View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15541_high_21 (Length: 355)

Name: NF15541_high_21
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15541_high_21
NF15541_high_21
[»] chr8 (19 HSPs)
chr8 (11-339)||(24097641-24097967)
chr8 (30-338)||(9417726-9418034)
chr8 (161-338)||(997043-997219)
chr8 (161-338)||(7836395-7836571)
chr8 (161-338)||(7806970-7807146)
chr8 (23-161)||(24268017-24268155)
chr8 (23-161)||(31576871-31577009)
chr8 (45-133)||(12765796-12765884)
chr8 (45-133)||(42714304-42714392)
chr8 (45-133)||(20025929-20026017)
chr8 (45-133)||(20036092-20036180)
chr8 (46-156)||(7836171-7836281)
chr8 (45-149)||(7806745-7806849)
chr8 (250-338)||(24268399-24268487)
chr8 (186-333)||(12765926-12766069)
chr8 (186-333)||(42714118-42714262)
chr8 (45-105)||(15968871-15968931)
chr8 (210-333)||(20028469-20028588)
chr8 (211-333)||(20036231-20036349)
[»] chr2 (12 HSPs)
chr2 (52-333)||(18577306-18577585)
chr2 (161-338)||(29910072-29910249)
chr2 (161-326)||(33402865-33403030)
chr2 (161-338)||(14271709-14271881)
chr2 (45-130)||(33402642-33402727)
chr2 (45-133)||(35875607-35875695)
chr2 (45-133)||(35883096-35883184)
chr2 (45-133)||(36722809-36722897)
chr2 (186-333)||(35875737-35875881)
chr2 (186-333)||(35883226-35883370)
chr2 (186-333)||(36722939-36723083)
chr2 (45-130)||(14271486-14271571)
[»] chr1 (6 HSPs)
chr1 (45-338)||(5383007-5383294)
chr1 (161-333)||(26908018-26908190)
chr1 (161-338)||(35756194-35756370)
chr1 (235-338)||(23550168-23550271)
chr1 (16-130)||(26908328-26908442)
chr1 (45-132)||(35756508-35756595)
[»] chr3 (12 HSPs)
chr3 (48-338)||(7786880-7787163)
chr3 (161-326)||(36434224-36434388)
chr3 (161-333)||(9294449-9294620)
chr3 (161-333)||(13978438-13978611)
chr3 (47-156)||(13978718-13978827)
chr3 (45-133)||(23484536-23484624)
chr3 (45-132)||(9294757-9294844)
chr3 (45-132)||(9307892-9307979)
chr3 (161-223)||(9308116-9308177)
chr3 (250-338)||(9308174-9308262)
chr3 (186-333)||(23484666-23484809)
chr3 (192-333)||(13329853-13329990)
[»] chr7 (13 HSPs)
chr7 (161-338)||(9735476-9735653)
chr7 (161-311)||(4314588-4314738)
chr7 (49-161)||(4314934-4315046)
chr7 (49-150)||(28343551-28343652)
chr7 (170-314)||(8980904-8981048)
chr7 (49-156)||(8981259-8981366)
chr7 (186-333)||(32816599-32816742)
chr7 (45-133)||(9735257-9735345)
chr7 (45-133)||(32816469-32816557)
chr7 (186-257)||(48714346-48714417)
chr7 (45-133)||(48714459-48714544)
chr7 (82-133)||(2890238-2890289)
chr7 (213-269)||(25901763-25901819)
[»] chr6 (5 HSPs)
chr6 (161-333)||(2850091-2850263)
chr6 (45-338)||(14097225-14097501)
chr6 (45-156)||(2849868-2849979)
chr6 (45-133)||(2847101-2847189)
chr6 (45-333)||(17513992-17514265)
[»] chr5 (10 HSPs)
chr5 (161-326)||(11221904-11222069)
chr5 (161-338)||(42733981-42734157)
chr5 (161-338)||(2640939-2641115)
chr5 (186-326)||(26649088-26649228)
chr5 (186-326)||(26920673-26920813)
chr5 (11-80)||(14914987-14915056)
chr5 (45-156)||(11221691-11221802)
chr5 (45-133)||(26648959-26649046)
chr5 (45-133)||(26920544-26920631)
chr5 (45-150)||(42734271-42734376)
[»] scaffold0091 (2 HSPs)
scaffold0091 (161-333)||(16083-16255)
scaffold0091 (45-130)||(16393-16478)
[»] chr4 (21 HSPs)
chr4 (161-326)||(28069370-28069534)
chr4 (161-338)||(50066252-50066428)
chr4 (161-338)||(25514628-25514803)
chr4 (195-333)||(11480852-11480990)
chr4 (161-333)||(50518611-50518784)
chr4 (170-338)||(7580352-7580521)
chr4 (45-150)||(11477904-11478009)
chr4 (45-130)||(50518923-50519008)
chr4 (45-132)||(28069146-28069233)
chr4 (161-338)||(34495375-34495548)
chr4 (77-158)||(34495747-34495828)
chr4 (182-251)||(25254588-25254657)
chr4 (48-156)||(7580033-7580141)
chr4 (45-132)||(25514405-25514492)
chr4 (45-132)||(50066565-50066652)
chr4 (170-244)||(9243722-9243796)
chr4 (41-150)||(28257857-28257966)
chr4 (161-201)||(11478127-11478167)
chr4 (46-89)||(5211747-5211790)
chr4 (290-330)||(9245645-9245685)
chr4 (186-230)||(28257789-28257833)
[»] scaffold0482 (2 HSPs)
scaffold0482 (161-338)||(11541-11717)
scaffold0482 (45-149)||(11838-11942)
[»] scaffold0842 (1 HSPs)
scaffold0842 (45-161)||(3051-3163)
[»] scaffold0186 (1 HSPs)
scaffold0186 (45-133)||(3121-3209)
[»] scaffold0959 (2 HSPs)
scaffold0959 (45-132)||(2404-2491)
scaffold0959 (290-331)||(2611-2652)
[»] scaffold0753 (3 HSPs)
scaffold0753 (45-156)||(1243-1354)
scaffold0753 (170-244)||(3227-3301)
scaffold0753 (290-331)||(1106-1147)
[»] scaffold0206 (1 HSPs)
scaffold0206 (210-333)||(399-518)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 24097967 - 24097641
Alignment:
Q  11 agcagcacagactcaaaagaagatatatcaattatttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcat 110  Q
    |||| |||| ||||||| ||||||||||||||| |||||||||||||  | ||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  24097967 agcatcacaaactcaaatgaagatatatcaattgtttgaatcaaaag--tcttgagtgaagattcaacaagaagatgaactttatgattaattgattcat 24097870  T
Q  111 catcatcaccacatggttttcaaaaatgtcttaaatattcaaggaagaaaatgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaaga 210  Q
    |||| |||||||||| ||||||| || |||||||| |||||||||||||||  |||| ||||  |||||||||||||| ||||||||||||||||||| |    
T  24097869 catcgtcaccacatgattttcaacaacgtcttaaagattcaaggaagaaaagacatgtctaatttaaaacatctcaaaaatactcaatggacaagaaaca 24097770  T
Q  211 ttgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaag 310  Q
    ||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||| || | |||||||||||||||||||||||||||||| |||||||    
T  24097769 ttgtgtgcaatcaccaagatgtattatgagataaattgcatcattaacaaaataatccaaggttcattaaccgagaaggtattgtcatctcatatagaag 24097670  T
Q  311 agaagattatcaactctgatgaatgaatt 339  Q
    |||| |||||||||||||||||| |||||    
T  24097669 agaacattatcaactctgatgaaagaatt 24097641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 9417726 - 9418034
Alignment:
Q  30 aagatatatcaattatttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttt 129  Q
    ||||| || ||||| ||||||||||||||||||  ||| || |||| || |||||| ||| ||||||| ||||| |||||||||||||||| ||||||||    
T  9417726 aagatgtagcaattgtttgaatcaaaagagtgtgcagtaaagattccacgagaagacgaactttatgagtaatttattcatcatcatcaccgcatggttt 9417825  T
Q  130 tcaaaaatgtcttaaatattcaaggaagaaaatgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaaga 229  Q
    |||| |||| |||||| ||||||||||||||| |||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  9417826 tcaacaatgccttaaagattcaaggaagaaaaggcatgcataaactaaaacatcttaaaggtactcaatggacaagaaacattgtgtgcaatcaccaaga 9417925  T
Q  230 ggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctga 329  Q
      |||||||||||| ||||||||||||||||||||||||| | || |||||||||||| |||||||||| ||| ||||||||||| ||||||||||| ||    
T  9417926 aaaattatgagataaattgcatcatcaacaaaataattcaaggttaattaaccgagaatgtattgtcatatcatatagaagagaaaattatcaactccga 9418025  T
Q  330 tgaatgaat 338  Q
    |||| ||||    
T  9418026 tgaaagaat 9418034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 161 - 338
Target Start/End: Original strand, 997043 - 997219
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||| ||||||||| ||||||||||||||||    
T  997043 atgcatgcctaaactaaaacatctcaaagatactcaatgga-aagaaacattgtgtgcaatcaccaacatgaactatgagataaattgcatcatcaacaa 997141  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||| | | || |||||||||||| |||||||| || || ||||||||||| ||||||||||| |||||| ||||    
