View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15541_high_25 (Length: 344)

Name: NF15541_high_25
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15541_high_25
NF15541_high_25
[»] chr3 (2 HSPs)
chr3 (23-329)||(32412232-32412538)
chr3 (40-296)||(6907136-6907392)
[»] chr8 (13 HSPs)
chr8 (24-301)||(7165937-7166214)
chr8 (24-319)||(3408590-3408885)
chr8 (28-318)||(3326257-3326547)
chr8 (29-319)||(3263803-3264093)
chr8 (74-301)||(3268546-3268773)
chr8 (27-306)||(3313375-3313654)
chr8 (27-316)||(3392859-3393148)
chr8 (29-301)||(13786168-13786440)
chr8 (27-226)||(3287728-3287927)
chr8 (27-316)||(3362735-3363024)
chr8 (29-319)||(31174363-31174653)
chr8 (29-319)||(3399895-3400185)
chr8 (27-292)||(13807436-13807701)
[»] chr2 (1 HSPs)
chr2 (29-318)||(14768192-14768482)
[»] scaffold0468 (1 HSPs)
scaffold0468 (29-319)||(7531-7821)
[»] chr5 (5 HSPs)
chr5 (41-259)||(30416505-30416723)
chr5 (29-190)||(15801625-15801786)
chr5 (41-325)||(20810613-20810897)
chr5 (27-174)||(12596389-12596536)
chr5 (29-325)||(20836968-20837264)
[»] chr7 (2 HSPs)
chr7 (32-318)||(8373008-8373294)
chr7 (96-199)||(36215342-36215445)
[»] chr6 (7 HSPs)
chr6 (96-199)||(5356066-5356169)
chr6 (28-230)||(5424171-5424373)
chr6 (96-230)||(5068524-5068658)
chr6 (137-208)||(5175306-5175377)
chr6 (137-208)||(5277133-5277204)
chr6 (138-199)||(5104364-5104425)
chr6 (110-199)||(5133369-5133458)
[»] chr4 (1 HSPs)
chr4 (258-319)||(6665703-6665764)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 23 - 329
Target Start/End: Original strand, 32412232 - 32412538
Alignment:
Q  23 aaccgttattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaat 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32412232 aaccgttattccaatgtcagcataaagtccacgcccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaat 32412331  T
Q  123 atatccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32412332 atatccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttg 32412431  T
Q  223 tccattctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagttcggt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32412432 tccattctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagttcagt 32412531  T
Q  323 aaagtat 329  Q
    |||||||    
T  32412532 aaagtat 32412538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 40 - 296
Target Start/End: Original strand, 6907136 - 6907392
Alignment:
Q  40 cagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatccttttccatatc 139  Q
    ||||| |||||||||| || |||||||||| |||||||||| | ||||||||||||||||||||| ||||||  |||||||||||| |||| |   | ||    
T  6907136 cagcaaaaagtccacaaccgtttagtatctcggtaacatagtctctgtccttgccgataaagaaacaacatacatcaagaaatatagccttctttgtgtc 6907235  T
Q  140 atcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccattctctttttgtc 239  Q
    |||  | ||||| |||||||||||| | | ||||||||| ||||  ||||  |||||| | ||||  ||||| |  |||||| ||||||||  |||||||    
T  6907236 atctgtcaaaccatcatagcttattttcaatttctcttgcacttcttcatggggaattttttctaactttgatagcacacttttccattcttcttttgtc 6907335  T
Q  240 cttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaa 296  Q
    ||| || ||||||||||||| |||| ||||| ||| |  || |||||||||||||||    
T  6907336 ctttcaaataagtaagatccgaggacttcaacagccaagggtaatcctccacagtaa 6907392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 7165937 - 7166214
Alignment:
Q  24 accgttattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaata 123  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||| || |||||||||||||||||| ||||||| ||||||||||    
T  7165937 accgttattccaatgtcagcataaagtccacaaccatttagtatctcagtaacataggctctatccttgccgataaagaaacaacatatatcaagaaata 7166036  T
Q  124 tatccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgt 223  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| |||  | | |||||||      
T  7166037 tatcctttgccatatcatcctttaaaccgtcatagcttattctcagtttctcttgcacttgatcattgggaattctctctaatttcaagagtacactttc 7166136  T
