View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_high_15 (Length: 479)
Name: NF15541_high_15
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 330 - 462
Target Start/End: Original strand, 44636649 - 44636781
Alignment:
| Q |
330 |
actgtcgctgtcgtcatcataatgtatgtggttggtttcaagaattttgttaaggactcgtctccagcgccatgagagaatggctgtgacgaagaattgt |
429 |
Q |
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| T |
44636649 |
actgtcgctgtcgtcatcataatgtatgtggttggtttcaagaattttgttaaggactcgtctccagcgccatgagagaatggctgtgacgaagaattgt |
44636748 |
T |
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| Q |
430 |
ttggtgggcaaattgtataggatgcaacttagt |
462 |
Q |
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| T |
44636749 |
ttggtgggcaaattgtataggatgcaacttagt |
44636781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 44636321 - 44636493
Alignment:
| Q |
5 |
actgcaacatgagtagcactgtaaatagaaaacaagttaaacaacacaactcaacaatcatgaaaactagtaatataaaaatgactatcttagtgataaa |
104 |
Q |
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| T |
44636321 |
actgcaacatgagcagcactgtcaatagaaaacaagttagacaacacaactcaacaatcatgaaaactagtaatttcaaaatgactatcttagtgataaa |
44636420 |
T |
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| Q |
105 |
taaataactagggttaagatgaagatgaagatnnnnnnngagtcgtaatatttgtttttctagtagcatgcta |
177 |
Q |
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| T |
44636421 |
taaataactagggttaagatgaagatgaagataaaaaaagagtcgtaatatttgtttttctagtagcatgcta |
44636493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 44636557 - 44636601
Alignment:
| Q |
241 |
gaatttgtttaatcattcccagttcaaacgtattcttgttgttct |
285 |
Q |
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| T |
44636557 |
gaatttgtttaatcattcccagttcaaacgtattcttgttgttct |
44636601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 4142276 - 4142191
Alignment:
| Q |
6 |
ctgcaacatgagtagcactgtaa-atagaaaacaagttaaacaacacaactcaacaatcatgaaaactagtaatataaaaatgact |
90 |
Q |
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| T |
4142276 |
ctgcaacacgagcagcactgtcatatagaaaacaagttaaacaacacaacctaacaatcatgaaaactggtaatgtcaaaatgact |
4142191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 1882440 - 1882356
Alignment:
| Q |
46 |
caacacaactcaacaatcatgaaaactagtaatataaaaatgactatc-ttagtgataaataaataactagggttaagatgaagat |
130 |
Q |
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| T |
1882440 |
caacacaactcaacaatcatgaaaaat-gtaatttcaaaatgactatcatcagtcataaataaataactatagttaagattaagat |
1882356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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