T  997142 aataattaaaggttaattaaccgagaatgtattgtcgtcccatatagaagagaacattatcaactccgatgaaagaat 997219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 161 - 338
Target Start/End: Original strand, 7836395 - 7836571
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||| |||||||||  |||||||||||||||    
T  7836395 atgcatgcctaaactaaaacatctcaaagatactcaatgga-aagaaatattgtgtgcaatcaccaacatgaactatgagataatttgcatcatcaacaa 7836493  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||| | | || ||||||||||||  |||||||||| || ||||||||||| ||||||||||| |||||| ||||    
T  7836494 aataattaaaggttaattaaccgagaatatattgtcatcccatatagaagagaacattatcaactccgatgaaagaat 7836571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 161 - 338
Target Start/End: Original strand, 7806970 - 7807146
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||| |||||||||  |||||||||||||||    
T  7806970 atgcatgcctaaactaaaacatctcaaagatactcaatgga-aagaaatattgtgtgcaatcaccaacatgaactatgagataatttgcatcatcaacaa 7807068  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||| | | || ||||||||||||  ||||||||||  | ||||||||||| ||||||||||| |||||| ||||    
T  7807069 aataattaaaggttaattaaccgagaatatattgtcatcctatatagaagagaacattatcaactccgatgaaagaat 7807146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 24268017 - 24268155
Alignment:
Q  23 tcaaaagaagatatatcaattatttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccac 122  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||||||||| | ||| |    
T  24268017 tcaaaagaagatataacaattgtttgaatcaaaagagtgttaagtgaagattcaacaagaagatggactttatgattaattgattcatcatcgtgaccgc 24268116  T
Q  123 atggttttcaaaaatgtcttaaatattcaaggaagaaaa 161  Q
    |||||||| || || | |||||| |||| ||||| ||||    
T  24268117 atggttttgaacaaagccttaaagattcgaggaataaaa 24268155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 31577009 - 31576871
Alignment:
Q  23 tcaaaagaagatatatcaattatttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccac 122  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||||||||||||| | ||| |    
T  31577009 tcaaaagaagatataccaattgcttgaatcaaaagagtgttgagtgaagattcaacaaaaagatgaactttatgattagttgattcatcatcgtgaccgc 31576910  T
Q  123 atggttttcaaaaatgtcttaaatattcaaggaagaaaa 161  Q
    |||||||| || || | |||||| |||| ||||| ||||    
T  31576909 atggttttgaacaaagccttaaagattcgaggaataaaa 31576871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 12765796 - 12765884
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| |||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||||    
T  12765796 tttgaatcaaatgagtgttgattgaagattcaacaagaagatgtattttatgatcaattgactcatcctcatcaccacatggttttcaa 12765884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 42714392 - 42714304
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| |||||||||||||||| |||||||||| |||||| ||||| || ||||||||||||||||||    
T  42714392 tttgaatcaaatgagtgttgattgaagattcaacaagaagatgtattttatgatcaattgactcatcctcgtcaccacatggttttcaa 42714304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 20025929 - 20026017
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| |||||||||||||||| |||||||||| |||||| ||||| || ||||||||||| ||||||    
T  20025929 tttgaatcaaatgagtgttgattgaagattcaacaagaagatgtattttatgatcaattgactcatcctcgtcaccacatggatttcaa 20026017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 20036092 - 20036180
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| |||||||||||||||| |||||||||| |||||| ||||| || ||||||||||| ||||||    
T  20036092 tttgaatcaaatgagtgttgattgaagattcaacaagaagatgtattttatgatcaattgactcatcctcgtcaccacatggatttcaa 20036180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 7836171 - 7836281
Alignment:
Q  46 ttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaaa 145  Q
    |||||| ||| ||||||||| |||| ||||||||||||||| ||||||||||| ||||||  |||| |  |||||||||||||||||  || | ||||||    
T  7836171 ttgaattaaatgagtgttgattgaagattcaacaagaagataaattttatgatcaattgacacatccttgtcaccacatggttttcatcaaagccttaaa 7836270  T
Q  146 tattcaaggaa 156  Q
    ||||| |||||    
T  7836271 tattcgaggaa 7836281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 7806745 - 7806849
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaa 144  Q
    ||||||| ||| ||||||||| |||| ||||||||||||||| ||||||||||| ||||||  |||| |  |||||||||||||||||  || | |||||    
T  7806745 tttgaattaaatgagtgttgattgaagattcaacaagaagataaattttatgatcaattgacacatccttgtcaccacatggttttcatcaaagccttaa 7806844  T
Q  145 atatt 149  Q
    |||||    
T  7806845 atatt 7806849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 24268399 - 24268487
Alignment:
Q  250 atcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    |||| ||||||||||||||| | || ||||||||||||  ||||||||||||| ||||||| ||| ||||||||||| |||||| ||||    
T  24268399 atcaccaacaaaataattcaaggttaattaaccgagaatttattgtcatctcatatagaagcgaacattatcaactccgatgaaagaat 24268487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 333
Target Start/End: Original strand, 12765926 - 12766069
Alignment:
Q  186 aaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgag 285  Q
    ||||| ||| |||| |||||||| |||||||| |||||| |||||||| |||||||   |||| ||||||||    | |||||| | || ||||||| ||    
T  12765926 aaagacacttaatgaacaagaaacattgtgtggaatcactaagaggaaatatgagaagaattgtatcatcaa----acaattcaaggttaattaaccaag 12766021  T
Q  286 aaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    ||| ||||||| ||| | ||||||||||| |||||||||| |||||||    
T  12766022 aagatattgtcttcttatatagaagagaacattatcaactttgatgaa 12766069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 333
Target Start/End: Complemental strand, 42714262 - 42714118
Alignment:
Q  186 aaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaacc-ga 284  Q
    ||||| |||||||| |||||||| |||||||| |||||| ||||| ||||||||||   |||||||||||    ||| |||||| | || ||| |||  |    
T  42714262 aaagacactcaatgaacaagaaacattgtgtggaatcactaagagaaattatgagaagaattgcatcatc----aaacaattcaaggttgatttaccaaa 42714167  T
Q  285 gaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    |||| ||||||| ||| | ||||||||||| |||||||||| |||||||    
T  42714166 gaagatattgtcttcttatatagaagagaacattatcaactttgatgaa 42714118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 15968871 - 15968931
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattga 105  Q
    ||||||||||| | ||||||| |||| |||||||||||||||||||||||| || ||||||    
T  15968871 tttgaatcaaatgggtgttgattgaagattcaacaagaagatgaattttataatcaattga 15968931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 333
Target Start/End: Original strand, 20028469 - 20028588
Alignment:
Q  210 attgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaa 309  Q
    |||||||| |||||| ||||| ||||||||||   |||||||||||||    | |||||| | || ||| ||| ||||| ||||||| ||| | ||||||    
T  20028469 attgtgtggaatcactaagagaaattatgagaagaattgcatcatcaa----acaattcaaggttgattgaccaagaagatattgtcttcttatatagaa 20028564  T
Q  310 gagaagattatcaactctgatgaa 333  Q
    ||||| |||||||||| |||||||    
T  20028565 gagaacattatcaactttgatgaa 20028588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 333
Target Start/End: Original strand, 20036231 - 20036349
Alignment:
Q  211 ttgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaag 310  Q
    ||||||| |||||| ||||| ||||||||||   |||||||||||||    | |||||| | || ||| ||| ||||| ||||||| ||| | |||||||    
T  20036231 ttgtgtggaatcactaagagaaattatgagaagaattgcatcatcaa----acaattcaaggttgattgaccaagaagatattgtcttcttatatagaag 20036326  T