Q  224 ccattctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaac 301  Q
    |||||||  ||||||||| || ||||||||||| || | || ||||||||| ||||| ||||||||||| || |||||    
T  7166137 ccattcttgttttgtcctcccgtataagtaagaaccgatgacttcaagagccagtggtaatcctccacaataggcaac 7166214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 24 - 319
Target Start/End: Original strand, 3408590 - 3408885
Alignment:
Q  24 accgttattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaata 123  Q
    |||| ||||||||| ||||||||||||||||| |||||||||||||  |||||||||||||||||||| || ||||||||| |||| |||||||||||||    
T  3408590 accgctattccaatatcagcataaagtccacagccatttagtatctctgtaacataggccctgtccttaccaataaagaaacaacaaatgtcaagaaata 3408689  T
Q  124 tatccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgt 223  Q
    |||||||| ||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| |||||||||||||  ||||| | ||| ||| |    
T  3408690 tatcctttaccatatcatcctttaaaccatcatagcttattctcagcttctcgtgcacttgatcattgggaattctctctaactttgatagtacgcttat 3408789  T
Q  224 ccattctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagttc 319  Q
    |||||||  |||||||||  || ||||||| |||||||||| ||||||||| ||||| || |||||||| |||||| | |||||||| ||||||||    
T  3408790 ccattcttgttttgtcctctcaaataagtaggatccaaggacttcaagagccagtggtaaccctccacaataagcagccacatttcttgagagttc 3408885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 28 - 318
Target Start/End: Original strand, 3326257 - 3326547
Alignment:
Q  28 ttattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatc 127  Q
    |||||||||| |  |||||||||||||| |||||||||||||  ||||| | ||| || |||||||| ||||||||| ||||||||||||||||||||||    
T  3326257 ttattccaatatttgcataaagtccacagccatttagtatctctgtaacttcggctctatccttgcctataaagaaacaacatatgtcaagaaatatatc 3326356  T
Q  128 cttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccat 227  Q
     ||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||| ||||| ||||||||||||| |||  | | ||||||| |||||    
T  3326357 tttttccatatcatcctttaaaccatcgtagctaattctcagtttctcttgcacttgatcattgggaattctctctaatttcaagagtacacttatccat 3326456  T
Q  228 tctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagtt 318  Q
    |||  |||||||||  |||||||||| || ||||||| ||||||||||| ||| ||||||||||| |||||||| || ||| | |||||||    
T  3326457 tcttgttttgtcctctcatataagtatgaaccaaggacttcaagagcaactggtaatcctccacaataagcaactacttttttggagagtt 3326547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 319
Target Start/End: Original strand, 3263803 - 3264093
Alignment:
Q  29 tattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatcc 128  Q
    |||||||||  |||||| ||||||||| ||||| |||||||  || || || || ||||| ||||||||||||||| |||||||||||||||||||||||    
T  3263803 tattccaataacagcatgaagtccacagccattaagtatctctgttacgtaagctctgtctttgccgataaagaaacaacatatgtcaagaaatatatcc 3263902  T
Q  129 ttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccatt 228  Q
    ||||||||| ||||||||||||| || || |||||||| || |||||||| ||||| ||||| ||||||||||||| |||||| | || ||||  |||||    
T  3263903 ttttccataccatcctttaaaccatcgtaacttattctcagcttctcttgcacttgatcattgggaattctctctaattttgagagtatactttcccatt 3264002  T
Q  229 ctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagttc 319  Q
    ||  |||||||||  |||| || ||||| || |||| ||| ||||| ||||| |||||||  || |||||||| || ||||| ||||||||    
T  3264003 cttcttttgtcctctcatacaactaagaacctaggacttccagagccagtggtaatcctctgcaataagcaactacgtttcttgagagttc 3264093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 74 - 301
Target Start/End: Original strand, 3268546 - 3268773
Alignment:
Q  74 aacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatccttttccatatcatcctttaaaccgtcatagcttattcttagtttc 173  Q
    |||||| || |||||||| || ||||||||| ||||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||||||||||||    
T  3268546 aacatatgctctgtccttaccaataaagaaacaacatatgtcaagaaatatatccttttctgtatcattctttaaaccatcatagcttattcttagtttc 3268645  T
Q  174 tcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccattctctttttgtccttccatataagtaagatccaaggatttcaagag 273  Q
