View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15541_high_3 (Length: 906)

Name: NF15541_high_3
Description: NF15541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15541_high_3
NF15541_high_3
[»] chr4 (4 HSPs)
chr4 (470-696)||(29057878-29058114)
chr4 (269-339)||(32078656-32078726)
chr4 (703-758)||(36925908-36925963)
chr4 (394-431)||(22255673-22255710)
[»] chr3 (3 HSPs)
chr3 (703-826)||(33455400-33455523)
chr3 (389-462)||(33455700-33455773)
chr3 (530-582)||(11354172-11354222)
[»] chr7 (2 HSPs)
chr7 (703-826)||(29060359-29060482)
chr7 (356-462)||(29060658-29060765)
[»] chr1 (3 HSPs)
chr1 (703-826)||(48834717-48834840)
chr1 (389-462)||(48835016-48835089)
chr1 (409-446)||(49420160-49420197)
[»] chr5 (1 HSPs)
chr5 (470-642)||(35431508-35431678)
[»] chr6 (1 HSPs)
chr6 (607-642)||(34607568-34607603)
[»] chr8 (2 HSPs)
chr8 (396-446)||(35840465-35840515)
chr8 (394-431)||(5433644-5433681)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 2e-88; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 470 - 696
Target Start/End: Original strand, 29057878 - 29058114
Alignment:
Q  470 ataaacatctcccctttcaatttaacacggttagctattatgttaaaagtacatcttctat----------ctattgatgatgataatcttcatccacca 559  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||          |||||||||||||||||||||||||||||    
T  29057878 ataaacatctcccctttcaatttaacacggttagttattctgttaaaagtacatcttctatttttctgattctattgatgatgataatcttcatccacca 29057977  T
Q  560 atcctatatatttctgccattttattttaagctttcctttatttcaattatttcatatctcaattatcatagttcactgctttaccggaggagtactaaa 659  Q
    | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||    
T  29057978 aacctatatatttctgccattttattttaagcttttctttatttcaattatttcatatctcaattatcatagttcactgctttatcggaggaatattaaa 29058077  T
Q  660 aaaccataggccgttaactcttgcctgaacaatattt 696  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  29058078 aaaccataggccgttatctctttcctgaacaatattt 29058114  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 32078726 - 32078656
Alignment:
Q  269 ttaaatattagacacagttgcaaaatatcagtcttaaatttcaaattggttcatttgtagatacattttac 339  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  32078726 ttaaatattagacacagttgcaaaatattagtcttaaatttccaattggttcatttgtagatacattttac 32078656  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 703 - 758
Target Start/End: Complemental strand, 36925963 - 36925908
Alignment:
Q  703 tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatga 758  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||||| ||| ||||    
T  36925963 ttttgatttctatgattattcaataattaaattcattatattcaaccgatcaatga 36925908  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 431
Target Start/End: Original strand, 22255673 - 22255710
Alignment:
Q  394 ttagattaaggagtagcacatattttatgatggtctgt 431  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  22255673 ttagattaaagaggagcacatattttatgatggtctgt 22255710  T

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Target: chr3 (Bit Score: 124; Significance: 3e-63; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 703 - 826
Target Start/End: Original strand, 33455400 - 33455523
Alignment:
Q  703 tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt 802  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33455400 tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt 33455499  T
Q  803 gatatatttcagattgggaagaaa 826  Q
    ||||||||||||||||||||||||    
T  33455500 gatatatttcagattgggaagaaa 33455523  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 389 - 462
Target Start/End: Complemental strand, 33455773 - 33455700
Alignment:
Q  389 aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacacatcatcttc 462  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33455773 aacggttagattaaggagtaacacatattttatgatggtctgttcacaccatatatattccacacatcatcttc 33455700  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 530 - 582
Target Start/End: Complemental strand, 11354222 - 11354172
Alignment:
Q  530 tctattgatgatgataatcttcatccaccaatcctatatatttctgccatttt 582  Q
    |||||||||||||||||||||||||||| || ||  |||||||||||||||||    
T  11354222 tctattgatgatgataatcttcatccactaaacc--tatatttctgccatttt 11354172  T