Q  311 agaagattatcaactctgatgaa 333  Q
    |||| |||||||||| |||||||    
T  20036327 agaacattatcaactttgatgaa 20036349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 52 - 333
Target Start/End: Original strand, 18577306 - 18577585
Alignment:
Q  52 caaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaaatattca 151  Q
    ||||||||||||  ||||| |||||||||||||||||| |||||||||||||||||||||||| ||| || ||||||||||| |||| |||||| |||||    
T  18577306 caaaagagtgttcggtgaagattcaacaagaagatgaactttatgattaattgattcatcatcgtcatcatatggttttcaacaatgccttaaagattca 18577405  T
Q  152 aggaagaaaatgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcat 251  Q
    ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||| ||  |||| ||||||||| || |||||||||||| |||||||    
T  18577406 aggaagaaaagacatgtctaaactaaaacatctcaaagatactcaatggacaagaaacat--tgtgaaatcaccaaaagaaattatgagataaattgcat 18577503  T
Q  252 catcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    |||||||||||||||||| | || |||||  |||||  ||||||||||||| |||||| |||| ||||||||||| ||||||    
T  18577504 catcaacaaaataattcaaggttaattaattgagaatctattgtcatctcatatagaaaagaacattatcaactccgatgaa 18577585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 161 - 338
Target Start/End: Original strand, 29910072 - 29910249
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||| ||| ||||||||||||    
T  29910072 atgcatgtctaaactaaaacatctcaaagatacttaatggacaagaaacattgtgtgaaatcaccaagaggaattatgtgataaattacatcatcaacaa 29910171  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||||| | || ||||||| |||| ||||||||||| || ||||||||||| |||||||||||| ||||| ||||    
T  29910172 aataattcaaggttaattaaccaagaatgtattgtcatcacatatagaagagaacattatcaactctaatgaaagaat 29910249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 161 - 326
Target Start/End: Original strand, 33402865 - 33403030
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||| || |||||||||| ||    
T  33402865 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaagcattgtgtgcaatcaccaagagaaactatgagataaatcgcatcatcaataa 33402964  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactc 326  Q
    |||| |||| | || |||||||||||| |||||||||||||| |||||||| || || ||||||||    
T  33402965 aatagttcaaggttaattaaccgagaatgtattgtcatctcatatagaagaaaacatcatcaactc 33403030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 161 - 338
Target Start/End: Original strand, 14271709 - 14271881
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||     ||||| |||||  | |||||||||||||    
T  14271709 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaacattgtgtgcaatcgccaa-----attataagataattcgcatcatcaacaa 14271803  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    |||| |||| | || |||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||| ||||    
T  14271804 aatagttcaaggttaattaaccgagaatgtattgtcatctcatatagaagagaacatcatcaactctgatgaaagaat 14271881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 33402642 - 33402727
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggtttt 130  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||||| ||||| || |||||||||||||||    
T  33402642 tttgaatcaaaagagtgttgattgaagattcaacaagaagatgaattttataatcaattgactcatcctcgtcaccacatggtttt 33402727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 35875607 - 35875695
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| |||||||||||||||| |||||||||| |||||| ||||| || || |||||||||||||||    
T  35875607 tttgaatcaaatgagtgttgattgaagattcaacaagaagatgtattttatgatcaattgactcatcctcgtcgccacatggttttcaa 35875695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 35883096 - 35883184
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| |||||||||||||||| |||||||||| |||||| ||||| || || |||||||||||||||    
T  35883096 tttgaatcaaatgagtgttgattgaagattcaacaagaagatgtattttatgatcaattgactcatcctcgtcgccacatggttttcaa 35883184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 36722809 - 36722897
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| |||||||||||||||| |||||||||| |||||| ||||| || || |||||||||||||||    
T  36722809 tttgaatcaaatgagtgttgattgaagattcaacaagaagatgtattttatgatcaattgactcatcctcgtcgccacatggttttcaa 36722897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 333
Target Start/End: Original strand, 35875737 - 35875881
Alignment:
Q  186 aaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaacc-ga 284  Q
    ||||| |||||||| |||||||| |||||||| |||||| ||||||||||||||||   |||||||||||    ||| |||||| | || ||| |||  |    
T  35875737 aaagacactcaatgaacaagaaacattgtgtggaatcactaagaggaattatgagaagaattgcatcatc----aaacaattcaaggttgatttaccaaa 35875832  T
Q  285 gaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    |||| ||||||| ||| | ||||||||||| |||||||||| |||||||    
T  35875833 gaagatattgtcttcttatatagaagagaacattatcaactttgatgaa 35875881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 333
Target Start/End: Original strand, 35883226 - 35883370
Alignment:
Q  186 aaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaacc-ga 284  Q
    ||||| |||||||| |||||||| |||||||| |||||| ||||||||||||||||   |||||||||||    ||| |||||| | || ||| |||  |    
T  35883226 aaagacactcaatgaacaagaaacattgtgtggaatcactaagaggaattatgagaagaattgcatcatc----aaacaattcaaggttgatttaccaaa 35883321  T
Q  285 gaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    |||| ||||||| ||| | ||||||||||| |||||||||| |||||||    
T  35883322 gaagatattgtcttcttatatagaagagaacattatcaactttgatgaa 35883370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 333
Target Start/End: Original strand, 36722939 - 36723083
Alignment:
Q  186 aaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaacc-ga 284  Q
    ||||| |||||||| |||||||| |||||||| |||||| ||||||||||||||||   |||||||||||    ||| |||||| | || ||| |||  |    
T  36722939 aaagacactcaatgaacaagaaacattgtgtggaatcactaagaggaattatgagaagaattgcatcatc----aaacaattcaaggttgatttaccaaa 36723034  T
Q  285 gaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    |||| ||||||| ||| | ||||||||||| |||||||||| |||||||    
T  36723035 gaagatattgtcttcttatatagaagagaacattatcaactttgatgaa 36723083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 14271486 - 14271571
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggtttt 130  Q
    ||||||||||| ||||||||| |||| ||| || ||||||||||||||||| || |||||| ||||| || |||||||||| ||||    
T  14271486 tttgaatcaaatgagtgttgattgaagattaaaaaagaagatgaattttataatcaattgactcatcctcgtcaccacatgatttt 14271571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 45 - 338
Target Start/End: Complemental strand, 5383294 - 5383007
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaa 144  Q
    ||||||||||| ||||||||| |||| ||||||||||||| |||| ||| ||| |||||||||||||||  |||||||||||||||||| |||| |||||    
T  5383294 tttgaatcaaatgagtgttgaatgaagattcaacaagaaggtgaactttttgagtaattgattcatcattctcaccacatggttttcaacaatgccttaa 5383195  T
Q  145 atat-tcaaggaagaaaatgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagata 243  Q
    |  | |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  5383194 aagtatcaaggaagaaaagacattcctaaactaaaacatctcaaagatactcaatggacaagaaacattgtgtgcaatcaccaagagaaattatgagata 5383095  T
Q  244 tattgcatcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
     || |||||| ||||||||||||||| | || ||||||  ||||  |||||||       ||||||||||| ||||||||||| |||||| ||||    