    || || ||||  ||||  || ||||||||||  ||||| ||||||||| ||||||||  | |||||||  ||   ||||||||||||| || ||||||||    
T  3268646 tcatgcactttatcatcgggtattctctctaactttgataatacacttatccattcttgtattgtcctgtcacgcaagtaagatccaatgacttcaagag 3268745  T
Q  274 caagtggcaatcctccacagtaagcaac 301  Q
    | ||||| ||||||| ||||||| ||||    
T  3268746 ccagtggtaatcctctacagtaaacaac 3268773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 306
Target Start/End: Complemental strand, 3313654 - 3313375
Alignment:
Q  27 gttattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatat 126  Q
    ||||||||||| ||||||| ||||||||| ||||||||||| || || ||||| || || ||||| |||||||||||| |||| |  |||||||||||||    
T  3313654 gttattccaatatcagcatgaagtccacaaccatttagtatatttgtgacatatgctctatccttaccgataaagaaacaacacacatcaagaaatatat 3313555  T
Q  127 ccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtcca 226  Q
    |||||||||||| |||| ||||||||||| |||||||| |||||||||| |||| ||| |||||||| ||  | ||||| ||||| ||||||||   |||    
T  3313554 ccttttccatatgatcccttaaaccgtcaaagcttatttttagtttctcatgtatttgatcattaggtatcttttctagctttgataatacactctgcca 3313455  T
Q  227 ttctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacat 306  Q
     |||  |||| ||||     | |||||||||||||||| ||||||||| ||||||| ||| ||||| || ||||| ||||    
T  3313454 ctcttgttttctcctcttgaacaagtaagatccaaggacttcaagagctagtggcagtccaccacaataggcaactacat 3313375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 316
Target Start/End: Original strand, 3392859 - 3393148
Alignment:
Q  27 gttattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatat 126  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||| |||||||| || || |||||||||||||||||| |||| |  |||||||||||||    
T  3392859 gttattccaatatcagcatgaagtccacaaccatttagtatctttgtaacataagctctatccttgccgataaagaaacaacagacatcaagaaatatat 3392958  T
Q  127 ccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtcca 226  Q
    |||||||||||  |||  ||||||| | | |||| ||| |||||||||| |||| ||| ||||| || ||| | || || ||||| ||||||||   |||    
T  3392959 ccttttccatacgatcgcttaaaccattaaagctaatttttagtttctcatgtatttgatcattgggtattttttcaagctttgataatacactctgcca 3393058  T
Q  227 ttctctttttgtcct-tccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagag 316  Q
     |||  |||| |||| | || |||||||||||||||||| ||||||||| ||||| | ||| ||||| || ||||| |||| ||| |||||    
T  3393059 ctcttgttttctcctcttca-ataagtaagatccaaggacttcaagagctagtggtattccaccacaataggcaactacatatcttgagag 3393148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 301
Target Start/End: Complemental strand, 13786440 - 13786168
Alignment:
Q  29 tattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatcc 128  Q
    ||||||||| |||||| |||||||||| |||||||||||||  |||||||||||  ||||||  || ||||||||| |||||||||||||||||| | ||    
T  13786440 tattccaatatcagcacaaagtccacagccatttagtatctctgtaacataggctttgtcctcaccaataaagaaacaacatatgtcaagaaatacagcc 13786341  T
Q  129 ttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccatt 228  Q
    ||| ||||||||||| ||||||| ||||| |||||| | ||| |||  || | | | | ||  |||||| |||| | |||||||| ||||||| ||||||    
T  13786340 tttaccatatcatccattaaaccatcataacttattttcagtatctgctgcattagataatggggaattttctcaaattttgacagtacacttctccatt 13786241  T
Q  229 ctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaac 301  Q
    ||  |||||||||   || |||   ||| |||| |||||||||||| ||||| ||||||||||| ||||||||    
T  13786240 cttgttttgtcctgtaatgtaacatagacccaatgatttcaagagccagtggtaatcctccacaataagcaac 13786168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 3287728 - 3287927
Alignment:
Q  27 gttattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatat 126  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||  || |||||||  |||||||| || ||||||||| |||| ||||||||||||||||    
T  3287728 gttattccagtgtcagcatcaagtccacagccatttagtatctctgtgacataggttctgtccttaccaataaagaaacaacaaatgtcaagaaatatat 3287827  T
Q  127 ccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtcca 226  Q