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Target: chr7 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 703 - 826
Target Start/End: Original strand, 29060359 - 29060482
Alignment:
Q  703 tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt 802  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  29060359 tttttatttctacgattatgcaataattaaattcattgtattcaaccaatcaatgagtaaatttcttataaatttcagctcatcatatcatcacgaattt 29060458  T
Q  803 gatatatttcagattgggaagaaa 826  Q
    ||||||||||||||||||||||||    
T  29060459 gatatatttcagattgggaagaaa 29060482  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 356 - 462
Target Start/End: Complemental strand, 29060765 - 29060658
Alignment:
Q  356 gggaattgtttcccaccatgggaaaannnnnnn-aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacaca 454  Q
    |||||||||||||||||||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29060765 gggaattgtttcccaccatgggaaagttttttttaacggttagattaaggagtagcgcatattttatgatggtctgttcacaccatatattttccacaca 29060666  T
Q  455 tcatcttc 462  Q
    ||||||||    
T  29060665 tcatcttc 29060658  T

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Target: chr1 (Bit Score: 112; Significance: 4e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 703 - 826
Target Start/End: Original strand, 48834717 - 48834840
Alignment:
Q  703 tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt 802  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  48834717 tttttatttctacgattatgcaataattaaattcattgtattcaaccaatcaatgagtaaatttcttataaatttcagctcatcatatcatcacgaattt 48834816  T
Q  803 gatatatttcagattgggaagaaa 826  Q
    ||||||||||||||||||||||||    
T  48834817 gatatatttcagattgggaagaaa 48834840  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 389 - 462
Target Start/End: Complemental strand, 48835089 - 48835016
Alignment:
Q  389 aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacacatcatcttc 462  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48835089 aacggttagattaaggagtagctcatattttatgatggtctgttcacaccatatattttccacacatcatcttc 48835016  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 446
Target Start/End: Original strand, 49420160 - 49420197
Alignment:
Q  409 gcacatattttatgatggtctgttcacaccatatattt 446  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  49420160 gcacacattttatgatggtctgtccacaccatatattt 49420197  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 470 - 642
Target Start/End: Original strand, 35431508 - 35431678
Alignment:
Q  470 ataaacatctcccctttcaatttaacacggttagctattatgttaaaagtacatcttcta----tctattgatgatgataatcttcatccaccaatccta 565  Q
    |||||||  ||||||||||||||||||| |||| ||||| |||||| |||| |||  |||    ||| ||  | || ||||||||| ||||| || ||||    
T  35431508 ataaacacgtcccctttcaatttaacaccgttaactattctgttaagagtaaatcccctacttttctgtt--tcataataatcttcgtccactaaaccta 35431605  T
Q  566 tatatttctgccattttattttaagctttcctttatttcaattatttcatatctcaattatcatagttcactgcttt 642  Q
    |||  ||||||||||||  | |||||||| || ||||| |||||||||| |||||||||||||||||||||||||||    
T  35431606 tat--ttctgccatttt--tataagcttttctatatttaaattatttcaaatctcaattatcatagttcactgcttt 35431678  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 642
Target Start/End: Complemental strand, 34607603 - 34607568
Alignment:
Q  607 ttatttcatatctcaattatcatagttcactgcttt 642  Q
    |||||||||||||| |||||||||||||||||||||    
T  34607603 ttatttcatatctcgattatcatagttcactgcttt 34607568  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 35840515 - 35840465
Alignment:
Q  396 agattaaggagtagcacatattttatgatggtctgttcacaccatatattt 446  Q
    ||||||| |||  ||||| ||||||||||||||||| ||||||||||||||    
T  35840515 agattaaagaggtgcacacattttatgatggtctgtccacaccatatattt 35840465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 431
Target Start/End: Complemental strand, 5433681 - 5433644
Alignment:
Q  394 ttagattaaggagtagcacatattttatgatggtctgt 431  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  5433681 ttagattaaagaggagcacatattttatgatggtctgt 5433644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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