T  5383094 aatcgcatcaccaacaaaataattcaaggttaattaacgaagaatatattgtc-------atagaagagaacattatcaactccgatgaaagaat 5383007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 161 - 333
Target Start/End: Complemental strand, 26908190 - 26908018
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || |||| |||||||||||||| |    
T  26908190 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagatacattgtgtgcaatcaccaagaggaattgtgtgataaattgcatcatcaacca 26908091  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    ||||||| |   || || ||||||||| |||| ||||||||| |||||||| || ||||||||||| ||||||    
T  26908090 aataatttaatgttaatcaaccgagaatgtatcgtcatctcatatagaagaaaacattatcaactccgatgaa 26908018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 161 - 338
Target Start/End: Complemental strand, 35756370 - 35756194
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| | ||| ||||||||| ||||||||||||||||    
T  35756370 atgcatacctaaactaaaacatctcaaagatactcaatgga-aagaaacattgcgtgcaatcaccaacatgaactatgagataaattgcatcatcaacaa 35756272  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||| | | ||  ||||||||||| ||||||||||| || |||||||| || ||||||||||| |||||| ||||    
T  35756271 aataattaaaggttagttaaccgagaatgtattgtcatcccatatagaagaaaacattatcaactccgatgaaagaat 35756194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 23550168 - 23550271
Alignment:
Q  235 tatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaat 334  Q
    ||||||||| ||||||||||||||||||||||| | | || |||||||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||     
T  23550168 tatgagataaattgcatcatcaacaaaataattaaaggttaattaaccgagaatgtattgtcatcccatatagaagagaacattatcaactccgatgaaa 23550267  T
Q  335 gaat 338  Q
    ||||    
T  23550268 gaat 23550271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 26908442 - 26908328
Alignment:
Q  16 cacagactcaaaagaagatatatcaattatttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatca 115  Q
    |||| ||||||||||||||||| ||||| |||||||||||  |||||||| |||| ||||||| |||| |||||||| ||||| |||||| || || ||     
T  26908442 cacaaactcaaaagaagatatagcaattgtttgaatcaaataagtgttgattgaagattcaactagaatatgaatttgatgatcaattgactcgtcctcg 26908343  T
Q  116 tcaccacatggtttt 130  Q
    |||||||||||||||    
T  26908342 tcaccacatggtttt 26908328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 35756595 - 35756508
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttca 132  Q
    |||||||||||  |||||||| | || ||||||||||||||| ||||||||||| ||||||  |||| || |||||||||||||||||    
T  35756595 tttgaatcaaataagtgttgattaaagattcaacaagaagataaattttatgatcaattgacacatcctcgtcaccacatggttttca 35756508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 48 - 338
Target Start/End: Complemental strand, 7787163 - 7786880
Alignment:
Q  48 gaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaaata 147  Q
    |||||||| ||||||||||| || ||||||||||||||||||  || ||| |||||||||||||||  ||||||||||||||| || |||| |||||| |    
T  7787163 gaatcaaatgagtgttgagtaaagattcaacaagaagatgaaccttttgagtaattgattcatcattctcaccacatggttttgaacaatgccttaaaga 7787064  T
Q  148 ttcaaggaagaaaatgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatatt 247  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| | |||||||||| ||     
T  7787063 ttcaagaaagaaaagacatgcctaaactaaaacatctcaaagatactcaatgtacaagaaacattgtgtgcaatcaccatgagaagttatgagataaatc 7786964  T
Q  248 gcatcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
     ||||| ||||||||||||||| | || ||||||||||||  |||||||       ||||||||||| ||||||||||| |||||| ||||    
T  7786963 acatcaccaacaaaataattcaaggttaattaaccgagaatatattgtc-------atagaagagaacattatcaactccgatgaaagaat 7786880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 161 - 326
Target Start/End: Complemental strand, 36434388 - 36434224
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||| ||||||||| ||||||||||||||||    
T  36434388 atgcatgcctaaactaaaacatctcaaagatactcaatgga-aagaaacattgtgtgcaatcaccaacatgaactatgagataaattgcatcatcaacaa 36434290  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactc 326  Q
    ||||||| | | || |||||||||||| ||||||||||| || |||||| |||| |||||||||||    
T  36434289 aataattaaaggttaattaaccgagaatgtattgtcatcccatatagaatagaacattatcaactc 36434224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 333
Target Start/End: Complemental strand, 9294620 - 9294449
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||| || | ||| ||||||||| ||||||||||||||||    
T  9294620 atgcatggctaaactaaaacatctcaaagatactcaatgga-aagaaacattatgtgcaatcactaacatgaactatgagataaattgcatcatcaacaa 9294522  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    ||||||| |   || ||||||| |||| |||||||||||  | ||| || |||| ||||||||||| ||||||    
T  9294521 aataattaaaagttaattaaccaagaatgtattgtcatcctatatataatagaacattatcaactccgatgaa 9294449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 333
Target Start/End: Complemental strand, 13978611 - 13978438
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatc-aaca 259  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||  ||||||||||||||| | ||  || || |  |||    
T  13978611 atgcatgtctaaactaaaacatttcaaagatactcaatgggcaagaaacattgtgtgaaatcactgagaggaattatgagaaaaatcacaccaccggaca 13978512  T
Q  260 aaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    |||||||||| | || ||| ||| ||||| ||||||| ||||| ||| |||||||  ||||||||| |||||||    
T  13978511 aaataattcaaggttaattgaccaagaagatattgtcttctcatataaaagagaaccttatcaactttgatgaa 13978438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 13978827 - 13978718
Alignment:
Q  47 tgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaaat 146  Q
    ||||||||||||||||| | || | ||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||||||| || | ||||||     
T  13978827 tgaatcaaaagagtgtttattgtagattcaacaagaagatgaattttatgattatttgactcatcctcgtcaccacatggttttcaacaaagccttaaag 13978728  T
Q  147 attcaaggaa 156  Q
    |||| |||||    
T  13978727 attcgaggaa 13978718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 23484536 - 23484624
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| |||| |||| |||| |||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||||    
T  23484536 tttgaatcaaatgagtattgattgaagattcaacaagaagatgtattttatgatcaattgactcatcctcatcaccacatggttttcaa 23484624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 9294844 - 9294757
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttca 132  Q
    ||||||||||| ||||||||| |||| ||||||||||||||| ||||||||||| ||||||  |||| |  |||||||||||||||||    
T  9294844 tttgaatcaaatgagtgttgattgaagattcaacaagaagataaattttatgatcaattgacacatcctggtcaccacatggttttca 9294757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 9307892 - 9307979
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttca 132  Q
    |||||||||||  |||||||| |||| ||| ||||||||||| ||||||||||| ||||||  |||| ||||||||||||||||||||    
T  9307892 tttgaatcaaataagtgttgattgaagatttaacaagaagataaattttatgatcaattgacacatcctcatcaccacatggttttca 9307979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 9308116 - 9308177
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatca 223  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  9308116 atgcatgcctaaactaaaacatatcaaagatactcaatgga-aagaaacattgtgtgcaatca 9308177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 9308174 - 9308262
Alignment:
Q  250 atcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    |||||||||||||||| | | | || |||||||||||| ||||||||||| || ||||||||||| ||||||||||| |||||| ||||    