    ||||||||||||| |  ||||| || |||||||||||||| ||||| ||||| | ||| | ||| |||||| ||| | | ||||| ||||||||| ||||    
T  3287828 ccttttccatatcttgatttaacccatcatagcttattctcagtttttcttggatttgatgattgggaattgtctttggatttgagaatacacttatcca 3287927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 316
Target Start/End: Complemental strand, 3363024 - 3362735
Alignment:
Q  27 gttattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatat 126  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||| |||||||| || || ||||| |||||||||||| | || |  |||||||||||||    
T  3363024 gttattccaatatcagcattaagtccacaaccatttagtatctttgtaacataagctctatccttaccgataaagaaacagcagacatcaagaaatatat 3362925  T
Q  127 ccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtcca 226  Q
     ||||||||||  |||||||||||| ||| |||||||| ||||| |||| |||| ||| ||||| || ||  | ||||| ||||| ||||||||   |||    
T  3362924 tcttttccatacgatcctttaaaccatcaaagcttatttttagtatctcgtgtatttgatcattgggtatcttttctagctttgataatacactccgcca 3362825  T
Q  227 ttctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagag 316  Q
     |||  |||| ||||     | |||||||||||||||| ||||||||| ||||| | ||| ||||| || ||||| |||| ||| |||||    
T  3362824 ctcttgttttttcctcttgaacaagtaagatccaaggacttcaagagctagtggtattccaccacaataggcaactacatctcttgagag 3362735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 319
Target Start/End: Complemental strand, 31174653 - 31174363
Alignment:
Q  29 tattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatcc 128  Q
    ||||||||| ||||||| ||| ||||| ||||| |||||||  |||||||  || |||| ||| || || |||||| |||||||||||||||||||||||    
T  31174653 tattccaatatcagcatgaagcccacagccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaatatatcc 31174554  T
Q  129 ttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccatt 228  Q
    |||||  ||| ||| | ||| ||||| ||||| ||||| ||||||| ||| ||||| |  || |||||| |||||| |||||| | | ||||| ||||||    
T  31174553 ttttcagtataatcttctaagccgtcgtagctgattctcagtttctgttgcacttgattgttgggaattttctctaattttgatagtgcacttttccatt 31174454  T
Q  229 ctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagttc 319  Q
    ||  |||| ||||     ||||||||  |||||||| ||||||||| | ||| |||||||| || |||||||| || ||| ||| ||||||    
T  31174453 ctagttttttcctcattgataagtaacttccaaggacttcaagagccaatggtaatcctccgcaataagcaaccacttttttagtgagttc 31174363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 319
Target Start/End: Original strand, 3399895 - 3400185
Alignment:
Q  29 tattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatcc 128  Q
    ||||||||| ||||||| |||||||||  |||| |||||||  |||||||  || |||| ||| || || |||||| ||||||||||||||||||| |||    
T  3399895 tattccaatatcagcatgaagtccacatgcattaagtatctctgtaacatcagctctgttctttccaatcaagaaacaacatatgtcaagaaatatgtcc 3399994  T
Q  129 ttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccatt 228  Q
    ||||   ||| ||| | |||||| |||||||| ||||| | | ||| ||| ||||  |  || |||||| |||||| |||||| | | ||||| ||||||    
T  3399995 ttttgtgtataatcttgtaaaccatcatagctgattctcaatatctgttgcacttcattgttgggaattttctctaattttgatagtgcacttctccatt 3400094  T
Q  229 ctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagttc 319  Q
    |||   |||||||     ||||||||  |||||||| ||||||||| ||||| |||||||| || ||| |||| |||||| ||| ||||||    
T  3400095 ctcgggttgtcctctttgataagtaacttccaaggacttcaagagccagtggtaatcctccgcaataaccaactacatttttagtgagttc 3400185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 27 - 292
Target Start/End: Complemental strand, 13807701 - 13807436
Alignment:
Q  27 gttattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatat 126  Q
    |||||||| || ||||||| ||||||||| |||| ||| ||||  | ||||||||| || | ||| |||||||||||| |||| |||||||||||||||     
T  13807701 gttattcccatatcagcattaagtccacaaccatctagaatctctgaaacataggctctcttctttccgataaagaaacaacaaatgtcaagaaatatac 13807602  T
Q  127 ccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattct-ctctagttttgacaatacacttgtcc 225  Q
    || ||||   ||||   | |||||| |||||||||||| | ||||| | ||| ||||  |||||||||||||| ||| || ||||| | |  |||| |||    
