View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15541_high_28 (Length: 314)
Name: NF15541_high_28
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15541_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 25 - 300
Target Start/End: Complemental strand, 11380573 - 11380298
Alignment:
| Q |
25 |
atttctgcatttttcattccatatgtattcataaaacccatttcattagatataaacaaactctatggcacacttcgatacgaaagtgaactcaattgag |
124 |
Q |
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| T |
11380573 |
atttttgcatttttcattccatatgtattcataaaacccatttcattagatataaacaaactttatggcacacttcgatacgaaagtgaactcaattgag |
11380474 |
T |
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| Q |
125 |
atgatcataccaattctaaatgtgtatttattcttatattgaactctgtatggcagctcttctaattataatctcttatgatgaatcatgattcattcta |
224 |
Q |
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| T |
11380473 |
atgatcataccaattctaaatgtgtatttattcttatattgaactctgtatggcagctcttctaattataatctcttatgatgaatcatgattcattcta |
11380374 |
T |
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| Q |
225 |
ccagccattctttctggcaagacttccgagttatggttcaactaatttattttgttcaaactaggatgaatctgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11380373 |
ccagccattctttctggcaagacttccgagttatggttcaactaatttattttgttcaaactaggatgaatctgtg |
11380298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 237
Target Start/End: Original strand, 2577819 - 2577961
Alignment:
| Q |
97 |
cttcgatacgaaagtgaactcaattgagatgatcataccaattctaaatgtgtatttattcttatattgaactctgtatggcagctc--ttctaattata |
194 |
Q |
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| T |
2577819 |
cttcgatatgaaagtgaacgcaatcgagataatcataccaatcctcaatgtgtatttattcttatattgaactctgtatggcagctcttttctaattata |
2577918 |
T |
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| Q |
195 |
atctcttatgatgaatcatgattcattctaccagccattcttt |
237 |
Q |
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| T |
2577919 |
atctcttatgatgaatcatgattcattctaccagccattcttt |
2577961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 2577647 - 2577721
Alignment:
| Q |
11 |
catcttatccctttatttctgcatttttcattccatatgtattcataaaacccatttcattagatataaacaaac |
85 |
Q |
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| T |
2577647 |
catcttatccctttatttctgcatttttcattccatatgtattcatataacccatttcattagataaaaacaaac |
2577721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 2579616 - 2579675
Alignment:
| Q |
241 |
gcaagacttccgagttatggttcaactaatttattttgttcaaactaggatgaatctgtg |
300 |
Q |
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| T |
2579616 |
gcaagacttccaagttatggttctactaatttattttgttcaaactaggataaatctgtg |
2579675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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