T  9308174 atcatcaacaaaataaataaagattaattaaccgagaatgtattgtcatcccatatagaagagaacattatcaactccgatgaaagaat 9308262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 333
Target Start/End: Original strand, 23484666 - 23484809
Alignment:
Q  186 aaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgag 285  Q
    ||||| ||| |||| |||||||| |||||||| |||||| |||||||| |||||||   |||| ||||||||    | |||||| | || ||| ||| ||    
T  23484666 aaagacacttaatgaacaagaaacattgtgtggaatcactaagaggaactatgagaagaattgtatcatcaa----acaattcaaggttaattgaccaag 23484761  T
Q  286 aaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    ||| ||||||| ||| | ||||||||||| |||||||||| |||||||    
T  23484762 aagatattgtcttcttatatagaagagaacattatcaactttgatgaa 23484809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 333
Target Start/End: Complemental strand, 13329990 - 13329853
Alignment:
Q  192 actcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgagaaggta 291  Q
    |||||||| |||||| | |||||||| |||||| ||||||||||||| ||   |||||||||||    ||| |||||| | || ||| ||| ||||| ||    
T  13329990 actcaatgaacaagacacattgtgtggaatcactaagaggaattatgggaagaattgcatcatc----aaacaattcaaggttgattgaccaagaagata 13329895  T
Q  292 ttgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    ||||| |||   ||||||||||| |||||||||| |||||||    
T  13329894 ttgtcttcttctatagaagagaacattatcaactttgatgaa 13329853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 161 - 338
Target Start/End: Original strand, 9735476 - 9735653
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  9735476 atgcatgcctaagctaaaacatctcaaagatactcaatggacaagaaacattgtgtgcaatcaccaagagaaattatgtgataaattgcatcatcaacaa 9735575  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||| | | || |||||||||||| |||||||||||||| |||||||| || ||||||||||| |||||| ||||    
T  9735576 aataattaaaggttaattaaccgagaatgtattgtcatctcatatagaagaaaacattatcaactccgatgaaagaat 9735653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 161 - 311
Target Start/End: Complemental strand, 4314738 - 4314588
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||| ||||||||||||||| |||| ||||||||||| ||||    
T  4314738 atgcatgcctaaactaaaacatctcaaagatactcaacgaacaagaaaaattttgtgcaatccccaagaggaattatgtgataaattgcatcatcgacaa 4314639  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaaga 311  Q
    || |||||| | ||  ||||||||||| ||||| |||||||| ||||||||    
T  4314638 aacaattcaaggttagttaaccgagaatgtattatcatctcatatagaaga 4314588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 4315046 - 4314934
Alignment:
Q  49 aatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaaatat 148  Q
    ||||||||||||||||| |||| | |||||||||||||||||| ||||||||||||||| ||| || |||||||||| ||||||| || | |||||| ||    
T  4315046 aatcaaaagagtgttgattgaagaatcaacaagaagatgaattatatgattaattgatttatcctcgtcaccacatgtttttcaacaaagccttaaagat 4314947  T
Q  149 tcaaggaagaaaa 161  Q
    || ||||||||||    
T  4314946 tctaggaagaaaa 4314934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 28343551 - 28343652
Alignment:
Q  49 aatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaaatat 148  Q
    ||||||| |||||||||  ||| ||||||||||||||||||||||||||| |||||| ||||| || |||||||||||||||||| || |||||||| ||    
T  28343551 aatcaaatgagtgttgatcgaagattcaacaagaagatgaattttatgatcaattgactcatcctcttcaccacatggttttcaacaaagtcttaaagat 28343650  T
Q  149 tc 150  Q
    ||    
T  28343651 tc 28343652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 314
Target Start/End: Complemental strand, 8981048 - 8980904
Alignment:
Q  170 taaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattca 269  Q
    |||||| |||||||||||||||| |||| ||| |||||| |  ||||||||||||||||| |||||||||||  ||||| | |||| |||||||||||||    
T  8981048 taaacttaaacatctcaaagatattcaacggataagaaacagagtgtgcaatcaccaagatgaattatgagaagtattgtagcatcgacaaaataattca 8980949  T
Q  270 ggcttcattaaccgagaaggtattgtcatctcaaatagaagagaa 314  Q
       || ||| ||| ||||  ||||||||||||| |||||||||||    
T  8980948 aagttaattgaccaagaaaatattgtcatctcatatagaagagaa 8980904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 8981366 - 8981259
Alignment:
Q  49 aatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaaatat 148  Q
    |||||||||||| |||| |||| ||| ||||||  |||||   | |||||||||||||||||| |||||| | |||||||||||| || |||||||| ||    
T  8981366 aatcaaaagagtattgattgaagatttaacaagctgatgagaataatgattaattgattcatcctcatcatcgcatggttttcaacaaagtcttaaagat 8981267  T
Q  149 tcaaggaa 156  Q
    ||||||||    
T  8981266 tcaaggaa 8981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 333
Target Start/End: Original strand, 32816599 - 32816742
Alignment:
Q  186 aaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgag 285  Q
    |||||||||||||| |||||||| ||||| || ||||||  ||||||||||||| |   |||||||||||    |||||||||| | || ||||||| ||    
T  32816599 aaagatactcaatgcacaagaaatattgtttggaatcactgagaggaattatgataagaattgcatcatc----aaataattcaaggttaattaaccaag 32816694  T
Q  286 aaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    ||| |  |||| ||||| |||||||||||  ||||||||| |||||||    
T  32816695 aagatggtgtcttctcatatagaagagaaccttatcaactttgatgaa 32816742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 9735257 - 9735345
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||| | |||| |||||||||||| ||  |||||||||| |||||| ||||| || ||||| ||||||||||||    
T  9735257 tttgaatcaaatgagtgtttattgaagattcaacaagaaaatatattttatgatcaattgactcatcctcgtcaccgcatggttttcaa 9735345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 32816469 - 32816557
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    |||| |||||| || |||||| || | |||||||||||| ||| |||||||||| |||||| ||||| || ||||||||||||||||||    
T  32816469 tttgtatcaaatgaatgttgattgtagattcaacaagaaaatgtattttatgatcaattgactcatcctcgtcaccacatggttttcaa 32816557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 48714417 - 48714346
Alignment:
Q  186 aaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaa 257  Q
    ||||| |||||||| |||| ||| |||||||| |||||| |||||||||||||||| | |||||||||||||    
T  48714417 aaagacactcaatgaacaataaacattgtgtggaatcactaagaggaattatgagaaaaattgcatcatcaa 48714346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 48714544 - 48714459
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| ||||||||||||   | |||||||||| |||||| ||||| || ||||||||||||| ||||    
T  48714544 tttgaatcaaatgagtgttgattgaagattcaacaagaa---gtattttatgatcaattgactcatcctcgtcaccacatggttctcaa 48714459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 2890238 - 2890289
Alignment:
Q  82 aagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    |||||| |||||||||| |||||| ||||| || ||||||||||||||||||    
T  2890238 aagatgtattttatgatcaattgactcatcctcgtcaccacatggttttcaa 2890289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 25901819 - 25901763
Alignment:
Q  213 gtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattca 269  Q
    |||||||||||| |||||| ||||||||| ||||||| |||| | ||||||| ||||    
T  25901819 gtgtgcaatcacgaagaggtattatgagaaatattgcgtcattagcaaaatagttca 25901763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 161 - 333
Target Start/End: Original strand, 2850091 - 2850263
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  2850091 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagatacattgtgtgcaatcaccaagaggaattatgtgataaattgcatcatcaacaa 2850190  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    ||||||||| | || ||||| | |||||||||| |||||| | ||||||||||| || |||||||||||||||    
