q
    ||||| |||||||| || || | |||||||||||||||||| ||||||||||||||||    
T  7895207 gcttagagcctcacttactcaaaagaattgtgaattatgctatttcacacaatgtcca 7895264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 7115638 - 7115545
Alignment:
Q  174 ctgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaa 267  Q
    ||||||| ||| | ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| |||  |||||  ||| ||||||||||    
T  7115638 ctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7115545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 7120710 - 7120617
Alignment:
Q  174 ctgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaa 267  Q
    ||||||| ||| | ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| |||  |||||  ||| ||||||||||    
T  7120710 ctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7120617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 7124114 - 7124021
Alignment:
Q  174 ctgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaa 267  Q
    ||||||| ||| | ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| |||  |||||  ||| ||||||||||    
T  7124114 ctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7124021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 7140814 - 7140762
Alignment:
Q  188 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtatttt 240  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||    
T  7140814 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtatttt 7140762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 8680428 - 8680376
Alignment:
Q  188 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtatttt 240  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||    
T  8680428 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtatttt 8680376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 8656729 - 8656677
Alignment:
Q  188 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtatttt 240  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  8656729 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgtttt 8656677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 44501552 - 44501431
Alignment:
Q  165 gcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctg 264  Q
    |||||||| |||| ||| |||||||||| ||||| |||||||||||| |||||  ||| ||||| ||||| ||||| ||| | ||||  |||||||| ||    
T  44501552 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 44501453  T
Q  265 gaaacatattccttctcttata 286  Q
    ||||| | ||||| | ||||||    
T  44501452 gaaacgtcttcctgcacttata 44501431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 267
Target Start/End: Original strand, 32413580 - 32413703
Alignment:
Q  144 gtgaaaacaaagacagattcagcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatc 243  Q
    |||||||  |||||||| |||| || ||| ||||||| ||| | ||||| |||||||| | |||||| ||||||  ||| ||||||||||| ||||| ||    
T  32413580 gtgaaaatcaagacagactcagtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtc 32413679  T
Q  244 ctcaagatataaggatctctggaa 267  Q
    | ||||||  ||| ||||||||||    
T  32413680 cacaagatggaagaatctctggaa 32413703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 6889120 - 6889246
Alignment:
Q  162 tcagcgacttaactgattgcgttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatct 261  Q
    |||| |||||| | ||||| ||||| ||||| ||||||||||||||| | |||| |  ||| ||||||||||| ||| |||||  |||||  ||  ||||    
T  6889120 tcagtgacttacccgattgtgttattcttcacatactctcttttttggacaccatagacgctgttcaaacttgcattctatccaaaagatggaacaatct 6889219  T
Q  262 ctggaaacatattccttctcttatatt 288  Q
    ||||||| || ||||| | ||||||||    
T  6889220 ctggaaatatcttcctacccttatatt 6889246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University