T  13807601 ccctttcggaatcacaatctaaaccatcatagcttattttcagttttttttgcactttatcattaggaattctcctcaag-tttgatagtgtacttttcc 13807503  T
Q  226 attctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccaca 292  Q
    | | |  |||||||||  || |||||||||||||||    ||||||||| ||||| |||||||||||    
T  13807502 actgttgttttgtcctatcaaataagtaagatccaatttcttcaagagctagtggtaatcctccaca 13807436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 29 - 318
Target Start/End: Original strand, 14768192 - 14768482
Alignment:
Q  29 tattccaatgtcagcataaagtccacacccatttagtatcttggtaacat-aggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatc 127  Q
    ||||||||| ||||||||||||||||| ||||||| |||||  ||||| | |||| || |||||||| ||||||||||||||||||||||||||||||||    
T  14768192 tattccaatatcagcataaagtccacatccatttaatatctctgtaacgttaggctctatccttgccaataaagaaaaaacatatgtcaagaaatatatc 14768291  T
Q  128 cttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccat 227  Q
    |||||  | |||||||| |||||| |  |||||||| || |||||||  || ||||| ||||| |||||||||| || |||||||| |||||||  ||||    
T  14768292 cttttttaaatcatcctctaaaccattgtagcttatactcagtttctgatgcacttgatcattgggaattctctttaattttgacagtacactttcccat 14768391  T
Q  228 tctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagtt 318  Q
    |||  ||||||||| ||||||||||||||||||| || ||||||||| | ||||||||||||||| |||||||| || ||| | |||||||    
T  14768392 tctggttttgtcctcccatataagtaagatccaatgacttcaagagccaatggcaatcctccacaataagcaactaccttttttgagagtt 14768482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 29 - 319
Target Start/End: Original strand, 7531 - 7821
Alignment:
Q  29 tattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatcc 128  Q
    ||||||||| |||||| |||||||||| ||||||||||||| |||||||||| |  |||||||||||||||||||| ||||||  |||||||||||| ||    
T  7531 tattccaatatcagcaaaaagtccacaaccatttagtatctcggtaacatagtctttgtccttgccgataaagaaacaacatacatcaagaaatatagcc 7630  T
Q  129 ttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccatt 228  Q
    |||| | | || ||  | ||||| |||||||||||||| ||||||||||| ||||  ||||  |||||| | |||| |||||| |  |||||| ||||||    
T  7631 tttttcgtgtcttctgtcaaaccatcatagcttattctcagtttctcttgcacttcttcatggggaattttttctaattttgatagcacacttttccatt 7730  T
Q  229 ctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagttc 319  Q
    ||   ||||||||| || |||||| |||||| || ||||||||||| || ||||| ||||||||||||  ||| |||||| | ||||||||    
T  7731 cttcctttgtcctttcaaataagtgagatccgagaatttcaagagctaggggcaaccctccacagtaattaactacattttttgagagttc 7821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 41 - 259
Target Start/End: Complemental strand, 30416723 - 30416505
Alignment:
Q  41 agcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatccttttccatatca 140  Q
    |||| |||||||||| |||||||| ||||  |||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||    
T  30416723 agcaaaaagtccacagccatttagaatctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttacca 30416624  T
Q  141 tcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccattctctttttgtcc 240  Q
    ||  ||| ||| || ||||||||||||||||||||||| || || |  | ||||||| ||||||||||||| |  |||||||||||||||  | ||||||    
T  30416623 tcacttagaccatcgtagcttattcttagtttctcttgcacatgatggtcaggaattatctctagttttgatagcacacttgtccattcttctcttgtcc 30416524  T
Q  241 ttccatataagtaagatcc 259  Q
    | |||||||| ||||||||    
T  30416523 tgccatataaataagatcc 30416505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 15801786 - 15801625
Alignment:
Q  29 tattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatcc 128  Q
    ||||||||| ||||||| |||||||||||||||||||||||  |||||||| || || ||||| |||||||||||| |||| |  ||||||||||||| |    
T  15801786 tattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattc 15801687  T
Q  129 ttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcatt 190  Q
    |||||||||| ||||| |||||| ||| |||||||| |||||||||| |||| ||| |||||    