T  2850191 aataattcaaggttaattaatcaagaaggtattatcatcttatatagaagagaacatcatcaactctgatgaa 2850263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 45 - 338
Target Start/End: Original strand, 14097225 - 14097501
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaa 144  Q
    ||||||||||| ||||||||| |||| ||| |||||||||||||| ||| | | |||||||||||||||  |||| ||||||||||||| |||| |||||    
T  14097225 tttgaatcaaacgagtgttgactgaagatttaacaagaagatgaactttcttagtaattgattcatcattctcacaacatggttttcaacaatgccttaa 14097324  T
Q  145 atattcaaggaagaaaatgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatat 244  Q
    | |||||||       ||   |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||||||     
T  14097325 agattcaag-------at---tgcctaaactaaaacatctcaaagatactcaatggacaggaaatattgtgtgcaatcaccaaaagaaattatgagataa 14097414  T
Q  245 attgcatcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    || |||||| ||||||||||||||| | || ||||||||||||  |||||||       ||||||||||| ||||||||||| |||||| ||||    
T  14097415 atcgcatcaacaacaaaataattcaaggttaattaaccgagaatatattgtc-------atagaagagaacattatcaactccgatgaaagaat 14097501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 2849868 - 2849979
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaa 144  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||| || |||| ||||||||||||| || | |||||    
T  2849868 tttgaatcaaatgagtgttgattgaagattcaacaagaagatgaattttatgatcaattgactcatcctcgtcacgacatggttttcaacaaagccttaa 2849967  T
Q  145 atattcaaggaa 156  Q
    | |||| |||||    
T  2849968 agattcgaggaa 2849979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 2847101 - 2847189
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||| |  ||||||| ||||||||||    
T  2847101 tttgaatcaaatgagtgttgattgaagattcaacaagaagatgaattttatgatcaattgactcatccttgtcaccacttggttttcaa 2847189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 333
Target Start/End: Complemental strand, 17514265 - 17513992
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaa 144  Q
    ||||||||||| || |||||| |||| |||||||||||||||| |||||||||| |||||| ||||| |  |||||||||||||||||| || | |||||    
T  17514265 tttgaatcaaatgaatgttgattgaagattcaacaagaagatgtattttatgatcaattgactcatccttgtcaccacatggttttcaacaaagccttaa 17514166  T
Q  145 at-attcaaggaagaaaatgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagata 243  Q
    |  |||| ||||| |||  |              || || | ||||| |||||||| |||||||| |||||||| |||||| ||||||||||||||||      
T  17514165 aagattcgaggaataaagggtt------------aatatttgaaagacactcaatgaacaagaaacattgtgtggaatcactaagaggaattatgagaag 17514078  T
Q  244 tattgcatcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
     |||||||||||    ||| |||||| | || ||| ||| ||||| ||||||| ||| | ||||||||||| |||||||||| |||||||    
T  17514077 aattgcatcatc----aaacaattcaaggttgattgaccaagaagatattgtcttcttatatagaagagaacattatcaactttgatgaa 17513992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 161 - 326
Target Start/End: Original strand, 11221904 - 11222069
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| | || ||||||||||||||||    
T  11221904 atgcatgcctaagctaaaacatctcaaagatactcaatggacaaaaaacattgtgtgcaatcaccaagagaaattatgtgctaaattgcatcatcaacaa 11222003  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactc 326  Q
    ||||||||| | || |||||||||||| |||||||||||||| |||||||| || |||||||||||    
T  11222004 aataattcacggttaattaaccgagaatgtattgtcatctcatatagaagaaaacattatcaactc 11222069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 161 - 338
Target Start/End: Complemental strand, 42734157 - 42733981
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||| ||||||||||||||||    
T  42734157 atgcatgcctaagctaaaacatctcaaggatactcaatggacaagaaacattgtgtgcaatcac-aagagaaattatgtgataaattgcatcatcaacaa 42734059  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||||| | || |||||||||||| |||||||||||||| |||||||| || ||||||||||| |||||| ||||    
T  42734058 aataattcaaggttaattaaccgagaatgtattgtcatctcatatagaagaaaacattatcaactccgatgaaagaat 42733981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 161 - 338
Target Start/End: Original strand, 2640939 - 2641115
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||| ||||||||| ||||||||||||||||    
T  2640939 atgcatgcctaaactaaaacatctcaaagatactcaatgga-aagaaacattgtgtgcaatcaccaacatgaactatgagataaattgcatcatcaacaa 2641037  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||| | | || ||| |||||||| ||||||||||| || ||||||||||| ||||| ||||| |||||| ||||    
T  2641038 aataattaaaggttaatttaccgagaatgtattgtcatcccatatagaagagaacattattaactccgatgaaagaat 2641115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 26649088 - 26649228
Alignment:
Q  186 aaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgag 285  Q
    ||||| |||||||| |||||||| | ||||||||||||||||||| |||||||||| | ||  ||||||||||||||||||||| | || ||||| ||||    
T  26649088 aaagacactcaatgaacaagaaacactgtgtgcaatcaccaagagaaattatgagacaaatcacatcatcaacaaaataattcaaggttaattaagcgag 26649187  T
Q  286 aaggtattgtcatctcaaatagaagagaagattatcaactc 326  Q
    |  |||||||||||||| ||||||||||| ||||| |||||    
T  26649188 agtgtattgtcatctcatatagaagagaacattattaactc 26649228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 26920673 - 26920813
Alignment:
Q  186 aaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgag 285  Q
    ||||| |||||||| |||||||| | ||||||||||||||||||| |||||||||| | ||  ||||||||||||||||||||| | || ||||| ||||    
T  26920673 aaagacactcaatgaacaagaaacactgtgtgcaatcaccaagagaaattatgagacaaatcacatcatcaacaaaataattcaaggttaattaagcgag 26920772  T
Q  286 aaggtattgtcatctcaaatagaagagaagattatcaactc 326  Q
    |  |||||||||||||| ||||||||||| ||||| |||||    
T  26920773 agtgtattgtcatctcatatagaagagaacattattaactc 26920813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 14914987 - 14915056
Alignment:
Q  11 agcagcacagactcaaaagaagatatatcaattatttgaatcaaaagagtgttgagtgaatattcaacaa 80  Q
    |||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||    
T  14914987 agcatcacaaactcaaaagaagatatatcaattgtttgactcaaaagagtgttgagtcaagattcaacaa 14915056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 11221691 - 11221802
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaa 144  Q
    ||||||||||| ||||||| | |||| |||||||||||||||  |||||||||  |||||| ||||| ||| |||| | |||||||||| || |||||||    
T  11221691 tttgaatcaaatgagtgtttattgaagattcaacaagaagatatattttatgagcaattgactcatcctcaccaccgcttggttttcaataaagtcttaa 11221790  T
Q  145 atattcaaggaa 156  Q
    | |||| |||||    
T  11221791 agattcgaggaa 11221802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 26648959 - 26649046
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| |||||||||||| ||  ||||| |||| |||||| ||||| || ||||||||||||||||||    
T  26648959 tttgaatcaaatgagtgttgattgaagattcaacaagaatatttatttt-tgatcaattgactcatcctcgtcaccacatggttttcaa 26649046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 26920544 - 26920631
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| |||||||||||| ||  ||||| |||| |||||| ||||| || ||||||||||||||||||    
T  26920544 tttgaatcaaatgagtgttgattgaagattcaacaagaatatttatttt-tgatcaattgactcatcctcgtcaccacatggttttcaa 26920631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 42734376 - 42734271
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaa 144  Q
    ||||||||||| ||||||| | |||| |||||||||||||||  |||||||||  |||||| ||||| |||| ||  | |||||||||| || |||||||    
T  42734376 tttgaatcaaatgagtgtttattgaagattcaacaagaagatatattttatgagcaattgactcatcctcataacggcttggttttcaataaagtcttaa 42734277  T
Q  145 atattc 150  Q
    | ||||    
T  42734276 agattc 42734271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 161 - 333
Target Start/End: Complemental strand, 16255 - 16083
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| || |||||||||||||    
T  16255 atgcatgcttaaactaaaacatctcaaagatactcaatggacaagaaacattgtgtgcaaccaccaagagaaattatgagataaatcgcatcatcaacaa 16156  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    ||||| ||| | || |||||||||||| |||||||||||||| |||||| |||| || |||||||| ||||||    
T  16155 aataagtcaaggttaattaaccgagaatgtattgtcatctcatatagaaaagaacatcatcaactccgatgaa 16083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 16478 - 16393
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggtttt 130  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||    
T  16478 tttgaatcaaatgagtgttgattgaagattcaacaagaagatgaattttataatcaattgactcatcctcatcaccacatggtttt 16393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 161 - 326
Target Start/End: Original strand, 28069370 - 28069534
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||| ||||||||| ||||||||||||||||    
T  28069370 atgcatgcctaaactaaaacatctcaaagatactcaatgga-aagaaacattgtgtgcaatcaccaacatgaaatatgagataaattgcatcatcaacaa 28069468  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactc 326  Q
    ||||||| | | || |||||||||||| ||||||||||| || ||||||||||| |||||||||||    
T  28069469 aataattaaaggttaattaaccgagaatgtattgtcatcccatatagaagagaacattatcaactc 28069534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 161 - 338
Target Start/End: Complemental strand, 50066428 - 50066252
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||| ||||||||| ||| ||||||||||||    
T  50066428 atgcatgtctaaactaaaacatctcaaagatactcaatgga-aagaaacattgtgtgcaatcaccaacatgaactatgagataaattccatcatcaacaa 50066330  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||| | | || |||||||||||| ||||||||||| || ||||||||||| |||||||||| ||||||| ||||    
T  50066329 aataattaaaggttaattaaccgagaatgtattgtcatcccatatagaagagaacattatcaactatgatgaaagaat 50066252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 161 - 338
Target Start/End: Original strand, 25514628 - 25514803
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| | ||| ||||||||| |||| | |||||||||    
T  25514628 atgcatacctaaactaaaacatctcaaagatactcaatgga-aagaaacattgtgtgcaatcgccaacatgaactatgagataaattgtaccatcaacaa 25514726  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||| | | || |||||||||||| ||||||||||| || ||||||||||| ||||||||||| |||||| ||||    
T  25514727 aataattaaaggttaattaaccgagaatgtattgtcatc-catatagaagagaacattatcaactccgatgaaagaat 25514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 195 - 333
Target Start/End: Original strand, 11480852 - 11480990
Alignment:
Q  195 caatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgagaaggtattg 294  Q
    |||||||||||| | ||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||| | || ||||||||||||  |||||    
T  11480852 caatggacaagatacattgtgtgcaatcaccaagagaaattatgtgataaattgcataatcaacaaaataattcaaggttaattaaccgagaatatattg 11480951  T
Q  295 tcatctcaaatagaagagaagattatcaactctgatgaa 333  Q
    |||||||| ||||||||||| ||||||||||| ||||||    
T  11480952 tcatctcatatagaagagaacattatcaactccgatgaa 11480990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 161 - 333
Target Start/End: Complemental strand, 50518784 - 50518611
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||||||||||||||||||||||||||||  |||||||||| | | ||||||||||||||||||||| ||||||| |||| ||||||||||| ||||    
T  50518784 atgcatgcctaaactaaaacatctcaaagatatgcaatggacaaaatacattgtgtgcaatcaccaagagaaattatgtgataaattgcatcatcgacaa 50518685  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaat-agaagagaagattatcaactctgatgaa 333  Q
    || || ||| | || ||||| | ||||||||||||||||||| || | || |||| ||||||||||| ||||||    
T  50518684 aaaaaatcaaggttaattaatcaagaaggtattgtcatctcatataaaaaaagaacattatcaactccgatgaa 50518611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 170 - 338
Target Start/End: Original strand, 7580352 - 7580521
Alignment:
Q  170 taaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattc- 268  Q
    |||||| ||||||||||||||||||||| ||| ||||||    ||||||||||||||| | |||||||||||  ||||| |||||| ||||| ||||||     
T  7580352 taaacttaaacatctcaaagatactcaacggataagaaacggagtgtgcaatcaccaacatgaattatgagaagtattgtatcatcgacaaagtaattca 7580451  T
Q  269 -aggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
     | || | ||| ||| ||||| ||||||||||||| ||||||||||| ||||| |||||| ||||| ||||    
T  7580452 aaagc-taattgaccaagaagatattgtcatctcatatagaagagaacattattaactcttatgaaagaat 7580521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 11477904 - 11478009
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaa 144  Q
    |||||||||||  |||||| | |||||||||||||||||||||||||||||||| |||||||||||| || |||||| |||||||| |  || | |||||    
T  11477904 tttgaatcaaataagtgttcattgaatattcaacaagaagatgaattttatgatcaattgattcatcctcgtcaccatatggtttttagcaaagccttaa 11478003  T
Q  145 atattc 150  Q
    ||||||    
T  11478004 atattc 11478009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 50519008 - 50518923
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggtttt 130  Q
    |||||||||||  |||||||| |||| ||||||||||||||||||||||||||| |||||| ||||| || |||||||||||||||    
T  50519008 tttgaatcaaataagtgttgattgaagattcaacaagaagatgaattttatgatcaattgactcatcctcctcaccacatggtttt 50518923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 28069146 - 28069233
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttca 132  Q
    ||||||||||| ||||||||| |||| ||||||||||| ||| ||||||||||| ||||||  |||| || |||||||||||||||||    
T  28069146 tttgaatcaaatgagtgttgattgaagattcaacaagaggataaattttatgatcaattgacacatcctcgtcaccacatggttttca 28069233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 338
Target Start/End: Complemental strand, 34495548 - 34495375
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||||||||||||||||||||||||||||| ||||| |  | ||| |  |||| |||||||| ||| |||||||||||   |||||||| |   |||    
T  34495548 atgcatgcctaaactaaaacatctcaaagatacgcaatgcagtaaaaacaccgtgtacaatcaccgagatgaattatgagaataattgcatcgt---caa 34495452  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||||||  || | | ||| ||||| ||||||| ||||| ||||| ||||| |||||||||| ||||||| ||||    
T  34495451 aataattcagagtt-aatgaccaagaagatattgtcttctcatatagatgagaacattatcaactttgatgaaagaat 34495375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 34495828 - 34495747
Alignment:
Q  77 acaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaaatattcaaggaaga 158  Q
    |||||||||||| |||||||||||||||||||||| || |||||||||| ||||||| || | | |||| ||||||||||||    
T  34495828 acaagaagatgatttttatgattaattgattcatcctcgtcaccacatgattttcaacaaagccataaaaattcaaggaaga 34495747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 25254657 - 25254588
Alignment:
Q  182 tctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcat 251  Q
    ||||||||||||||| ||||||||||| |  |||||||| |||||||||||||||||| | |||||||||    
T  25254657 tctcaaagatactcattggacaagaaataaagtgtgcaaacaccaagaggaattatgaaagatattgcat 25254588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 7580033 - 7580141