T  15801686 ttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcatt 15801625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 41 - 325
Target Start/End: Complemental strand, 20810897 - 20810613
Alignment:
Q  41 agcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatccttttccatatca 140  Q
    ||||| ||||||||||||||| |||||||  |||||||  || |||| ||| || || |||||| ||||||||||||||||||| ||||||| | ||| |    
T  20810897 agcatgaagtccacacccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaatatgtccttttgcgtataa 20810798  T
Q  141 tcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccattctctttttgtcc 240  Q
    || | |||||| |||||||| ||||| | | ||| ||| || |  |  || |||||| |||||| |||||| | | ||| | ||||||||  ||  ||||    
T  20810797 tcttctaaaccatcatagctgattctcaatatctgttgcacatcattgttgggaattttctctaattttgatagtgcacatctccattcttgttccgtcc 20810698  T
Q  241 ttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagttcggtaaa 325  Q
    |  || ||||||||  |||||||| ||||||||| || || ||||||   || |||||||| |||||||||||||||||| ||||    
T  20810697 tctcagataagtaacgtccaaggacttcaagagccaggggtaatcctttgcaataagcaactacatttctagagagttcgctaaa 20810613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 12596536 - 12596389
Alignment:
Q  27 gttattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatat 126  Q
    ||||||||||| || || | |||  ||||||||||||||||||  |||||||| || || ||||| |||||||||||| |||| || |||||||||||||    
T  12596536 gttattccaatatccgcttgaagatcacacccatttagtatctctgtaacataagcactatccttaccgataaagaaacaacaaatatcaagaaatatat 12596437  T
Q  127 ccttttccatatcatcctttaaaccgtcatagcttattcttagtttct 174  Q
    |||||||||||  |||| ||||||| ||  | |||||| |||||||||    
T  12596436 ccttttccatacgatcccttaaaccttcgaaacttatttttagtttct 12596389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 325
Target Start/End: Complemental strand, 20837264 - 20836968
Alignment:
Q  29 tattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatcc 128  Q
    ||||||||| ||||||| ||||||||||||||| |||||||  |||||||  || |||| ||| || || |||||| ||||||||||||||||||| |||    
T  20837264 tattccaatatcagcatgaagtccacacccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaatatgtcc 20837165  T
Q  129 ttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccatt 228  Q
    | || | ||| ||| | |||||| |||||||| ||||| | | ||| ||| || |  |  || |||||| |||||| | ||   | | ||  | ||||||    
T  20837164 tgtttcgtataatcttctaaaccatcatagctgattctcaatatctgttgcacatcattgttgggaattttctctaatatttgtagtgcatctctccatt 20837065  T
Q  229 ctctttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagttcggtaaa 325  Q
    || |||  |||||  || |||||||| ||||||||| ||||||||| || || ||||||   || |||||||| |||||||||||||||||| ||||    
T  20837064 ctttttccgtcctctcagataagtaacatccaaggacttcaagagccaggggtaatcctttgcaataagcaactacatttctagagagttcgctaaa 20836968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 318
Target Start/End: Original strand, 8373008 - 8373294
Alignment:
Q  32 tccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatccttt 131  Q
    |||||| ||||||| ||||||||| ||||| || ||||  || ||||   | |||| ||| || || |||||| ||||||||||||||||||||||||||    
T  8373008 tccaatatcagcatgaagtccacaaccattaaggatctctgtgacatcaactctgttctttccaatgaagaaacaacatatgtcaagaaatatatccttt 8373107  T
Q  132 tccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccattctc 231  Q
    ||  ||| ||| | |||||| |||||||| ||||| | | ||| | | |||| ||  || |||||| ||  || |||||| ||| ||||| ||||||||     
T  8373108 tctgtataatcttctaaaccatcatagctgattctcaatatctgtagcacttcgttgttgggaattttcgttaattttgataatgcacttctccattctt 8373207  T
Q  232 tttttgtccttccatataagtaagatccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagtt 318  Q
     || ||||||   | |||||||||||||||||| ||||||||| ||||| ||||||   || |||| ||| ||||||||||||||||    
T  8373208 gttctgtcctcttagataagtaagatccaaggacttcaagagctagtggtaatcctttgcaataagaaaccacatttctagagagtt 8373294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 36215342 - 36215445
Alignment:
Q  96 ataaagaaaaaacatatgtcaagaaatatatccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaa 195  Q