Alignment:
Q  48 gaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaaata 147  Q
    ||||||||||||| |||| |||| ||||||||||  || ||   | |||||||||||||||||  |||||| | |||||||||||| || |||||||| |    
T  7580033 gaatcaaaagagtattgattgaagattcaacaagccgacgagaataatgattaattgattcatactcatcatcgcatggttttcaacaaagtcttaaaga 7580132  T
Q  148 ttcaaggaa 156  Q
    |||||||||    
T  7580133 ttcaaggaa 7580141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 25514405 - 25514492
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttca 132  Q
    |||||||||||  |||||||| |||| ||| ||||||||||| ||||||||||| ||||||  |||| || ||||||||| |||||||    
T  25514405 tttgaatcaaataagtgttgattgaagatttaacaagaagataaattttatgatcaattgacacatcctcgtcaccacatagttttca 25514492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 50066652 - 50066565
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttca 132  Q
    |||||||||||  |||||||| |||| ||| |||||||| || ||||||||||| ||||||  |||| || |||||||||||||||||    
T  50066652 tttgaatcaaataagtgttgattgaagatttaacaagaaaataaattttatgatcaattgacacatcctcgtcaccacatggttttca 50066565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 9243722 - 9243796
Alignment:
Q  170 taaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatat 244  Q
    |||||||| ||||||||| |||||| |||| |||||||| | ||||||||| |||| |||| |||||||||||||    
T  9243722 taaactaatacatctcaatgatacttaatgaacaagaaacaatgtgtgcaaacaccgagagaaattatgagatat 9243796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 28257966 - 28257857
Alignment:
Q  41 attatttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtc 140  Q
    |||||||||||||||  |||||||| |||| ||||||||  || |||||||| |||||||||||| || || || |||| |||| |||||||| || | |    
T  28257966 attatttgaatcaaataagtgttgattgaagattcaacagaaatatgaatttcatgattaattgactcgtcctcgtcacgacatagttttcaacaaagcc 28257867  T
Q  141 ttaaatattc 150  Q
    ||||| ||||    
T  28257866 ttaaagattc 28257857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 11478127 - 11478167
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatgga 201  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  11478127 atgcatgcctaaactaaaacatctcaaagatacgcaatgga 11478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 5211790 - 5211747
Alignment:
Q  46 ttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaa 89  Q
    ||||||||||||||||| || |||| ||||||||||||||||||    
T  5211790 ttgaatcaaaagagtgtagattgaagattcaacaagaagatgaa 5211747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 9245645 - 9245685
Alignment:
Q  290 tattgtcatctcaaatagaagagaagattatcaactctgat 330  Q
    ||||||| ||||| ||||||||||| |||||||||||||||    
T  9245645 tattgtcgtctcatatagaagagaaaattatcaactctgat 9245685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 28257833 - 28257789
Alignment:
Q  186 aaagatactcaatggacaagaaagattgtgtgcaatcaccaagag 230  Q
    ||||||||||||||||||||||| ||||| || |||||| |||||    
T  28257833 aaagatactcaatggacaagaaacattgtatggaatcactaagag 28257789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 161 - 338
Target Start/End: Complemental strand, 11717 - 11541
Alignment:
Q  161 atgcatgcctaaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||| |||||||||  |||||||||||||||    
T  11717 atgcatgcctaaactaaaacatctcaaagatactcaatgga-aagaaatattgtgtgcaatcaccaacatgaactatgagataatttgcatcatcaacaa 11619  T
Q  261 aataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaagagaagattatcaactctgatgaatgaat 338  Q
    ||||||| | | || ||||||||||||  ||||||||||  | ||||||||||| ||||||||||| |||||| ||||    
T  11618 aataattaaaggttaattaaccgagaatatattgtcatcctatatagaagagaacattatcaactccgatgaaagaat 11541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 11942 - 11838
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaa 144  Q
    ||||||| ||| ||||||||| |||| ||||||||||||||| ||||||||||| ||||||  |||| |  |||||||||||||||||  || | |||||    
T  11942 tttgaattaaatgagtgttgattgaagattcaacaagaagataaattttatgatcaattgacacatccttgtcaccacatggttttcatcaaagccttaa 11843  T
Q  145 atatt 149  Q
    |||||    
T  11842 atatt 11838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0842 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0842
Description:

Target: scaffold0842; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 3051 - 3163
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaa 144  Q
    ||||||||||||||||||||| | || ||||||    |||||||||||||||||||||||||||||| ||||||||||||||||||||| || | |||||    
T  3051 tttgaatcaaaagagtgttgattaaagattcaa----aagatgaattttatgattaattgattcatcctcatcaccacatggttttcaacaaagccttaa 3146  T
Q  145 atattcaaggaagaaaa 161  Q
    | ||| |||||||||||    
T  3147 agatttaaggaagaaaa 3163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 3121 - 3209
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaa 133  Q
    ||||||||||| ||||||||| |||| ||| |||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||||    
T  3121 tttgaatcaaatgagtgttgattgaagattaaacaagaagatgtattttatgatcaattgactcatcctcatcaccacatggttttcaa 3209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 2404 - 2491
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttca 132  Q
    ||||||||||||||||||||| |||  |||||| |||  |||||  || |||||||||||||||||  || |||||||||| ||||||    
T  2404 tttgaatcaaaagagtgttgattgatgattcaaaaagctgatgagattaatgattaattgattcattctcctcaccacatgattttca 2491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 2611 - 2652
Alignment:
Q  290 tattgtcatctcaaatagaagagaagattatcaactctgatg 331  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||    
T  2611 tattgtcgtctcatatagaagagaacattatcaactctgatg 2652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 1354 - 1243
Alignment:
Q  45 tttgaatcaaaagagtgttgagtgaatattcaacaagaagatgaattttatgattaattgattcatcatcatcaccacatggttttcaaaaatgtcttaa 144  Q
    ||||||| |||||||||| || | || |||||| |||  |||||  || |||||||||||||||||  || |||||||||| ||||||||||   |||||    
T  1354 tttgaatgaaaagagtgtcgattaaagattcaaaaagctgatgagattaatgattaattgattcattctcctcaccacatgattttcaaaaaatccttaa 1255  T
Q  145 atattcaaggaa 156  Q
    | ||||||||||    
T  1254 agattcaaggaa 1243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 3301 - 3227
Alignment:
Q  170 taaactaaaacatctcaaagatactcaatggacaagaaagattgtgtgcaatcaccaagaggaattatgagatat 244  Q
    |||||||| |||||||||||||||| |||| || ||||| | ||||||||| |||| |||  |||||||||||||    
T  3301 taaactaatacatctcaaagatacttaatgaacgagaaacaatgtgtgcaaacaccgagaaaaattatgagatat 3227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 1147 - 1106
Alignment:
Q  290 tattgtcatctcaaatagaagagaagattatcaactctgatg 331  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  1147 tattgtcgtctcaaatagaagagaaaattatcaactctgatg 1106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 333
Target Start/End: Original strand, 399 - 518
Alignment:
Q  210 attgtgtgcaatcaccaagaggaattatgagatatattgcatcatcaacaaaataattcaggcttcattaaccgagaaggtattgtcatctcaaatagaa 309  Q
    |||||||| |||||| ||||| ||||||||||   |||||||||||||    | |||||| | || ||| ||| ||||| ||||||| ||| | ||||||    
T  399 attgtgtggaatcactaagagaaattatgagaagaattgcatcatcaa----acaattcaaggttgattgaccaagaagatattgtcttcttatatagaa 494  T
Q  310 gagaagattatcaactctgatgaa 333  Q
    ||||| |||||||||| |||||||    
T  495 gagaacattatcaactttgatgaa 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University