    ||||||||| ||  ||||||||| ||||| || || ||| | ||||| |||| ||| |||||||| ||| |||  |||| ||||||||||||||| ||||    
T  36215342 ataaagaaacaagctatgtcaaggaatatttctttctccgtgtcatcatttagaccttcatagctcatttttaacttcttttgtacttggtcattgggaa 36215441  T
Q  196 ttct 199  Q
    ||||    
T  36215442 ttct 36215445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 5356066 - 5356169
Alignment:
Q  96 ataaagaaaaaacatatgtcaagaaatatatccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaa 195  Q
    ||||||||| ||  ||||||||||||||| || || ||   |||||| |||||||| |||||||||||| ||||||||| |||||||||||  |||||||    
T  5356066 ataaagaaacaagctatgtcaagaaatatttctttctcggcatcatcatttaaaccatcatagcttatttttagtttcttttgtacttggttgttaggaa 5356165  T
Q  196 ttct 199  Q
    ||||    
T  5356166 ttct 5356169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 5424373 - 5424171
Alignment:
Q  28 ttattccaatgtcagcataaagtccacacccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatc 127  Q
    |||||||||| |||||| |||||||||| ||||||| |||    |||||||     |||||| | || ||||||||| ||  ||||||||| ||||| ||    
T  5424373 ttattccaatttcagcaaaaagtccacatccatttaatataagtgtaacatcatttctgtccattccaataaagaaacaagctatgtcaaggaatatttc 5424274  T
Q  128 cttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccat 227  Q
     || ||  ||||||| |||||| | ||||||||||||||||  ||||| |||||||| | |||||||||||| |  ||||||  |||| ||||| |||||    
T  5424273 tttctcagtatcatcatttaaagcatcatagcttattcttaacttctcctgtacttgattattaggaattcttttgagtttttccaatgcacttttccat 5424174  T
Q  228 tct 230  Q
    |||    
T  5424173 tct 5424171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 230
Target Start/End: Original strand, 5068524 - 5068658
Alignment:
Q  96 ataaagaaaaaacatatgtcaagaaatatatccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaa 195  Q
    ||||||||| ||  ||||||||| ||||| || || ||  ||||||| |||||| | ||||||||||||||||  ||||| |||||||| | ||||||||    
T  5068524 ataaagaaacaagctatgtcaaggaatatttctttctcagtatcatcatttaaagcatcatagcttattcttaacttctcctgtacttgattattaggaa 5068623  T
Q  196 ttctctctagttttgacaatacacttgtccattct 230  Q
    |||| |  |||||   |||||||||| ||||||||    
T  5068624 ttcttttgagtttgtccaatacacttttccattct 5068658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 5175377 - 5175306
Alignment:
Q  137 atcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttt 208  Q
    |||||| | |||||| |||||||||||| |||  |||| |||||||| ||||||||||||||| ||||||||    
T  5175377 atcatcgtctaaaccatcatagcttatttttaacttcttttgtactttgtcattaggaattctttctagttt 5175306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 5277204 - 5277133
Alignment:
Q  137 atcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattctctctagttt 208  Q
    |||||| | |||||| |||||||||||| |||  |||| |||||||| ||||||||||||||| ||||||||    
T  5277204 atcatcgtctaaaccatcatagcttatttttaacttcttttgtactttgtcattaggaattctttctagttt 5277133  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 5104364 - 5104425
Alignment:
Q  138 tcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattct 199  Q
    ||||| |||||||| || |||||||||||||  |||| ||||||||| | ||||||||||||    
T  5104364 tcatcatttaaaccatcgtagcttattcttaacttcttttgtacttgattattaggaattct 5104425  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 5133369 - 5133458
Alignment:
Q  110 tatgtcaagaaatatatccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcattaggaattct 199  Q
    ||||| ||| ||||| || || || ||||| || |||||| | |||||||||||| |||| |||| ||||||||| | ||||||||||||    
T  5133369 tatgttaaggaatatttctttctcaatatcttcatttaaagcatcatagcttatttttagcttcttttgtacttgattattaggaattct 5133458  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 6665764 - 6665703
Alignment:
Q  258 ccaaggatttcaagagcaagtggcaatcctccacagtaagcaacaacatttctagagagttc 319  Q
    ||||||| |||||||||||| |||||||| ||||| |||||||| || | |||||| |||||    
T  6665764 ccaaggagttcaagagcaagaggcaatcccccacaataagcaactacctgtctagaaagttc 6665703  T

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